Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B02289 Eucalyptus grandis HOM05D004551 ORTHO05D005262 6.5e-36 153.7 86 100.0
RcHm_v2.0_Chr5g0067321 Rosa chinensis HOM05D004551 ORTHO05D005262 1.7e-31 139.0 84 90.5
CiPaw.14G063000 Carya illinoinensis HOM05D004551 ORTHO05D005262 2.2e-31 138.7 86 87.2
MD11G1085200 Malus domestica HOM05D004551 ORTHO05D005262 8.2e-31 136.7 86 84.9
HanXRQChr08g0237601 Helianthus annuus HOM05D004551 ORTHO05D005262 2.4e-30 135.2 86 75.6
HanXRQChr02g0055991 Helianthus annuus HOM05D004551 ORTHO05D005262 3.1e-30 134.8 86 75.6
CSS0004921 Camellia sinensis var. sinensis HOM05D004551 ORTHO05D005262 7.0e-30 133.7 86 80.2
HanXRQChr09g0243371 Helianthus annuus HOM05D004551 ORTHO05D005262 9.1e-30 133.3 86 74.4
HanXRQChr09g0243381 Helianthus annuus HOM05D004551 ORTHO05D005262 9.1e-30 133.3 86 74.4
Prupe.6G065200 Prunus persica HOM05D004551 ORTHO05D005262 1.6e-29 132.5 85 72.9
CiPaw.13G084300 Carya illinoinensis HOM05D004551 ORTHO05D005262 2.0e-29 132.1 86 81.4
Dinv34317 Davidia involucrata HOM05D004551 ORTHO05D005262 2.0e-29 132.1 86 82.6
Hma1.2p1_0543F.1_g175360 Hydrangea macrophylla HOM05D004551 ORTHO05D005262 2.0e-29 132.1 86 80.2
Nn2g13555 Nelumbo nucifera HOM05D004551 ORTHO05D005262 2.6e-29 131.7 84 83.3
Lsat_1_v5_gn_9_25241 Lactuca sativa HOM05D004551 ORTHO05D005262 3.5e-29 131.3 86 73.3
GSVIVG01024832001 Vitis vinifera HOM05D004551 ORTHO05D005262 3.5e-29 131.3 84 82.1
MELO3C020586.2 Cucumis melo HOM05D004551 ORTHO05D005262 5.9e-29 130.6 86 79.1
CsaV3_1G035840 Cucumis sativus L. HOM05D004551 ORTHO05D005262 5.9e-29 130.6 86 79.1
QL01p028907 Quercus lobata HOM05D004551 ORTHO05D005262 1.0e-28 129.8 88 79.5
Actinidia08554 Actinidia chinensis HOM05D004551 ORTHO05D005262 1.3e-28 129.4 85 84.7
MBI05_g10286_MAGBIO Magnolia biondii HOM05D004551 ORTHO05D005262 1.3e-28 129.4 84 72.6
Hma1.2p1_1521F.1_g288710 Hydrangea macrophylla HOM05D004551 ORTHO05D005262 1.7e-28 129.0 84 72.6
ClCG03G001090 Citrullus lanatus HOM05D004551 ORTHO05D005262 2.2e-28 128.6 86 77.9
Sed0000742 Sechium edule HOM05D004551 ORTHO05D005262 2.2e-28 128.6 86 77.9
Oeu017418.1 Olea europaea HOM05D004551 ORTHO05D005262 5.0e-28 127.5 86 68.6
Dinv35533 Davidia involucrata HOM05D004551 ORTHO05D005262 6.5e-28 127.1 84 71.4
Lalb_Chr24g0397121 Lupinus albus HOM05D004551 ORTHO05D005262 1.1e-27 126.3 84 67.9
Lj3g0011983 Lotus japonicus HOM05D004551 ORTHO05D005262 1.9e-27 125.6 79 74.7
FvH4_3g37430 Fragaria vesca HOM05D004551 ORTHO05D005262 2.5e-27 125.2 79 73.4
FAN11G1128 Fragaria x ananassa HOM05D004551 ORTHO05D005262 2.5e-27 125.2 79 73.4
FAN16G1443 Fragaria x ananassa HOM05D004551 ORTHO05D005262 2.5e-27 125.2 79 73.4
FAN25G2220 Fragaria x ananassa HOM05D004551 ORTHO05D005262 2.5e-27 125.2 79 73.4
Ca_01298_v3 Cicer arietinum L. HOM05D004551 ORTHO05D005262 3.2e-27 124.8 86 67.4
FAN16G2867 Fragaria x ananassa HOM05D004551 ORTHO05D005262 3.2e-27 124.8 78 73.1
Lj4g0001727 Lotus japonicus HOM05D004551 ORTHO05D005262 4.2e-27 124.4 79 73.4
Psat5g285840 Pisum sativum HOM05D004551 ORTHO05D005262 5.5e-27 124.0 83 71.1
Oeu036200.1 Olea europaea HOM05D004551 ORTHO05D005262 7.2e-27 123.6 84 69.0
Cc01_g13610 Coffea canephora HOM05D004551 ORTHO05D005262 9.4e-27 123.2 77 85.7
Glyma.02G308400 Glycine max HOM05D004551 ORTHO05D005262 9.4e-27 123.2 84 70.2
CDE02G0008 Ceratophyllum demersum HOM05D004551 ORTHO05D005262 1.2e-26 122.9 86 67.4
CSS0032515 Camellia sinensis var. sinensis HOM05D004551 ORTHO05D005262 1.6e-26 122.5 84 66.7
Glyma.13G339700 Glycine max HOM05D004551 ORTHO05D005262 1.6e-26 122.5 84 70.2
Gohir.A03G047200 Gossypium hirsutum HOM05D004551 ORTHO05D005262 1.6e-26 122.5 85 68.2
Gorai.003G126500 Gossypium raimondii HOM05D004551 ORTHO05D005262 1.6e-26 122.5 85 68.2
CANSAT54G1854 Cannabis sativa HOM05D004551 ORTHO05D005262 3.6e-26 121.3 84 77.4
Phvul.008G288300 Phaseolus vulgaris HOM05D004551 ORTHO05D005262 4.7e-26 120.9 84 66.7
Duzib150G1644 Durio zibethinus HOM05D004551 ORTHO05D005262 6.1e-26 120.6 85 75.3
THA.LOC104800711 Tarenaya hassleriana HOM05D004551 ORTHO05D005262 6.1e-26 120.6 84 64.3
TWI75G0664 Tripterygium wilfordii HOM05D004551 ORTHO05D005262 6.1e-26 120.6 85 63.5
arahy.Tifrunner.gnm1.ann1.S44GTI Arachis hypogaea HOM05D004551 ORTHO05D005262 1.4e-25 119.4 93 62.4
Ciclev10029702m.g Citrus clementina HOM05D004551 ORTHO05D005262 1.4e-25 119.4 84 69.0
SalBow1G6960 Salvia bowleyana HOM05D004551 ORTHO05D005262 1.4e-25 119.4 86 62.8
TPR.G6876 Trifolium pratense HOM05D004551 ORTHO05D005262 1.4e-25 119.4 83 67.5
Duzib168G2386 Durio zibethinus HOM05D004551 ORTHO05D005262 1.8e-25 119.0 85 65.9
Duzib170G1093 Durio zibethinus HOM05D004551 ORTHO05D005262 1.8e-25 119.0 85 75.3
Glyma.15G034700 Glycine max HOM05D004551 ORTHO05D005262 1.8e-25 119.0 84 67.9
Gohir.A05G091300 Gossypium hirsutum HOM05D004551 ORTHO05D005262 1.8e-25 119.0 85 67.1
Gohir.D05G092200 Gossypium hirsutum HOM05D004551 ORTHO05D005262 1.8e-25 119.0 85 67.1
Gorai.009G094700 Gossypium raimondii HOM05D004551 ORTHO05D005262 1.8e-25 119.0 85 67.1
Medtr2g097870 Medicago truncatula HOM05D004551 ORTHO05D005262 1.8e-25 119.0 81 69.1
Thecc.09G309400 Theobroma cacao HOM05D004551 ORTHO05D005262 1.8e-25 119.0 84 66.7
Migut.J00249 Erythranthe guttata HOM05D004551 ORTHO05D005262 3.0e-25 118.2 86 64.0
Aa31LG5G6930 Aethionema arabicum HOM05D004551 ORTHO05D005262 4.0e-25 117.9 84 61.9
CDE04G2361 Ceratophyllum demersum HOM05D004551 ORTHO05D005262 5.2e-25 117.5 76 71.1
Sc12g0001090 Simmondsia chinensis HOM05D004551 ORTHO05D005262 5.2e-25 117.5 84 77.4
Glyma.14G004700 Glycine max HOM05D004551 ORTHO05D005262 6.7e-25 117.1 84 66.7
arahy.Tifrunner.gnm1.ann1.CMV3ZL Arachis hypogaea HOM05D004551 ORTHO05D005262 8.8e-25 116.7 93 60.2
Sp4g12260 Schrenkiella parvula HOM05D004551 ORTHO05D005262 8.8e-25 116.7 86 60.5
AL4G24240 Arabidopsis lyrata HOM05D004551 ORTHO05D005262 3.3e-24 114.8 86 59.3
Thhalv10017490m.g Eutrema salsugineum HOM05D004551 ORTHO05D005262 3.3e-24 114.8 86 60.5
Rhsim04G0164100 Rhododendron simsii HOM05D004551 ORTHO05D005262 3.3e-24 114.8 86 61.6
Atru.chr3.4045 Acer truncatum HOM05D004551 ORTHO05D005262 9.7e-24 113.2 82 74.4
A04p22520 Brassica napus HOM05D004551 ORTHO05D005262 9.7e-24 113.2 86 59.3
Cc06_g01910 Coffea canephora HOM05D004551 ORTHO05D005262 9.7e-24 113.2 84 64.3
Nitab4.5_0002152g0070 Nicotiana tabacum HOM05D004551 ORTHO05D005262 9.7e-24 113.2 76 67.1
AT2G29530 Arabidopsis thaliana HOM05D004551 ORTHO05D005262 1.3e-23 112.8 83 60.2
A05p15870 Brassica napus HOM05D004551 ORTHO05D005262 1.3e-23 112.8 86 59.3
CARHR122870 Cardamine hirsuta HOM05D004551 ORTHO05D005262 1.3e-23 112.8 80 61.2
FAN21G1099 Fragaria x ananassa HOM05D004551 ORTHO05D005262 1.3e-23 112.8 73 72.6
C04p21310 Brassica napus HOM05D004551 ORTHO05D005262 1.7e-23 112.5 84 59.5
COL.COLO4_19068 Corchorus olitorius HOM05D004551 ORTHO05D005262 1.7e-23 112.5 84 63.1
Sopen06g001810 Solanum pennellii HOM05D004551 ORTHO05D005262 1.7e-23 112.5 86 64.0
Solyc06g005840.4 Solanum lycopersicum HOM05D004551 ORTHO05D005262 2.8e-23 111.7 86 64.0
Carub.0004s1058 Capsella rubella HOM05D004551 ORTHO05D005262 3.7e-23 111.3 86 59.3
PSO339G1751 Papaver somniferum HOM05D004551 ORTHO05D005262 3.7e-23 111.3 85 58.8
PSO384G2886 Papaver somniferum HOM05D004551 ORTHO05D005262 3.7e-23 111.3 85 58.8
Sed0006275 Sechium edule HOM05D004551 ORTHO05D005262 3.7e-23 111.3 74 78.4
Hund18875 Selenicereus undatus HOM05D004551 ORTHO05D005262 4.8e-23 110.9 84 61.9
PGSC0003DMG402020339 Solanum tuberosum HOM05D004551 ORTHO05D005262 4.8e-23 110.9 77 66.2
BcaB02g10259 Brassica carinata HOM05D004551 ORTHO05D005262 6.3e-23 110.5 84 58.3
Migut.L01982 Erythranthe guttata HOM05D004551 ORTHO05D005262 6.3e-23 110.5 79 62.0
Peaxi162Scf01302g00041 Petunia axillaris HOM05D004551 ORTHO05D005262 8.3e-23 110.2 76 65.8
Pp3c1_35930 Physcomitrium patens HOM05D004551 ORTHO05D005262 8.3e-23 110.2 77 61.0
Solyc09g011760.3 Solanum lycopersicum HOM05D004551 ORTHO05D005262 8.3e-23 110.2 77 64.9
Sopen09g006580 Solanum pennellii HOM05D004551 ORTHO05D005262 8.3e-23 110.2 77 64.9
PGSC0003DMG400020830 Solanum tuberosum HOM05D004551 ORTHO05D005262 8.3e-23 110.2 84 64.3
unitig_578.g15888 Utricularia gibba HOM05D004551 ORTHO05D005262 8.3e-23 110.2 79 62.0
Zm00001eb211450 Zea mays HOM05D004551 ORTHO05D005262 8.3e-23 110.2 86 62.8
Dinv17073 Davidia involucrata HOM05D004551 ORTHO05D005262 1.4e-22 109.4 74 70.3
Dinv43017 Davidia involucrata HOM05D004551 ORTHO05D005262 1.4e-22 109.4 74 70.3
Potri.009G039600 Populus trichocarpa HOM05D004551 ORTHO05D005262 1.8e-22 109.0 86 59.3
BolC4t27387H Brassica oleracea HOM05D004551 ORTHO05D005262 2.4e-22 108.6 95 53.7
Os03g0825400 Oryza sativa ssp. japonica HOM05D004551 ORTHO05D005262 3.1e-22 108.2 84 69.0
DCAR_005918 Daucus carota HOM05D004551 ORTHO05D005262 4.1e-22 107.8 97 69.1
ECA247G0999 Erigeron canadensis HOM05D004551 ORTHO05D005262 9.1e-22 106.7 81 72.8
C04p58670 Brassica napus HOM05D004551 ORTHO05D005262 1.6e-21 105.9 98 52.0
Potri.001G246500 Populus trichocarpa HOM05D004551 ORTHO05D005262 2.0e-21 105.5 86 57.0
vmacro08615 Vaccinium macrocarpon HOM05D004551 ORTHO05D005262 2.7e-21 105.1 76 63.2
PGR102G3288 Punica granatum HOM05D004551 ORTHO05D005262 5.9e-21 104.0 69 82.6
Aqoxy1G00774 Aquilegia oxysepala HOM05D004551 ORTHO05D005262 1.7e-20 102.4 76 63.2
EL10Ac7g16095 Beta vulgaris HOM05D004551 ORTHO05D005262 1.7e-20 102.4 84 58.3
Glyma.15G229800 Glycine max HOM05D004551 ORTHO05D005262 1.7e-20 102.4 68 70.6
vmacro03012 Vaccinium macrocarpon HOM05D004551 ORTHO05D005262 1.7e-20 102.4 72 65.3
BcaB06g28317 Brassica carinata HOM05D004551 ORTHO05D005262 2.2e-20 102.1 84 64.3
Haze_24227 Corylus avellana HOM05D004551 ORTHO05D005262 3.8e-20 101.3 68 70.6
Nitab4.5_0002405g0130 Nicotiana tabacum HOM05D004551 ORTHO05D005262 3.8e-20 101.3 67 70.1
MD03G1080700 Malus domestica HOM05D004551 ORTHO05D005262 6.5e-20 100.5 63 73.0
Os07g0243100 Oryza sativa ssp. japonica HOM05D004551 ORTHO05D005262 6.5e-20 100.5 76 60.5
Lalb_Chr22g0352421 Lupinus albus HOM05D004551 ORTHO05D005262 8.5e-20 100.1 68 66.2
Manes.01G166600 Manihot esculenta HOM05D004551 ORTHO05D005262 8.5e-20 100.1 86 54.7
Mapoly0052s0053 Marchantia polymorpha HOM05D004551 ORTHO05D005262 1.1e-19 99.8 73 58.9
Ah.15g090420 Amaranthus hybridus HOM05D004551 ORTHO05D005262 2.5e-19 98.6 77 55.8
Manes.02G124000 Manihot esculenta HOM05D004551 ORTHO05D005262 2.5e-19 98.6 86 52.3
AagrBONN_evm.TU.Sc2ySwM_117.3522 Anthoceros agrestis HOM05D004551 ORTHO05D005262 3.2e-19 98.2 76 55.3
BraA04t17797Z Brassica rapa HOM05D004551 ORTHO05D005262 3.2e-19 98.2 115 44.3
unitig_8.g4441 Utricularia gibba HOM05D004551 ORTHO05D005262 7.2e-19 97.1 92 53.3
HPP92_018167 Vanilla planifolia HOM05D004551 ORTHO05D005262 1.2e-18 96.3 67 68.7
CAN.G978.3 Capsicum annuum HOM05D004551 ORTHO05D005262 4.7e-18 94.4 65 66.2
Gohir.D03G120000 Gossypium hirsutum HOM05D004551 ORTHO05D005262 3.0e-17 91.7 85 57.6
MD02G1203300 Malus domestica HOM05D004551 ORTHO05D005262 2.6e-16 88.6 50 86.0
SMO172G0051 Selaginella moellendorffii HOM05D004551 ORTHO05D005262 7.5e-16 87.0 72 56.9
AUR62020055 Chenopodium quinoa HOM05D004551 ORTHO05D005262 1.7e-15 85.9 67 61.2
ECA236G0522 Erigeron canadensis HOM05D004551 ORTHO05D005262 1.7e-15 85.9 59 66.1
BraA05t20500Z Brassica rapa HOM05D004551 ORTHO05D005262 2.2e-15 85.5 87 49.4
Sabra16G0149600 Salix brachista HOM05D004551 ORTHO05D005262 2.2e-15 85.5 70 57.1
Phvul.L008843 Phaseolus vulgaris HOM05D004551 ORTHO05D005262 6.3e-15 84.0 84 56.0
QL02p091823 Quercus lobata HOM05D000741 ORTHO05D000506 1.8e-14 82.4 53 69.8
QL02p079044 Quercus lobata HOM05D004551 ORTHO05D005262 2.4e-14 82.0 52 71.2
Oeu030799.1 Olea europaea HOM05D004551 ORTHO05D005262 4.1e-14 81.3 52 71.2
Nitab4.5_0000880g0120 Nicotiana tabacum HOM05D004551 ORTHO05D005262 7.0e-14 80.5 55 65.5
VMungo0647G0519 Vigna mungo HOM05D000879 ORTHO05D002864 1.6e-13 79.3 54 63.0
Ah.13g070320 Amaranthus hybridus HOM05D004551 ORTHO05D005262 5.9e-13 77.4 60 60.0
MCO07G332 Micromonas commoda HOM05D004551 ORTHO05D005262 7.7e-13 77.0 69 43.5
HPP92_018179 Vanilla planifolia HOM05D004551 ORTHO05D005262 7.7e-13 77.0 41 85.4
Zm00001eb063090 Zea mays HOM05D004551 ORTHO05D005262 7.7e-13 77.0 86 51.2
CBR_g3168 Chara braunii HOM05D004551 ORTHO05D005262 1.0e-12 76.6 71 43.7
SGA_v2.0_scaffold75G24985 Striga asiatica HOM05D001002 ORTHO05D000802 1.1e-11 73.2 47 66.0
Rhsim13G0075400 Rhododendron simsii HOM05D004551 ORTHO05D005262 1.5e-11 72.8 72 52.8
EL10Ac7g17098 Beta vulgaris HOM05D004551 ORTHO05D005262 3.3e-11 71.6 97 41.2
BolC4t23660H Brassica oleracea HOM05D004551 ORTHO05D005262 1.2e-10 69.7 54 53.7
AUR62001717 Chenopodium quinoa HOM05D004551 ORTHO05D005262 3.6e-10 68.2 100 41.0
Cre12.g514900 Chlamydomonas reinhardtii HOM05D004551 ORTHO05D005262 2.3e-09 65.5 80 37.5
DCAR_007410 Daucus carota HOM05D004551 ORTHO05D005262 3.0e-09 65.1 72 48.6
PRCOL_00001542 Prasinoderma coloniale HOM05D002457 ORTHO05D005262 1.5e-08 62.8 59 57.6
MELO3C035440.2 Cucumis melo HOM05D004551 ORTHO05D005262 4.9e-07 57.8 116 37.1
SHI22087 Sapria himalayana HOM05D004551 ORTHO05D005262 4.1e-06 54.7 45 53.3
SEGI_01909 Sequoiadendron giganteum HOM05D004551 ORTHO05D005262 4.1e-06 54.7 31 80.6
TPR.G13621 Trifolium pratense HOM05D004551 ORTHO05D005262 7.0e-06 53.9 59 49.2


User provided reference genes

Program Settings