Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B02299 Eucalyptus grandis HOM05D001632 ORTHO05D001534 2.0e-74 282.7 186 100.0
Eucgr.B02300 Eucalyptus grandis HOM05D001632 ORTHO05D001534 1.4e-43 180.3 109 85.3
CiPaw.14G064000 Carya illinoinensis HOM05D001632 ORTHO05D001534 5.0e-17 92.0 110 48.2
Lalb_Chr01g0003451 Lupinus albus HOM05D001632 ORTHO05D001534 1.1e-16 90.9 108 49.1
CSS0028321 Camellia sinensis var. sinensis HOM05D001632 ORTHO05D001534 1.5e-16 90.5 105 48.6
CANSAT54G1005 Cannabis sativa HOM05D001632 ORTHO05D001534 1.5e-16 90.5 95 52.6
Sabra09G0027000 Salix brachista HOM05D001632 ORTHO05D001534 2.5e-16 89.7 110 49.1
QL01p028111 Quercus lobata HOM05D001632 ORTHO05D001534 5.6e-16 88.6 110 49.1
PGR102G0718 Punica granatum HOM05D001632 ORTHO05D001534 2.8e-15 86.3 101 50.5
Duzib168G1460 Durio zibethinus HOM05D001632 ORTHO05D001534 1.0e-14 84.3 71 59.2
Dinv17061 Davidia involucrata HOM05D001632 ORTHO05D001534 1.8e-14 83.6 110 45.5
Dinv43005 Davidia involucrata HOM05D001632 ORTHO05D001534 1.8e-14 83.6 110 45.5
Dinv43092 Davidia involucrata HOM05D001632 ORTHO05D001534 1.8e-14 83.6 110 45.5
COL.COLO4_18596 Corchorus olitorius HOM05D001632 ORTHO05D001534 3.1e-14 82.8 110 44.5
Thecc.09G313100 Theobroma cacao HOM05D001632 ORTHO05D001534 4.0e-14 82.4 110 44.5
MD03G1084800 Malus domestica HOM05D001632 ORTHO05D001534 8.9e-14 81.3 96 50.0
Prupe.6G068100 Prunus persica HOM05D001632 ORTHO05D001534 8.9e-14 81.3 95 48.4
Cfa011582 Carpinus fangiana HOM05D001632 ORTHO05D001534 1.2e-13 80.9 110 43.6
RcHm_v2.0_Chr5g0066861 Rosa chinensis HOM05D001632 ORTHO05D001534 1.2e-13 80.9 110 42.7
GSVIVG01024865001 Vitis vinifera HOM05D001632 ORTHO05D001534 1.2e-13 80.9 71 56.3
FAN16G2675 Fragaria x ananassa HOM05D001632 ORTHO05D001534 1.5e-13 80.5 110 43.6
FvH4_3g37140 Fragaria vesca HOM05D001632 ORTHO05D001534 2.0e-13 80.1 110 42.7
FAN11G0574 Fragaria x ananassa HOM05D001632 ORTHO05D001534 2.0e-13 80.1 110 42.7
FAN21G2483 Fragaria x ananassa HOM05D001632 ORTHO05D001534 2.0e-13 80.1 110 43.6
Actinidia34432 Actinidia chinensis HOM05D001632 ORTHO05D001534 3.4e-13 79.3 75 54.7
Haze_24199 Corylus avellana HOM05D001632 ORTHO05D001534 5.8e-13 78.6 110 43.6
HanXRQChr05g0135331 Helianthus annuus HOM05D001632 ORTHO05D001534 7.5e-13 78.2 73 58.9
ECA236G4859 Erigeron canadensis HOM05D001632 ORTHO05D001534 9.8e-13 77.8 73 53.4
FAN25G0711 Fragaria x ananassa HOM05D001632 ORTHO05D001534 9.8e-13 77.8 110 42.7
Potri.001G245800 Populus trichocarpa HOM05D001632 ORTHO05D001534 9.8e-13 77.8 71 57.7
Nitab4.5_0004076g0010 Nicotiana tabacum HOM05D001632 ORTHO05D001534 1.7e-12 77.0 71 52.1
TWI31G0964 Tripterygium wilfordii HOM05D001632 ORTHO05D001534 1.7e-12 77.0 109 40.4
arahy.Tifrunner.gnm1.ann1.IEEP0H Arachis hypogaea HOM05D001632 ORTHO05D001534 2.2e-12 76.6 101 47.5
Cc01_g13470 Coffea canephora HOM05D001632 ORTHO05D001534 2.2e-12 76.6 110 42.7
arahy.Tifrunner.gnm1.ann1.WGY3ZU Arachis hypogaea HOM05D001632 ORTHO05D001534 2.9e-12 76.3 101 46.5
Nitab4.5_0000839g0150 Nicotiana tabacum HOM05D001632 ORTHO05D001534 3.7e-12 75.9 71 52.1
DCAR_005906 Daucus carota HOM05D001632 ORTHO05D001534 4.9e-12 75.5 71 54.9
Solyc06g076440.3 Solanum lycopersicum HOM05D001632 ORTHO05D001534 4.9e-12 75.5 71 52.1
PGSC0003DMG400030333 Solanum tuberosum HOM05D001632 ORTHO05D001534 4.9e-12 75.5 71 52.1
Duzib170G0236 Durio zibethinus HOM05D001632 ORTHO05D001534 6.4e-12 75.1 111 41.4
Sed0010254 Sechium edule HOM05D001632 ORTHO05D001534 6.4e-12 75.1 70 52.9
Manes.02G127000 Manihot esculenta HOM05D001632 ORTHO05D001534 8.3e-12 74.7 71 52.1
Peaxi162Scf00481g00063 Petunia axillaris HOM05D001632 ORTHO05D001534 8.3e-12 74.7 71 50.7
unitig_746.g26717 Utricularia gibba HOM05D001632 ORTHO05D001534 1.1e-11 74.3 70 50.0
Sopen06g032850 Solanum pennellii HOM05D001632 ORTHO05D001534 1.4e-11 73.9 71 52.1
TAR633G2821 Trochodendron aralioides HOM05D001632 ORTHO05D001534 1.9e-11 73.6 96 45.8
PSO384G4497 Papaver somniferum HOM05D001632 ORTHO05D001534 3.2e-11 72.8 73 45.2
TWI75G0431 Tripterygium wilfordii HOM05D001632 ORTHO05D001534 3.2e-11 72.8 108 38.0
CAN.G394.80 Capsicum annuum HOM05D001632 ORTHO05D001534 4.1e-11 72.4 71 49.3
Sed0003855 Sechium edule HOM05D001632 ORTHO05D001534 5.4e-11 72.0 70 50.0
CsaV3_1G034600 Cucumis sativus L. HOM05D001632 ORTHO05D001534 7.0e-11 71.6 70 50.0
CsaV3_1G035690 Cucumis sativus L. HOM05D001632 ORTHO05D001534 7.0e-11 71.6 70 50.0
Rhsim01G0233000 Rhododendron simsii HOM05D001632 ORTHO05D001534 7.0e-11 71.6 98 41.8
ClCG03G001210 Citrullus lanatus HOM05D001632 ORTHO05D001534 9.2e-11 71.2 70 51.4
PSO676G0015 Papaver somniferum HOM05D001632 ORTHO05D001534 9.2e-11 71.2 71 43.7
Phvul.011G061200 Phaseolus vulgaris HOM05D001632 ORTHO05D001534 9.2e-11 71.2 70 54.3
VMungo1127G0631 Vigna mungo HOM05D001632 ORTHO05D001534 9.2e-11 71.2 95 46.3
MELO3C020600.2 Cucumis melo HOM05D001632 ORTHO05D001534 1.2e-10 70.9 70 48.6
TPR.G23568 Trifolium pratense HOM05D001632 ORTHO05D001534 1.2e-10 70.9 111 40.5
Lj3g0027041 Lotus japonicus HOM05D001632 ORTHO05D001534 1.6e-10 70.5 95 46.3
Actinidia23913 Actinidia chinensis HOM05D001632 ORTHO05D001534 2.0e-10 70.1 75 50.7
Sc12g0001170 Simmondsia chinensis HOM05D001632 ORTHO05D001534 2.7e-10 69.7 97 38.1
Gohir.A07G100950 Gossypium hirsutum HOM05D001632 ORTHO05D001534 3.5e-10 69.3 94 42.6
A04p22420 Brassica napus HOM05D001632 ORTHO05D001534 4.6e-10 68.9 95 38.9
Gohir.A03G046000 Gossypium hirsutum HOM05D001632 ORTHO05D001534 4.6e-10 68.9 78 48.7
Gohir.D03G121200 Gossypium hirsutum HOM05D001632 ORTHO05D001534 4.6e-10 68.9 78 48.7
Gorai.001G112900 Gossypium raimondii HOM05D001632 ORTHO05D001534 4.6e-10 68.9 95 44.2
Gorai.003G128200 Gossypium raimondii HOM05D001632 ORTHO05D001534 4.6e-10 68.9 78 48.7
Ciclev10028602m.g Citrus clementina HOM05D001632 ORTHO05D001534 6.0e-10 68.6 110 41.8
Psat7g211200 Pisum sativum HOM05D001632 ORTHO05D001534 6.0e-10 68.6 108 40.7
Thhalv10016787m.g Eutrema salsugineum HOM05D001632 ORTHO05D001534 1.3e-09 67.4 106 35.8
SalBow6G0891 Salvia bowleyana HOM05D001632 ORTHO05D001534 1.3e-09 67.4 70 47.1
Aqoxy1G00804 Aquilegia oxysepala HOM05D001632 ORTHO05D001534 1.7e-09 67.0 110 39.1
TPR.G23581 Trifolium pratense HOM05D001632 ORTHO05D001534 1.7e-09 67.0 96 43.8
EL10Ac7g16084 Beta vulgaris HOM05D001632 ORTHO05D001534 2.3e-09 66.6 72 48.6
BraA04t17790Z Brassica rapa HOM05D001632 ORTHO05D001534 2.3e-09 66.6 95 37.9
Glyma.11G135500 Glycine max HOM05D001632 ORTHO05D001534 2.3e-09 66.6 95 45.3
Aa31LG5G7020 Aethionema arabicum HOM05D001632 ORTHO05D001534 3.0e-09 66.2 103 38.8
THA.LOC104800702 Tarenaya hassleriana HOM05D001632 ORTHO05D001534 3.0e-09 66.2 72 44.4
BcaC02g08087 Brassica carinata HOM05D001632 ORTHO05D001534 5.0e-09 65.5 95 37.9
BolC4t27375H Brassica oleracea HOM05D001632 ORTHO05D001534 5.0e-09 65.5 95 37.9
Ca_20613_v3 Cicer arietinum L. HOM05D001632 ORTHO05D001534 5.0e-09 65.5 97 42.3
Ca_29567_v3 Cicer arietinum L. HOM05D001632 ORTHO05D001534 5.0e-09 65.5 97 42.3
Migut.D00869 Erythranthe guttata HOM05D001632 ORTHO05D001534 5.0e-09 65.5 70 44.3
AL4G23970 Arabidopsis lyrata HOM05D001632 ORTHO05D001534 6.6e-09 65.1 112 33.9
AT2G29410 Arabidopsis thaliana HOM05D001632 ORTHO05D001534 8.6e-09 64.7 97 40.2
Sp4g12170 Schrenkiella parvula HOM05D001632 ORTHO05D001534 8.6e-09 64.7 72 45.8
BcaB06g28305 Brassica carinata HOM05D001632 ORTHO05D001534 1.1e-08 64.3 72 45.8
Carub.0004s1047 Capsella rubella HOM05D001632 ORTHO05D001534 1.5e-08 63.9 72 44.4
THA.LOC104815770 Tarenaya hassleriana HOM05D001632 ORTHO05D001534 1.5e-08 63.9 77 42.9
C04p58570 Brassica napus HOM05D001632 ORTHO05D001534 1.9e-08 63.5 72 44.4
CARHR122690 Cardamine hirsuta HOM05D001632 ORTHO05D001534 1.9e-08 63.5 72 43.1
DCAR_007405 Daucus carota HOM05D001632 ORTHO05D001534 1.9e-08 63.5 71 49.3
Sp4g28830 Schrenkiella parvula HOM05D001632 ORTHO05D001534 7.3e-08 61.6 70 42.9
CDE09G0265 Ceratophyllum demersum HOM05D001632 ORTHO05D001534 1.2e-07 60.8 73 39.7
AT2G46800 Arabidopsis thaliana HOM05D001632 ORTHO05D001534 1.6e-07 60.5 70 42.9
MELO3C022448.2 Cucumis melo HOM05D001632 ORTHO05D001534 1.6e-07 60.5 70 42.9
CsaV3_6G006770 Cucumis sativus L. HOM05D001632 ORTHO05D001534 1.6e-07 60.5 70 42.9
Oeu032143.1 Olea europaea HOM05D001632 ORTHO05D001534 1.6e-07 60.5 56 51.8
AL4G46270 Arabidopsis lyrata HOM05D001632 ORTHO05D001534 2.1e-07 60.1 70 42.9
MBI05_g02664_MAGBIO Magnolia biondii HOM05D001632 ORTHO05D001534 2.1e-07 60.1 71 39.4
Medtr4g064893 Medicago truncatula HOM05D001632 ORTHO05D001534 2.1e-07 60.1 71 47.9
A03p25760 Brassica napus HOM05D001632 ORTHO05D001534 2.8e-07 59.7 70 42.9
BraA03t11790Z Brassica rapa HOM05D001632 ORTHO05D001534 2.8e-07 59.7 70 42.9
Thhalv10001478m.g Eutrema salsugineum HOM05D001632 ORTHO05D001534 2.8e-07 59.7 70 42.9
BcaB06g29472 Brassica carinata HOM05D001632 ORTHO05D001534 3.6e-07 59.3 70 42.9
BcaC02g07002 Brassica carinata HOM05D001632 ORTHO05D001534 3.6e-07 59.3 70 42.9
BcaNung03899 Brassica carinata HOM05D001632 ORTHO05D001534 3.6e-07 59.3 70 42.9
A04p34630 Brassica napus HOM05D001632 ORTHO05D001534 3.6e-07 59.3 70 42.9
BolC4t28730H Brassica oleracea HOM05D001632 ORTHO05D001534 3.6e-07 59.3 70 42.9
BraA04t18921Z Brassica rapa HOM05D001632 ORTHO05D001534 3.6e-07 59.3 70 42.9
Aa31LG1G28170 Aethionema arabicum HOM05D001632 ORTHO05D001534 4.7e-07 58.9 70 42.9
Carub.0004s2951 Capsella rubella HOM05D001632 ORTHO05D001534 4.7e-07 58.9 70 42.9
ClCG06G000910 Citrullus lanatus HOM05D001632 ORTHO05D001534 6.2e-07 58.5 70 41.4
SEGI_37426 Sequoiadendron giganteum HOM05D001632 ORTHO05D001534 8.0e-07 58.2 70 42.9
MSTRG.2035 Avicennia marina HOM05D001632 ORTHO05D001534 1.1e-06 57.8 108 35.2
Eucgr.E01082 Eucalyptus grandis HOM05D001632 ORTHO05D001534 1.1e-06 57.8 70 40.0
Peaxi162Scf00347g00120 Petunia axillaris HOM05D001632 ORTHO05D001534 1.4e-06 57.4 70 41.4
Nitab4.5_0001151g0150 Nicotiana tabacum HOM05D001632 ORTHO05D001534 1.8e-06 57.0 70 41.4
Nitab4.5_0002988g0010 Nicotiana tabacum HOM05D001632 ORTHO05D001534 1.8e-06 57.0 70 41.4
Oeu022025.1 Olea europaea HOM05D001632 ORTHO05D001534 1.8e-06 57.0 110 33.6
TWI60G0379 Tripterygium wilfordii HOM05D001632 ORTHO05D001534 1.8e-06 57.0 70 41.4
arahy.Tifrunner.gnm1.ann1.NB6CJE Arachis hypogaea HOM05D001632 ORTHO05D001534 2.3e-06 56.6 73 42.5
Os05g0128400 Oryza sativa ssp. japonica HOM05D001632 ORTHO05D001534 2.3e-06 56.6 70 42.9
Peaxi162Scf00530g00018 Petunia axillaris HOM05D001632 ORTHO05D001534 2.3e-06 56.6 70 40.0
ECA240G3140 Erigeron canadensis HOM05D001632 ORTHO05D001534 3.1e-06 56.2 70 38.6
C02p08500 Brassica napus HOM05D001632 ORTHO05D001534 4.0e-06 55.8 92 37.0
CARHR142140 Cardamine hirsuta HOM05D001632 ORTHO05D001534 4.0e-06 55.8 70 41.4
Duzib084G0946 Durio zibethinus HOM05D001632 ORTHO05D001534 4.0e-06 55.8 71 39.4
Migut.E01360 Erythranthe guttata HOM05D001632 ORTHO05D001534 4.0e-06 55.8 101 33.7
Eucgr.E01087 Eucalyptus grandis HOM05D001632 ORTHO05D001534 4.0e-06 55.8 70 38.6
Lalb_Chr12g0210671 Lupinus albus HOM05D001632 ORTHO05D001534 4.0e-06 55.8 70 41.4
Zm00001eb236600 Zea mays HOM05D001632 ORTHO05D001534 4.0e-06 55.8 70 42.9
Zm00001eb265000 Zea mays HOM05D001632 ORTHO05D001534 4.0e-06 55.8 70 41.4
CAN.G518.13 Capsicum annuum HOM05D001632 ORTHO05D001534 5.2e-06 55.5 70 40.0
Gohir.D08G121800 Gossypium hirsutum HOM05D001632 ORTHO05D001534 5.2e-06 55.5 70 40.0
Gorai.004G128400 Gossypium raimondii HOM05D001632 ORTHO05D001534 5.2e-06 55.5 70 40.0
Hma1.2p1_0198F.1_g085310 Hydrangea macrophylla HOM05D001632 ORTHO05D001534 5.2e-06 55.5 72 40.3
Lj1g0022688 Lotus japonicus HOM05D001632 ORTHO05D001534 5.2e-06 55.5 70 42.9
Potri.011G150600 Populus trichocarpa HOM05D001632 ORTHO05D001534 5.2e-06 55.5 104 29.8
VMungo0331G2017 Vigna mungo HOM05D001632 ORTHO05D001534 5.2e-06 55.5 70 42.9
Dinv18773 Davidia involucrata HOM05D001632 ORTHO05D001534 6.8e-06 55.1 70 40.0
Hund27147 Selenicereus undatus HOM05D001632 ORTHO05D001534 6.8e-06 55.1 73 41.1
THA.LOC104813067 Tarenaya hassleriana HOM05D001632 ORTHO05D001534 6.8e-06 55.1 70 42.9
THA.LOC104817399 Tarenaya hassleriana HOM05D001632 ORTHO05D001534 6.8e-06 55.1 70 40.0
TWI59G0644 Tripterygium wilfordii HOM05D001632 ORTHO05D001534 6.8e-06 55.1 73 38.4
Zm00001eb354910 Zea mays HOM05D001632 ORTHO05D001534 6.8e-06 55.1 70 42.9
C04p01140 Brassica napus HOM05D001632 ORTHO05D001534 8.9e-06 54.7 65 43.1
Haze_09209 Corylus avellana HOM05D001632 ORTHO05D001534 8.9e-06 54.7 109 33.9
FAN04G1452 Fragaria x ananassa HOM05D001632 ORTHO05D001534 8.9e-06 54.7 70 40.0
FAN08G0351 Fragaria x ananassa HOM05D001632 ORTHO05D001534 8.9e-06 54.7 70 40.0
FAN13G1144 Fragaria x ananassa HOM05D001632 ORTHO05D001534 8.9e-06 54.7 70 40.0
Rhsim02G0254300 Rhododendron simsii HOM05D001632 ORTHO05D001534 8.9e-06 54.7 70 40.0
RcHm_v2.0_Chr7g0187761 Rosa chinensis HOM05D001632 ORTHO05D001534 8.9e-06 54.7 70 40.0
Sabra16G0304600 Salix brachista HOM05D001632 ORTHO05D001534 8.9e-06 54.7 110 33.6
Sed0025819 Sechium edule HOM05D001632 ORTHO05D001534 8.9e-06 54.7 70 40.0
TWI15G0096 Tripterygium wilfordii HOM05D001632 ORTHO05D001534 8.9e-06 54.7 70 40.0


User provided reference genes

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