Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B02471 Eucalyptus grandis HOM05D005177 ORTHO05D006175 1.7e-235 818.9 405 100.0
QL01p037260 Quercus lobata HOM05D005177 ORTHO05D006175 4.5e-127 458.8 371 61.5
Prupe.6G094900 Prunus persica HOM05D005177 ORTHO05D006175 2.2e-126 456.4 402 59.0
PGR102G1116 Punica granatum HOM05D005177 ORTHO05D006175 2.2e-126 456.4 379 61.2
MD03G1105200 Malus domestica HOM05D005177 ORTHO05D006175 2.7e-124 449.5 406 59.1
RcHm_v2.0_Chr5g0060611 Rosa chinensis HOM05D005177 ORTHO05D006175 1.4e-120 437.2 398 57.0
Cfa011363 Carpinus fangiana HOM05D005177 ORTHO05D006175 5.3e-120 435.3 388 60.6
Dinv32787 Davidia involucrata HOM05D005177 ORTHO05D006175 7.6e-119 431.4 385 56.6
Thecc.09G260100 Theobroma cacao HOM05D005177 ORTHO05D006175 1.7e-118 430.3 399 56.4
COL.COLO4_25245 Corchorus olitorius HOM05D005177 ORTHO05D006175 3.2e-117 426.0 388 56.7
Gorai.005G207000 Gossypium raimondii HOM05D005177 ORTHO05D006175 1.6e-116 423.7 414 55.1
Duzib168G0988 Durio zibethinus HOM05D005177 ORTHO05D006175 2.1e-116 423.3 386 57.5
Gohir.D02G184700 Gossypium hirsutum HOM05D005177 ORTHO05D006175 2.1e-116 423.3 412 54.6
Manes.11G141500 Manihot esculenta HOM05D005177 ORTHO05D006175 3.0e-115 419.5 406 54.7
CANSAT54G2759 Cannabis sativa HOM05D005177 ORTHO05D006175 3.3e-114 416.0 382 55.8
TWI31G0237 Tripterygium wilfordii HOM05D005177 ORTHO05D006175 4.8e-113 412.1 376 54.5
TAR636G0661 Trochodendron aralioides HOM05D005177 ORTHO05D006175 6.2e-113 411.8 417 51.3
Actinidia03746 Actinidia chinensis HOM05D005177 ORTHO05D006175 8.2e-113 411.4 373 57.1
Migut.D02184 Erythranthe guttata HOM05D005177 ORTHO05D006175 1.8e-112 410.2 395 51.4
Nitab4.5_0002129g0070 Nicotiana tabacum HOM05D005177 ORTHO05D006175 1.8e-112 410.2 383 53.5
TWI79G0119 Tripterygium wilfordii HOM05D005177 ORTHO05D006175 5.3e-112 408.7 375 54.4
Atru.chr3.3689 Acer truncatum HOM05D005177 ORTHO05D006175 1.7e-110 403.7 379 53.3
Nn2g10682 Nelumbo nucifera HOM05D005177 ORTHO05D006175 6.5e-110 401.7 403 52.9
Cpa.g.sc139.70 Carica papaya HOM05D005177 ORTHO05D006175 1.9e-109 400.2 394 52.5
Duzib170G1166 Durio zibethinus HOM05D005177 ORTHO05D006175 2.5e-109 399.8 422 51.2
GSVIVG01025137001 Vitis vinifera HOM05D005177 ORTHO05D006175 7.1e-109 398.3 375 54.7
Glyma.11G153378 Glycine max HOM05D005177 ORTHO05D006175 1.2e-108 397.5 367 53.7
MSTRG.18639 Avicennia marina HOM05D005177 ORTHO05D006175 1.6e-108 397.1 395 51.1
Cc01_g11530 Coffea canephora HOM05D005177 ORTHO05D006175 3.5e-108 396.0 398 52.3
VMungo1127G2232 Vigna mungo HOM05D005177 ORTHO05D006175 3.5e-108 396.0 379 53.3
Phvul.011G072700 Phaseolus vulgaris HOM05D005177 ORTHO05D006175 8.7e-107 391.3 367 51.8
PGSC0003DMG400027405 Solanum tuberosum HOM05D005177 ORTHO05D006175 2.5e-106 389.8 390 52.1
Solyc11g072400.3 Solanum lycopersicum HOM05D005177 ORTHO05D006175 2.2e-105 386.7 374 52.1
Oeu005908.1 Olea europaea HOM05D005177 ORTHO05D006175 8.2e-105 384.8 400 50.0
vmacro14462 Vaccinium macrocarpon HOM05D005177 ORTHO05D006175 1.1e-104 384.4 377 52.8
Psat0s137g0200 Pisum sativum HOM05D005177 ORTHO05D006175 5.3e-104 382.1 393 50.6
Aqoxy4G03211 Aquilegia oxysepala HOM05D005177 ORTHO05D006175 9.0e-104 381.3 400 47.2
Sopen11g030050 Solanum pennellii HOM05D005177 ORTHO05D006175 2.6e-103 379.8 374 50.8
TPR.G14917 Trifolium pratense HOM05D005177 ORTHO05D006175 3.4e-103 379.4 404 49.8
unitig_899.g14907 Utricularia gibba HOM05D005177 ORTHO05D006175 4.5e-103 379.0 399 47.6
PSO339G4756 Papaver somniferum HOM05D005177 ORTHO05D006175 5.9e-103 378.6 389 49.6
Lj3g0023073 Lotus japonicus HOM05D005177 ORTHO05D006175 2.5e-101 373.2 425 46.8
FvH4_3g33260 Fragaria vesca HOM05D005177 ORTHO05D006175 3.2e-101 372.9 376 52.1
Lalb_Chr01g0004161 Lupinus albus HOM05D005177 ORTHO05D006175 3.2e-101 372.9 369 52.6
Ciclev10028554m.g Citrus clementina HOM05D005177 ORTHO05D006175 9.4e-101 371.3 370 51.4
Rhsim01G0220100 Rhododendron simsii HOM05D005177 ORTHO05D006175 1.2e-100 370.9 364 50.8
CAN.G553.3 Capsicum annuum HOM05D005177 ORTHO05D006175 1.4e-99 367.5 289 59.5
PSO063G2407 Papaver somniferum HOM05D005177 ORTHO05D006175 3.0e-99 366.3 413 46.7
Cfa011364 Carpinus fangiana HOM05D005177 ORTHO05D006175 6.7e-99 365.2 379 50.1
DCAR_006046 Daucus carota HOM05D005177 ORTHO05D006175 8.8e-99 364.8 356 52.0
RcHm_v2.0_Chr5g0060621 Rosa chinensis HOM05D005177 ORTHO05D006175 1.1e-98 364.4 395 50.4
Medtr4g060790 Medicago truncatula HOM05D005177 ORTHO05D006175 5.7e-98 362.1 393 49.1
Haze_23911 Corylus avellana HOM05D005177 ORTHO05D006175 2.2e-97 360.1 393 52.7
THA.LOC104814837 Tarenaya hassleriana HOM05D005177 ORTHO05D006175 2.8e-97 359.8 382 49.0
Nitab4.5_0001802g0050 Nicotiana tabacum HOM05D005177 ORTHO05D006175 6.3e-97 358.6 351 52.1
Ah.01g015010 Amaranthus hybridus HOM05D005177 ORTHO05D006175 2.4e-96 356.7 368 49.2
arahy.Tifrunner.gnm1.ann1.X56S8K Arachis hypogaea HOM05D005177 ORTHO05D006175 4.1e-96 355.9 395 47.3
Hund08273 Selenicereus undatus HOM05D005177 ORTHO05D006175 4.1e-96 355.9 406 47.3
arahy.Tifrunner.gnm1.ann1.Q9R44R Arachis hypogaea HOM05D005177 ORTHO05D006175 9.1e-96 354.8 396 47.0
Peaxi162Scf00389g00939 Petunia axillaris HOM05D005177 ORTHO05D006175 1.5e-95 354.0 373 50.1
AL8G36980 Arabidopsis lyrata HOM05D005177 ORTHO05D006175 1.3e-94 350.9 370 49.2
SHI06048 Sapria himalayana HOM05D005177 ORTHO05D006175 1.3e-94 350.9 364 50.5
MELO3C025749.2 Cucumis melo HOM05D005177 ORTHO05D006175 2.9e-94 349.7 398 48.0
Sp6g21970 Schrenkiella parvula HOM05D005177 ORTHO05D006175 5.0e-94 349.0 383 47.8
AT5G60370 Arabidopsis thaliana HOM05D005177 ORTHO05D006175 8.5e-94 348.2 399 46.9
Sc06g0010530 Simmondsia chinensis HOM05D005177 ORTHO05D006175 8.5e-94 348.2 370 49.7
BcaB05g22637 Brassica carinata HOM05D000280 ORTHO05D000632 1.1e-93 347.8 393 46.8
CiPaw.13G107400 Carya illinoinensis HOM05D005177 ORTHO05D006175 1.1e-93 347.8 351 51.0
Carub.0008s2107 Capsella rubella HOM05D005177 ORTHO05D006175 1.4e-93 347.4 397 47.1
Thhalv10013696m.g Eutrema salsugineum HOM05D005177 ORTHO05D006175 2.5e-93 346.7 369 49.6
Lj3g0021588 Lotus japonicus HOM05D005177 ORTHO05D006175 1.6e-92 344.0 425 44.9
BcaC03g13978 Brassica carinata HOM05D005177 ORTHO05D006175 2.1e-92 343.6 375 46.9
Aa31LG1G12430 Aethionema arabicum HOM05D005177 ORTHO05D006175 2.7e-92 343.2 370 47.8
ClCG02G020960 Citrullus lanatus HOM05D005177 ORTHO05D006175 2.7e-92 343.2 381 47.8
CiPaw.13G107500 Carya illinoinensis HOM05D005177 ORTHO05D006175 3.6e-92 342.8 323 57.6
BolC2t07273H Brassica oleracea HOM05D005177 ORTHO05D006175 6.1e-92 342.0 388 46.9
BraA02t05734Z Brassica rapa HOM05D005177 ORTHO05D006175 7.9e-92 341.7 374 46.5
CiPaw.13G107600 Carya illinoinensis HOM05D005177 ORTHO05D006175 1.4e-91 340.9 279 57.7
Psat6g221840 Pisum sativum HOM05D005177 ORTHO05D006175 7.4e-90 335.1 412 44.2
CiPaw.13G107200 Carya illinoinensis HOM05D005177 ORTHO05D006175 9.7e-90 334.7 420 44.8
Haze_23912 Corylus avellana HOM05D005177 ORTHO05D006175 2.2e-89 333.6 383 47.5
Lsat_1_v5_gn_2_50980 Lactuca sativa HOM05D005177 ORTHO05D006175 3.7e-89 332.8 389 47.3
Dinv14445 Davidia involucrata HOM05D005177 ORTHO05D006175 6.3e-89 332.0 351 51.9
CsaV3_6G021650 Cucumis sativus L. HOM05D005177 ORTHO05D006175 1.1e-88 331.3 396 44.7
Os05g0123300 Oryza sativa ssp. japonica HOM05D005177 ORTHO05D006175 2.0e-87 327.0 386 45.3
Zm00001eb265420 Zea mays HOM05D005177 ORTHO05D006175 4.5e-87 325.9 382 44.0
AUR62006522 Chenopodium quinoa HOM05D005177 ORTHO05D006175 1.7e-86 323.9 375 45.6
SGA_v2.0_scaffold97G29176 Striga asiatica HOM05D005177 ORTHO05D006175 3.6e-84 316.2 370 47.0
Ca_11098_v3 Cicer arietinum L. HOM05D005177 ORTHO05D006175 6.1e-84 315.5 413 43.8
Sed0002828 Sechium edule HOM05D005177 ORTHO05D005441 8.0e-84 315.1 377 46.2
HanXRQChr14g0433031 Helianthus annuus HOM05D005177 ORTHO05D006175 6.7e-83 312.0 363 46.3
QL01p037225 Quercus lobata HOM05D005177 ORTHO05D006175 1.5e-82 310.8 352 48.3
EL10Ac9g22467 Beta vulgaris HOM05D005177 ORTHO05D006175 2.0e-82 310.5 400 42.8
ATR1159G017 Amborella trichopoda HOM05D005177 ORTHO05D006175 5.7e-82 308.9 415 41.2
Phvul.007G036300 Phaseolus vulgaris HOM05D005177 ORTHO05D006175 5.7e-82 308.9 348 47.4
Dinv01415 Davidia involucrata HOM05D005177 ORTHO05D006175 2.8e-81 306.6 254 57.5
Haze_23910 Corylus avellana HOM05D005177 ORTHO05D006175 9.1e-80 301.6 385 47.0
Gohir.A03G161400 Gossypium hirsutum HOM05D005177 ORTHO05D006175 4.5e-79 299.3 304 54.9
ECA238G1817 Erigeron canadensis HOM05D000382 ORTHO05D000391 1.3e-78 297.7 361 44.0
VMungo0251G1016 Vigna mungo HOM05D005177 ORTHO05D006175 1.3e-78 297.7 384 43.0
CSS0008980 Camellia sinensis var. sinensis HOM05D005177 ORTHO05D006175 5.0e-78 295.8 231 57.1
C02p11760 Brassica napus HOM05D005177 ORTHO05D006175 1.0e-75 288.1 255 52.9
QL01p037240 Quercus lobata HOM05D005177 ORTHO05D006175 3.0e-75 286.6 282 51.1
TPR.G4931 Trifolium pratense HOM05D005177 ORTHO05D006175 6.7e-75 285.4 406 40.6
FAN21G0634 Fragaria x ananassa HOM05D005177 ORTHO05D006175 4.8e-73 279.3 379 43.5
Pp3c24_6040 Physcomitrium patens HOM05D005177 ORTHO05D006175 6.3e-73 278.9 309 46.6
Medtr1g062090 Medicago truncatula HOM05D005177 ORTHO05D006175 1.1e-72 278.1 400 40.5
Mapoly0004s0234 Marchantia polymorpha HOM05D005177 ORTHO05D006175 1.4e-72 277.7 307 46.6
PSO339G4079 Papaver somniferum HOM05D005177 ORTHO05D006175 1.8e-72 277.3 276 48.2
PSO384G3506 Papaver somniferum HOM05D005177 ORTHO05D006175 1.6e-71 274.2 273 47.6
SMO143G0224 Selaginella moellendorffii HOM05D005177 ORTHO05D006175 2.9e-70 270.0 372 42.2
CDE04G2914 Ceratophyllum demersum HOM05D005177 ORTHO05D006175 4.2e-69 266.2 289 46.7
Lj5g0027081 Lotus japonicus HOM05D005177 ORTHO05D006175 9.4e-69 265.0 312 43.6
CARHR274040 Cardamine hirsuta HOM05D005177 ORTHO05D006175 8.6e-62 241.9 288 46.5
Lalb_Chr06g0165641 Lupinus albus HOM05D005177 ORTHO05D006175 2.6e-58 230.3 356 38.8
Ca_19242_v3 Cicer arietinum L. HOM05D005177 ORTHO05D006175 3.4e-58 229.9 199 54.8
CBR_g2921 Chara braunii HOM05D005177 ORTHO05D006175 1.4e-56 224.6 316 38.3
Lj2C1035T4 Lonicera japonica HOM05D005177 ORTHO05D006175 3.1e-56 223.4 189 54.5
MD11G1130000 Malus domestica HOM05D005177 ORTHO05D006175 2.0e-55 220.7 182 54.9
Lalb_Chr03g0027131 Lupinus albus HOM05D005177 ORTHO05D006175 6.6e-54 215.7 239 51.9
AUR62025012 Chenopodium quinoa HOM05D005177 ORTHO05D006175 8.9e-51 205.3 177 52.0
Glyma.20G125100 Glycine max HOM05D005177 ORTHO05D006175 2.1e-39 167.5 229 42.4
Lalb_Chr03g0027121 Lupinus albus HOM05D005177 ORTHO05D006175 6.6e-38 162.5 134 51.5
HPP92_013896 Vanilla planifolia HOM05D005177 ORTHO05D006175 8.6e-38 162.2 218 45.9
CDE07G1541 Ceratophyllum demersum HOM05D005177 ORTHO05D006175 7.3e-37 159.1 223 44.4
MD12G1113200 Malus domestica HOM05D005177 ORTHO05D006175 9.2e-32 142.1 103 61.2
MD03G1203800 Malus domestica HOM05D005177 ORTHO05D006175 1.6e-31 141.4 103 60.2
MD02G1279000 Malus domestica HOM05D005177 ORTHO05D006175 3.9e-30 136.7 103 60.2
Aqoxy230s004 Aquilegia oxysepala HOM05D000156 ORTHO05D002600 1.9e-29 134.4 114 55.3
SalBow7G3352 Salvia bowleyana HOM05D005177 ORTHO05D006175 1.1e-24 118.6 111 47.7
MD11G1130200 Malus domestica HOM05D005177 ORTHO05D008128 7.1e-24 115.9 102 62.7
AUR62033196 Chenopodium quinoa HOM05D005177 ORTHO05D006175 2.3e-22 110.9 98 50.0
SalBow2G1018 Salvia bowleyana HOM05D005177 ORTHO05D006175 2.3e-22 110.9 108 46.3
SalBow8G4533 Salvia bowleyana HOM05D005177 ORTHO05D006175 5.1e-22 109.8 89 55.1
AUR62037383 Chenopodium quinoa HOM05D005177 ORTHO05D006175 1.2e-20 105.1 98 45.9
Lj2A1035T47 Lonicera japonica HOM05D005177 ORTHO05D006175 4.0e-19 100.1 167 44.3
CDE07G0204 Ceratophyllum demersum HOM05D005177 ORTHO05D006175 4.4e-18 96.7 89 53.9
SEGI_18444 Sequoiadendron giganteum HOM05D005177 ORTHO05D006175 1.7e-17 94.7 115 44.3
SEGI_09926 Sequoiadendron giganteum HOM05D005177 ORTHO05D006175 1.7e-14 84.7 85 38.8
MD02G1245500 Malus domestica HOM05D005177 ORTHO05D006175 5.4e-08 63.2 40 72.5
Phvul.011G073000 Phaseolus vulgaris HOM05D005177 ORTHO05D006175 6.7e-06 56.2 43 58.1


User provided reference genes

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