Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B02468 Eucalyptus grandis HOM05D002419 ORTHO05D008128 1.9e-87 325.9 168 100.0
Cfa011364 Carpinus fangiana HOM05D005177 ORTHO05D006175 1.0e-45 187.2 174 56.3
Haze_23915 Corylus avellana HOM05D002419 ORTHO05D008128 1.0e-45 187.2 174 56.9
TWI75G1733 Tripterygium wilfordii HOM05D002419 ORTHO05D008128 1.4e-45 186.8 165 56.4
QL01p037215 Quercus lobata HOM05D002419 ORTHO05D008128 2.3e-45 186.0 174 56.3
Manes.11G141200 Manihot esculenta HOM05D002419 ORTHO05D008128 3.0e-45 185.7 164 57.9
CiPaw.13G107000 Carya illinoinensis HOM05D002419 ORTHO05D008128 8.8e-45 184.1 165 55.2
Atru.chr3.3691 Acer truncatum HOM05D002419 ORTHO05D008128 2.8e-43 179.1 167 56.3
PGR102G0399 Punica granatum HOM05D002419 ORTHO05D008128 4.8e-43 178.3 178 55.6
Potri.006G133800 Populus trichocarpa HOM05D002419 ORTHO05D008128 3.1e-42 175.6 167 56.9
RcHm_v2.0_Chr5g0060661 Rosa chinensis HOM05D002419 ORTHO05D008128 4.1e-42 175.3 167 53.9
GSVIVG01025134001 Vitis vinifera HOM05D002419 ORTHO05D008128 4.1e-42 175.3 161 56.5
Ca_06160_v3 Cicer arietinum L. HOM05D002419 ORTHO05D008128 2.6e-41 172.6 166 51.2
Dinv29347 Davidia involucrata HOM05D002419 ORTHO05D008128 2.6e-41 172.6 170 54.1
MD11G1129900 Malus domestica HOM05D002419 ORTHO05D008128 2.6e-41 172.6 173 53.8
FAN25G2109 Fragaria x ananassa HOM05D002419 ORTHO05D008128 3.5e-41 172.2 164 53.7
FAN16G1578 Fragaria x ananassa HOM05D002419 ORTHO05D008128 7.7e-41 171.0 170 51.8
Thecc.09G260200 Theobroma cacao HOM05D002419 ORTHO05D008128 1.3e-40 170.2 176 51.1
Glyma.14G041000 Glycine max HOM05D002419 ORTHO05D008128 1.7e-40 169.9 166 50.6
Lalb_Chr25g0283021 Lupinus albus HOM05D002419 ORTHO05D008128 1.7e-40 169.9 165 52.7
COL.COLO4_32908 Corchorus olitorius HOM05D002419 ORTHO05D008128 5.0e-40 168.3 172 52.9
Sabra06G0105100 Salix brachista HOM05D002419 ORTHO05D008128 5.0e-40 168.3 164 56.7
arahy.Tifrunner.gnm1.ann1.AUHN72 Arachis hypogaea HOM05D002419 ORTHO05D008128 6.5e-40 167.9 167 54.5
CSS0035547 Camellia sinensis var. sinensis HOM05D002419 ORTHO05D008128 6.5e-40 167.9 162 53.7
Actinidia03711 Actinidia chinensis HOM05D002419 ORTHO05D008128 1.5e-39 166.8 166 54.8
Lj2A1017T34 Lonicera japonica HOM05D002419 ORTHO05D008128 1.5e-39 166.8 174 52.3
Duzib170G1173 Durio zibethinus HOM05D002419 ORTHO05D008128 1.9e-39 166.4 161 53.4
Gorai.001G129900 Gossypium raimondii HOM05D002419 ORTHO05D008128 1.9e-39 166.4 167 53.9
COL.COLO4_25247 Corchorus olitorius HOM05D002419 ORTHO05D008128 4.2e-39 165.2 175 52.6
LjContig00564g0025850 Lotus japonicus HOM05D002419 ORTHO05D008128 7.2e-39 164.5 167 50.9
Prupe.6G094800 Prunus persica HOM05D002419 ORTHO05D008128 1.2e-38 163.7 160 54.4
Psat2g021880 Pisum sativum HOM05D002419 ORTHO05D008128 2.7e-38 162.5 164 50.0
Glyma.02G275000 Glycine max HOM05D002419 ORTHO05D008128 3.6e-38 162.2 166 49.4
Cpa.g.sc139.69 Carica papaya HOM05D002419 ORTHO05D008128 1.4e-37 160.2 175 48.6
Gohir.D07G120700 Gossypium hirsutum HOM05D002419 ORTHO05D008128 1.4e-37 160.2 166 52.4
TAR633G0359 Trochodendron aralioides HOM05D002419 ORTHO05D008128 1.4e-37 160.2 170 48.8
TPR.G11328 Trifolium pratense HOM05D002419 ORTHO05D008128 2.3e-37 159.5 162 50.0
Psat2g022480 Pisum sativum HOM05D002419 ORTHO05D008128 4.0e-37 158.7 164 50.0
Sabra03G0090700 Salix brachista HOM05D002419 ORTHO05D008128 4.0e-37 158.7 156 55.1
Gohir.A07G116300 Gossypium hirsutum HOM05D002419 ORTHO05D008128 6.7e-37 157.9 176 50.0
CsaV3_6G021630 Cucumis sativus L. HOM05D002419 ORTHO05D008128 8.8e-37 157.5 164 49.4
Sc15g0001550 Simmondsia chinensis HOM05D002419 ORTHO05D008128 8.8e-37 157.5 159 50.3
Aqoxy6G01314 Aquilegia oxysepala HOM05D002419 ORTHO05D008128 1.1e-36 157.1 160 49.4
BcaC04g19693 Brassica carinata HOM05D002419 ORTHO05D008128 1.1e-36 157.1 170 50.0
A10p17550 Brassica napus HOM05D002419 ORTHO05D005441 1.1e-36 157.1 164 49.4
vmacro14413 Vaccinium macrocarpon HOM05D002419 ORTHO05D008128 1.5e-36 156.8 163 54.0
BolC9t58170H Brassica oleracea HOM05D002419 ORTHO05D005441 2.6e-36 156.0 170 49.4
Nitab4.5_0000106g0340 Nicotiana tabacum HOM05D002419 ORTHO05D008128 2.6e-36 156.0 160 51.2
PSO339G2915 Papaver somniferum HOM05D002419 ORTHO05D008128 2.6e-36 156.0 157 52.2
BraA10t43836Z Brassica rapa HOM05D002419 ORTHO05D005441 3.3e-36 155.6 170 48.8
arahy.Tifrunner.gnm1.ann1.2RF374 Arachis hypogaea HOM05D002419 ORTHO05D008128 5.7e-36 154.8 161 49.1
THA.LOC104814842 Tarenaya hassleriana HOM05D002419 ORTHO05D008128 5.7e-36 154.8 168 49.4
BcaB08g36333 Brassica carinata HOM05D002419 ORTHO05D008128 7.5e-36 154.5 164 48.2
C09p52960 Brassica napus HOM05D002419 ORTHO05D005441 7.5e-36 154.5 170 50.0
Medtr5g087960 Medicago truncatula HOM05D002419 ORTHO05D008128 7.5e-36 154.5 163 47.2
Carub.0008s2104 Capsella rubella HOM05D002419 ORTHO05D008128 9.7e-36 154.1 165 49.1
BraA03t10435Z Brassica rapa HOM05D002419 ORTHO05D008128 1.3e-35 153.7 164 47.6
PSO801G0184 Papaver somniferum HOM05D002419 ORTHO05D008128 1.3e-35 153.7 157 51.0
Solyc06g075000.3 Solanum lycopersicum HOM05D002419 ORTHO05D008128 1.3e-35 153.7 161 50.3
Sopen06g031430 Solanum pennellii HOM05D002419 ORTHO05D008128 1.3e-35 153.7 161 50.3
PGSC0003DMG400012002 Solanum tuberosum HOM05D002419 ORTHO05D008128 1.3e-35 153.7 171 49.1
TAR636G2038 Trochodendron aralioides HOM05D002419 ORTHO05D008128 1.3e-35 153.7 171 49.7
AT5G60335 Arabidopsis thaliana HOM05D002419 ORTHO05D008128 2.8e-35 152.5 166 49.4
DCAR_006043 Daucus carota HOM05D002419 ORTHO05D008128 3.7e-35 152.1 160 49.4
AL8G36950 Arabidopsis lyrata HOM05D002419 ORTHO05D008128 4.8e-35 151.8 166 49.4
CAN.G2109.1 Capsicum annuum HOM05D002419 ORTHO05D008128 8.2e-35 151.0 161 49.1
CARHR274000 Cardamine hirsuta HOM05D002419 ORTHO05D008128 8.2e-35 151.0 175 44.6
ClCG02G020940 Citrullus lanatus HOM05D002419 ORTHO05D008128 1.1e-34 150.6 143 51.0
Peaxi162Scf00029g01714 Petunia axillaris HOM05D002419 ORTHO05D008128 1.1e-34 150.6 162 50.6
TPR.G11332 Trifolium pratense HOM05D002419 ORTHO05D008128 1.1e-34 150.6 164 47.6
VMungo0647G2488 Vigna mungo HOM05D002419 ORTHO05D008128 1.1e-34 150.6 166 46.4
Thhalv10014838m.g Eutrema salsugineum HOM05D002419 ORTHO05D008128 1.4e-34 150.2 164 47.6
Oeu049265.1 Olea europaea HOM05D002419 ORTHO05D008128 1.4e-34 150.2 165 49.7
Rhsim01G0213200 Rhododendron simsii HOM05D002419 ORTHO05D008128 1.8e-34 149.8 161 51.6
TAR636G3373 Trochodendron aralioides HOM05D002419 ORTHO05D008128 1.8e-34 149.8 171 48.5
Phvul.008G206400 Phaseolus vulgaris HOM05D002419 ORTHO05D008128 2.4e-34 149.4 166 46.4
Rhsim01G0213400 Rhododendron simsii HOM05D002419 ORTHO05D008128 3.1e-34 149.1 161 50.9
EL10Ac8g19852 Beta vulgaris HOM05D002419 ORTHO05D008128 4.1e-34 148.7 157 52.2
BolC3t13754H Brassica oleracea HOM05D002419 ORTHO05D005441 4.1e-34 148.7 173 45.1
Phvul.008G172000 Phaseolus vulgaris HOM05D002419 ORTHO05D008128 4.1e-34 148.7 167 45.5
ATR0680G185 Amborella trichopoda HOM05D002419 ORTHO05D008128 5.3e-34 148.3 155 51.6
A03p11220 Brassica napus HOM05D002419 ORTHO05D008128 7.0e-34 147.9 162 46.3
Lj2A891T18 Lonicera japonica HOM05D002419 ORTHO05D008128 9.1e-34 147.5 142 52.1
MBI04_g27072_MAGBIO Magnolia biondii HOM05D002419 ORTHO05D008128 9.1e-34 147.5 173 48.0
Aqoxy2G01471 Aquilegia oxysepala HOM05D002419 ORTHO05D008128 1.6e-33 146.7 161 44.7
Oeu009377.1 Olea europaea HOM05D002419 ORTHO05D008128 1.6e-33 146.7 169 46.7
Sp6g21940 Schrenkiella parvula HOM05D002419 ORTHO05D008128 1.6e-33 146.7 175 44.6
Hund27375 Selenicereus undatus HOM05D002419 ORTHO05D008128 1.6e-33 146.7 169 44.4
CANSAT54G1052 Cannabis sativa HOM05D002419 ORTHO05D008128 4.5e-33 145.2 165 46.1
Cc01_g10710 Coffea canephora HOM05D002419 ORTHO05D008128 4.5e-33 145.2 157 48.4
Aa31LG1G12400 Aethionema arabicum HOM05D002419 ORTHO05D005441 1.0e-32 144.1 162 46.3
SHI33804 Sapria himalayana HOM05D002419 ORTHO05D008128 1.0e-32 144.1 161 49.7
AUR62027574 Chenopodium quinoa HOM05D002419 ORTHO05D008128 1.3e-32 143.7 164 50.0
ECA248G1487 Erigeron canadensis HOM05D002419 ORTHO05D008128 1.3e-32 143.7 158 46.8
Migut.N02582 Erythranthe guttata HOM05D002419 ORTHO05D008128 1.9e-31 139.8 171 47.4
HanXRQChr01g0019131 Helianthus annuus HOM05D002419 ORTHO05D008128 1.9e-31 139.8 156 48.1
SalBow7G0817 Salvia bowleyana HOM05D002419 ORTHO05D008128 2.5e-31 139.4 171 45.0
Lsat_1_v5_gn_1_63680 Lactuca sativa HOM05D002419 ORTHO05D008128 3.2e-31 139.0 167 46.1
FAN11G3570 Fragaria x ananassa HOM05D002273 ORTHO05D008128 1.6e-30 136.7 121 55.4
FvH4_3g33270 Fragaria vesca HOM05D002273 ORTHO05D008128 2.1e-30 136.3 121 54.5
FAN21G3525 Fragaria x ananassa HOM05D002419 ORTHO05D008128 2.7e-30 136.0 122 55.7
Oeu049264.1 Olea europaea HOM05D002419 ORTHO05D008128 1.4e-29 133.7 155 47.7
Ah.01g024490 Amaranthus hybridus HOM05D002419 ORTHO05D008128 2.3e-29 132.9 140 52.1
CDE09G0261 Ceratophyllum demersum HOM05D007330 ORTHO05D008128 1.2e-28 130.6 164 42.7
MSTRG.17782 Avicennia marina HOM05D002419 ORTHO05D008128 3.4e-28 129.0 140 47.9
SEGI_36576 Sequoiadendron giganteum HOM05D002419 ORTHO05D008128 1.3e-27 127.1 164 44.5
Nitab4.5_0000511g0130 Nicotiana tabacum HOM05D002419 ORTHO05D008128 8.3e-27 124.4 131 51.9
Phvul.008G171900 Phaseolus vulgaris HOM05D002419 ORTHO05D008128 5.4e-26 121.7 167 40.1
HPP92_005092 Vanilla planifolia HOM05D002419 ORTHO05D008128 1.1e-23 114.0 163 45.4
unitig_699.g19262 Utricularia gibba HOM05D001486 ORTHO05D003845 9.4e-23 110.9 157 39.5
Zm00001eb211510 Zea mays HOM05D002419 ORTHO05D008128 1.6e-22 110.2 172 39.0
SGA_v2.0_scaffold25G11093 Striga asiatica HOM05D002419 ORTHO05D008128 3.6e-22 109.0 167 39.5
AUR62035785 Chenopodium quinoa HOM05D002419 ORTHO05D008128 4.4e-20 102.1 96 55.2
Zm00001eb088630 Zea mays HOM05D002419 ORTHO05D008128 1.3e-19 100.5 125 45.6
MELO3C025746.2 Cucumis melo HOM05D002419 ORTHO05D008128 2.2e-19 99.8 81 55.6
CBR_g17117 Chara braunii HOM05D002419 ORTHO05D008128 2.4e-18 96.3 154 33.1
BcaB01g04653 Brassica carinata HOM05D002419 ORTHO05D008128 1.2e-17 94.0 86 51.2
Pp3c27_1710 Physcomitrium patens HOM05D002419 ORTHO05D008128 4.5e-17 92.0 154 33.1
SMO356G0194 Selaginella moellendorffii HOM05D002419 ORTHO05D008128 1.0e-16 90.9 158 34.8
AagrBONN_evm.TU.Sc2ySwM_228.5883 Anthoceros agrestis HOM05D002419 ORTHO05D008128 2.5e-15 86.3 138 34.8
Sed0027804 Sechium edule HOM05D002419 ORTHO05D008128 8.0e-14 81.3 165 33.9
Mapoly0013s0067 Marchantia polymorpha HOM05D002419 ORTHO05D008128 2.3e-13 79.7 157 32.5
AagrBONN_evm.TU.Sc2ySwM_228.5888 Anthoceros agrestis HOM05D002419 ORTHO05D008128 1.7e-11 73.6 163 29.4
MD11G1130200 Malus domestica HOM05D005177 ORTHO05D008128 3.7e-11 72.4 76 46.1
PRCOL_00002156 Prasinoderma coloniale HOM05D002419 ORTHO05D008128 6.4e-11 71.6 149 28.9
Ciclev10029934m.g Citrus clementina HOM05D002419 ORTHO05D008128 3.5e-09 65.9 39 69.2
BcaB01g04652 Brassica carinata HOM05D000125 ORTHO05D008128 1.3e-08 63.9 67 47.8
CARHR181070 Cardamine hirsuta HOM05D002419 ORTHO05D008128 1.7e-08 63.5 60 51.7
MCO16G180 Micromonas commoda HOM05D002419 ORTHO05D008128 1.9e-07 60.1 96 34.4
Cre12.g560100 Chlamydomonas reinhardtii HOM05D002419 ORTHO05D008128 7.3e-07 58.2 121 29.8


User provided reference genes

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