Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B02498 Eucalyptus grandis HOM05D005728 ORTHO05D005733 2.2e-73 278.9 144 100.0
QL01p022229 Quercus lobata HOM05D005728 ORTHO05D005733 8.1e-39 164.1 136 61.0
PGR102G3095 Punica granatum HOM05D005728 ORTHO05D005733 4.0e-38 161.8 139 62.6
CiPaw.13G113100 Carya illinoinensis HOM05D005728 ORTHO05D005733 2.6e-37 159.1 136 59.6
Thecc.09G340800 Theobroma cacao HOM05D005728 ORTHO05D005733 1.3e-36 156.8 137 59.1
Duzib150G0774 Durio zibethinus HOM05D005728 ORTHO05D005733 2.9e-36 155.6 136 58.8
Duzib168G0076 Durio zibethinus HOM05D005728 ORTHO05D005733 3.2e-35 152.1 136 59.6
FAN16G2914 Fragaria x ananassa HOM05D005728 ORTHO05D005733 9.2e-35 150.6 136 54.4
Gohir.D05G102800 Gossypium hirsutum HOM05D005728 ORTHO05D005733 1.6e-34 149.8 136 56.6
FvH4_3g32270 Fragaria vesca HOM05D005728 ORTHO05D005733 2.7e-34 149.1 136 53.7
FAN11G0683 Fragaria x ananassa HOM05D005728 ORTHO05D005733 2.7e-34 149.1 136 53.7
FAN25G2087 Fragaria x ananassa HOM05D005728 ORTHO05D005733 2.7e-34 149.1 136 53.7
RcHm_v2.0_Chr5g0059071 Rosa chinensis HOM05D005728 ORTHO05D005733 3.5e-34 148.7 136 53.7
FAN21G3175 Fragaria x ananassa HOM05D005728 ORTHO05D005733 7.8e-34 147.5 135 54.1
Gorai.009G107100 Gossypium raimondii HOM05D005728 ORTHO05D005733 1.7e-33 146.4 134 56.7
MD03G1117800 Malus domestica HOM05D005728 ORTHO05D005733 3.9e-33 145.2 131 54.2
CANSAT54G0421 Cannabis sativa HOM05D005728 ORTHO05D005733 1.1e-32 143.7 150 58.0
Gohir.A05G103100 Gossypium hirsutum HOM05D005728 ORTHO05D005733 1.9e-32 142.9 134 55.2
Haze_23825 Corylus avellana HOM05D005728 ORTHO05D005733 2.5e-32 142.5 136 56.6
Potri.004G211000 Populus trichocarpa HOM05D005728 ORTHO05D005733 2.1e-31 139.4 133 56.4
Sed0004216 Sechium edule HOM05D005728 ORTHO05D005733 8.1e-31 137.5 133 52.6
CSS0032457 Camellia sinensis var. sinensis HOM05D005728 ORTHO05D005733 1.4e-30 136.7 136 53.7
Glyma.12G172600 Glycine max HOM05D005728 ORTHO05D005733 1.4e-30 136.7 139 54.0
TWI31G0058 Tripterygium wilfordii HOM05D005728 ORTHO05D005733 1.4e-30 136.7 142 51.4
arahy.Tifrunner.gnm1.ann1.X5FS8C Arachis hypogaea HOM05D005728 ORTHO05D005733 2.4e-30 136.0 130 56.9
Cfa011317 Carpinus fangiana HOM05D005728 ORTHO05D005733 3.1e-30 135.6 136 55.1
Glyma.12G067500 Glycine max HOM05D005728 ORTHO05D005733 4.0e-30 135.2 130 55.4
Hma1.2p1_0058F.1_g032530 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 8.9e-30 134.0 136 55.1
MELO3C020692.2 Cucumis melo HOM05D005728 ORTHO05D005733 1.2e-29 133.7 136 54.4
Prupe.6G101500 Prunus persica HOM05D005728 ORTHO05D005733 1.2e-29 133.7 123 54.5
Potri.009G013800 Populus trichocarpa HOM05D005728 ORTHO05D005733 2.0e-29 132.9 138 53.6
Gohir.D08G215300 Gossypium hirsutum HOM05D005728 ORTHO05D005733 5.8e-29 131.3 138 55.1
Gorai.004G228900 Gossypium raimondii HOM05D005728 ORTHO05D005733 7.6e-29 131.0 138 54.3
Phvul.005G135400 Phaseolus vulgaris HOM05D005728 ORTHO05D005733 7.6e-29 131.0 139 50.4
Sabra04G0142500 Salix brachista HOM05D005728 ORTHO05D005733 7.6e-29 131.0 134 51.5
Gohir.A08G197900 Gossypium hirsutum HOM05D005728 ORTHO05D005733 1.3e-28 130.2 138 54.3
Glyma.11G146600 Glycine max HOM05D005728 ORTHO05D005733 1.7e-28 129.8 130 53.8
Sed0003209 Sechium edule HOM05D005728 ORTHO05D005733 1.7e-28 129.8 137 51.8
Rhsim01G0216600 Rhododendron simsii HOM05D005728 ORTHO05D005733 6.4e-28 127.9 133 52.6
TWI79G1513 Tripterygium wilfordii HOM05D005728 ORTHO05D005733 6.4e-28 127.9 134 50.7
Phvul.011G079200 Phaseolus vulgaris HOM05D005728 ORTHO05D005733 1.1e-27 127.1 132 52.3
Atru.chr3.3629 Acer truncatum HOM05D005728 ORTHO05D005733 4.1e-27 125.2 142 50.0
THA.LOC104800607 Tarenaya hassleriana HOM05D005728 ORTHO05D005733 4.1e-27 125.2 134 53.7
TAR629G0455 Trochodendron aralioides HOM05D005728 ORTHO05D005733 1.2e-26 123.6 139 51.8
Glyma.13G326000 Glycine max HOM05D005728 ORTHO05D005733 2.1e-26 122.9 132 51.5
MD11G1136100 Malus domestica HOM05D005728 ORTHO05D005733 2.1e-26 122.9 131 51.1
Ciclev10029550m.g Citrus clementina HOM05D005728 ORTHO05D005733 3.5e-26 122.1 137 50.4
Gohir.D03G134400 Gossypium hirsutum HOM05D005728 ORTHO05D005733 4.6e-26 121.7 137 51.1
VMungo0403G0001 Vigna mungo HOM05D005728 ORTHO05D005733 6.0e-26 121.3 130 50.8
CsaV3_1G033730 Cucumis sativus L. HOM05D005728 ORTHO05D005733 7.8e-26 120.9 136 50.7
TPR.G11537 Trifolium pratense HOM05D005728 ORTHO05D005733 1.7e-25 119.8 132 50.0
Manes.04G021300 Manihot esculenta HOM05D005728 ORTHO05D005733 3.0e-25 119.0 140 52.9
Gohir.A03G033900 Gossypium hirsutum HOM05D005728 ORTHO05D005733 8.7e-25 117.5 138 50.7
VMungo1080G1182 Vigna mungo HOM05D005728 ORTHO05D005733 8.7e-25 117.5 131 49.6
PSO339G2100 Papaver somniferum HOM05D005728 ORTHO05D005733 1.1e-24 117.1 153 45.1
TPR.G15560 Trifolium pratense HOM05D005728 ORTHO05D005733 1.1e-24 117.1 129 48.8
EL10Ac9g22516 Beta vulgaris HOM05D005728 ORTHO05D005733 1.9e-24 116.3 129 50.4
PSO063G1604 Papaver somniferum HOM05D005728 ORTHO05D005733 1.9e-24 116.3 153 44.4
Aqoxy1G01237 Aquilegia oxysepala HOM05D005728 ORTHO05D005733 2.5e-24 115.9 137 48.2
Psat5g279440 Pisum sativum HOM05D005728 ORTHO05D005733 3.3e-24 115.5 131 47.3
Ca_01413_v3 Cicer arietinum L. HOM05D005728 ORTHO05D005733 4.3e-24 115.2 132 50.8
Peaxi162Scf00270g00082 Petunia axillaris HOM05D005728 ORTHO05D005733 5.6e-24 114.8 136 51.5
Lalb_Chr19g0137271 Lupinus albus HOM05D005728 ORTHO05D005733 1.6e-23 113.2 129 50.4
Psat7g225080 Pisum sativum HOM05D005728 ORTHO05D005733 1.6e-23 113.2 129 48.8
ECA238G1730 Erigeron canadensis HOM05D005728 ORTHO05D005733 3.6e-23 112.1 130 50.8
Lj3g0009869 Lotus japonicus HOM05D005728 ORTHO05D005733 3.6e-23 112.1 126 50.8
Medtr2g094210 Medicago truncatula HOM05D005728 ORTHO05D005733 3.6e-23 112.1 141 46.8
Ah.01g002910 Amaranthus hybridus HOM05D005728 ORTHO05D005733 6.2e-23 111.3 126 48.4
ECA248G1213 Erigeron canadensis HOM05D005728 ORTHO05D005733 6.2e-23 111.3 135 44.4
MBI07_g19310_MAGBIO Magnolia biondii HOM05D005728 ORTHO05D005733 6.2e-23 111.3 141 45.4
Medtr4g059310 Medicago truncatula HOM05D005728 ORTHO05D005733 6.2e-23 111.3 129 50.4
Nn2g10793 Nelumbo nucifera HOM05D005728 ORTHO05D005733 1.4e-22 110.2 142 47.9
Ca_19255_v3 Cicer arietinum L. HOM05D005728 ORTHO05D005733 5.2e-22 108.2 132 47.7
Sc15g0002200 Simmondsia chinensis HOM05D005728 ORTHO05D005733 9.0e-22 107.5 118 50.8
Cc01_g11120 Coffea canephora HOM05D005728 ORTHO05D005733 1.2e-21 107.1 135 48.1
Lsat_1_v5_gn_1_65300 Lactuca sativa HOM05D005728 ORTHO05D005733 1.2e-21 107.1 130 44.6
Cpa.g.sc216.7 Carica papaya HOM05D005728 ORTHO05D005733 5.8e-21 104.8 138 45.7
Duzib170G0319 Durio zibethinus HOM05D005728 ORTHO05D005733 9.9e-21 104.0 114 48.2
Nitab4.5_0000650g0250 Nicotiana tabacum HOM05D005728 ORTHO05D005733 1.3e-20 103.6 139 46.0
Nitab4.5_0012712g0010 Nicotiana tabacum HOM05D005728 ORTHO05D005733 3.8e-20 102.1 139 43.9
HanXRQChr01g0016901 Helianthus annuus HOM05D005728 ORTHO05D005733 6.4e-20 101.3 135 44.4
Sabra09G0007800 Salix brachista HOM05D005728 ORTHO05D005733 8.4e-20 100.9 111 51.4
Manes.11G145200 Manihot esculenta HOM05D005728 ORTHO05D005733 2.4e-19 99.4 120 55.0
Hma1.2p1_0055F.1_g031560 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 7.1e-19 97.8 118 50.8
Lalb_Chr14g0374671 Lupinus albus HOM05D005728 ORTHO05D005733 7.1e-19 97.8 136 45.6
Oeu059090.1 Olea europaea HOM05D005728 ORTHO05D005733 1.2e-18 97.1 127 43.3
Ah.01g014340 Amaranthus hybridus HOM05D005728 ORTHO05D005733 2.1e-18 96.3 127 43.3
Hma1.2p1_2468F.1_g322665 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 2.1e-18 96.3 118 50.8
CiPaw.14G080700 Carya illinoinensis HOM05D005728 ORTHO05D005733 2.7e-18 95.9 112 50.9
A07p18980 Brassica napus HOM05D005728 ORTHO05D005733 1.3e-17 93.6 97 52.6
BraA07t29603Z Brassica rapa HOM05D005728 ORTHO05D005733 1.3e-17 93.6 97 52.6
DCAR_018811 Daucus carota HOM05D005728 ORTHO05D005733 1.7e-17 93.2 139 40.3
Thhalv10017443m.g Eutrema salsugineum HOM05D005728 ORTHO05D005733 2.3e-17 92.8 97 53.6
RhsimUnG0058600 Rhododendron simsii HOM05D005728 ORTHO05D005733 2.3e-17 92.8 106 49.1
C04p22970 Brassica napus HOM05D005728 ORTHO05D005733 3.0e-17 92.4 95 53.7
Rhsim01G0216400 Rhododendron simsii HOM05D005728 ORTHO05D005733 3.0e-17 92.4 135 40.7
Carub.0004s0935 Capsella rubella HOM05D005728 ORTHO05D005733 5.1e-17 91.7 118 49.2
AUR62039639 Chenopodium quinoa HOM05D005728 ORTHO05D005733 5.1e-17 91.7 128 42.2
AUR62024979 Chenopodium quinoa HOM05D005728 ORTHO05D005733 6.6e-17 91.3 131 42.0
PGSC0003DMG400008077 Solanum tuberosum HOM05D005728 ORTHO05D005733 1.5e-16 90.1 138 39.9
BolC4t23791H Brassica oleracea HOM05D005728 ORTHO05D005733 1.9e-16 89.7 95 52.6
CARHR121360 Cardamine hirsuta HOM05D005728 ORTHO05D005733 1.9e-16 89.7 117 47.9
AL4G21610 Arabidopsis lyrata HOM05D005728 ORTHO05D005733 3.3e-16 89.0 116 48.3
Solyc11g069420.2 Solanum lycopersicum HOM05D005728 ORTHO05D005733 4.3e-16 88.6 138 39.9
Sopen11g028140 Solanum pennellii HOM05D005728 ORTHO05D005733 4.3e-16 88.6 138 39.9
AT2G28410 Arabidopsis thaliana HOM05D005728 ORTHO05D005733 9.6e-16 87.4 95 54.7
Sp4g11230 Schrenkiella parvula HOM05D005728 ORTHO05D005733 2.1e-15 86.3 99 49.5
Aa31LG5G7800 Aethionema arabicum HOM05D005728 ORTHO05D005733 4.8e-15 85.1 112 48.2
BcaB06g28212 Brassica carinata HOM05D005728 ORTHO05D005733 4.8e-15 85.1 98 52.0
A04p21550 Brassica napus HOM05D005728 ORTHO05D005733 2.4e-14 82.8 98 50.0
BraA04t17719Z Brassica rapa HOM05D005728 ORTHO05D005733 2.4e-14 82.8 98 50.0
Gorai.003G141500 Gossypium raimondii HOM05D005728 ORTHO05D005733 2.4e-14 82.8 104 50.0
ATR0048G010 Amborella trichopoda HOM05D005728 ORTHO05D005733 3.1e-14 82.4 130 40.8
Lj3g0014252 Lotus japonicus HOM05D005728 ORTHO05D005733 3.1e-14 82.4 112 40.2
MBI10_g13404_MAGBIO Magnolia biondii HOM05D005728 ORTHO05D005733 3.1e-14 82.4 143 39.9
BcaC02g08173 Brassica carinata HOM05D005728 ORTHO05D005733 1.2e-13 80.5 116 44.8
C04p57650 Brassica napus HOM05D005728 ORTHO05D005733 1.2e-13 80.5 116 44.8
BolC4t27283H Brassica oleracea HOM05D005728 ORTHO05D005733 1.5e-13 80.1 116 44.0
Migut.N02604 Erythranthe guttata HOM05D005728 ORTHO05D005733 1.5e-13 80.1 131 38.2
MSTRG.17803 Avicennia marina HOM05D005728 ORTHO05D005733 4.5e-13 78.6 122 41.8
arahy.Tifrunner.gnm1.ann1.C3ZM5V Arachis hypogaea HOM05D005728 ORTHO05D005733 2.2e-12 76.3 80 55.0
Nitab4.5_0000106g0140 Nicotiana tabacum HOM05D005728 ORTHO05D005733 4.9e-12 75.1 139 38.8
Oeu002871.1 Olea europaea HOM05D005728 ORTHO05D005733 1.1e-11 73.9 110 40.9
SGA_v2.0_scaffold2G00890 Striga asiatica HOM05D005728 ORTHO05D005733 3.2e-11 72.4 132 37.1
AL8G37240 Arabidopsis lyrata HOM05D010860 ORTHO05D005733 5.4e-11 71.6 117 36.8
SalBow3G4069 Salvia bowleyana HOM05D005728 ORTHO05D005733 7.1e-11 71.2 130 37.7
AT5G60650 Arabidopsis thaliana HOM05D010860 ORTHO05D005733 4.6e-10 68.6 137 35.0
arahy.Tifrunner.gnm1.ann1.5L1A31 Arachis hypogaea HOM05D005728 ORTHO05D005733 7.9e-10 67.8 132 37.1
BcaB08g36363 Brassica carinata HOM05D010860 ORTHO05D005733 1.3e-09 67.0 148 35.8
SalBow3G1069 Salvia bowleyana HOM05D005728 ORTHO05D005733 1.8e-09 66.6 134 38.1
A03p11060 Brassica napus HOM05D010860 ORTHO05D005733 3.9e-09 65.5 118 36.4
BraA03t10420Z Brassica rapa HOM05D010860 ORTHO05D005733 3.9e-09 65.5 118 36.4
Peaxi162Scf00101g00083 Petunia axillaris HOM05D005728 ORTHO05D005733 3.9e-09 65.5 105 39.0
BraA10t43864Z Brassica rapa HOM05D010860 ORTHO05D005733 6.7e-09 64.7 126 36.5
Thhalv10014945m.g Eutrema salsugineum HOM05D010860 ORTHO05D005733 8.7e-09 64.3 147 34.7
A10p17850 Brassica napus HOM05D010860 ORTHO05D005733 3.3e-08 62.4 143 34.3
Oeu030182.1 Olea europaea HOM05D005728 ORTHO05D005733 5.6e-08 61.6 114 39.5
BolC9t58211H Brassica oleracea HOM05D010860 ORTHO05D005733 1.3e-07 60.5 127 36.2
Carub.0008s2133 Capsella rubella HOM05D010860 ORTHO05D005733 2.8e-07 59.3 140 30.7
BcaC04g19726 Brassica carinata HOM05D010860 ORTHO05D005733 6.2e-07 58.2 127 35.4
BcaB01g04667 Brassica carinata HOM05D010860 ORTHO05D005733 8.1e-07 57.8 127 34.6
C09p53380 Brassica napus HOM05D010860 ORTHO05D005733 1.4e-06 57.0 127 34.6
CARHR274330 Cardamine hirsuta HOM05D010860 ORTHO05D005733 1.4e-06 57.0 133 28.6
CAN.G1001.28 Capsicum annuum HOM05D003943 ORTHO05D005733 3.1e-06 55.8 110 36.4


User provided reference genes

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