Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B02283 Eucalyptus grandis HOM05D005457 ORTHO05D006350 0.0e+00 1882.5 1057 100.0
QL01p028955 Quercus lobata HOM05D005457 ORTHO05D006350 5.1e-106 390.2 1126 39.8
Atru.chr3.4038 Acer truncatum HOM05D005457 ORTHO05D006350 9.9e-102 375.9 1066 35.7
Dinv34321 Davidia involucrata HOM05D005457 ORTHO05D006350 6.6e-98 363.2 1198 34.9
Haze_24232 Corylus avellana HOM05D005457 ORTHO05D006350 8.1e-96 356.3 1211 35.8
Ciclev10027683m.g Citrus clementina HOM05D005457 ORTHO05D006350 5.4e-92 343.6 1187 35.6
Prupe.6G064800 Prunus persica HOM05D005457 ORTHO05D006350 1.3e-88 332.4 1148 34.0
CiPaw.13G084000 Carya illinoinensis HOM05D005457 ORTHO05D006350 1.2e-86 325.9 1128 34.6
Manes.02G123500 Manihot esculenta HOM05D005457 ORTHO05D006350 1.1e-84 319.3 1118 32.6
Hma1.2p1_0543F.1_g175290 Hydrangea macrophylla HOM05D005457 ORTHO05D006350 4.2e-84 317.4 1229 32.5
MD03G1079900 Malus domestica HOM05D005457 ORTHO05D006350 3.7e-80 304.3 1102 34.8
MD11G1084500 Malus domestica HOM05D005457 ORTHO05D006350 4.8e-80 303.9 1101 33.7
ClCG03G001030 Citrullus lanatus HOM05D005457 ORTHO05D006350 2.9e-77 294.7 1185 31.9
GSVIVG01024823001 Vitis vinifera HOM05D005457 ORTHO05D006350 4.2e-76 290.8 1299 30.6
CsaV3_1G035890 Cucumis sativus L. HOM05D005457 ORTHO05D006350 7.2e-76 290.0 1124 32.6
Dinv17076 Davidia involucrata HOM05D005457 ORTHO05D006350 8.7e-74 283.1 1230 32.7
Dinv43020 Davidia involucrata HOM05D005457 ORTHO05D006350 8.7e-74 283.1 1230 32.7
Dinv43077 Davidia involucrata HOM05D005457 ORTHO05D006350 8.7e-74 283.1 1230 32.7
Thecc.09G309000 Theobroma cacao HOM05D005457 ORTHO05D006350 8.7e-74 283.1 1110 34.9
MELO3C020581.2 Cucumis melo HOM05D005457 ORTHO05D006350 2.5e-73 281.6 1124 32.3
Gohir.D03G119400 Gossypium hirsutum HOM05D005457 ORTHO05D006350 5.7e-73 280.4 1054 32.4
Gorai.003G125900 Gossypium raimondii HOM05D005457 ORTHO05D006350 1.4e-71 275.8 1122 32.0
Potri.009G040500 Populus trichocarpa HOM05D005457 ORTHO05D006350 9.0e-71 273.1 1141 32.4
Gohir.D03G119500 Gossypium hirsutum HOM05D005457 ORTHO05D006350 4.5e-70 270.8 1125 29.7
Rhsim13G0075000 Rhododendron simsii HOM05D005457 ORTHO05D006350 1.7e-69 268.9 1086 33.6
Gorai.003G125700 Gossypium raimondii HOM05D005457 ORTHO05D006350 1.9e-68 265.4 1137 31.2
Potri.001G247100 Populus trichocarpa HOM05D005457 ORTHO05D006350 1.5e-65 255.8 1142 33.3
Gohir.A03G047600 Gossypium hirsutum HOM05D005457 ORTHO05D006350 2.0e-65 255.4 1116 34.2
Lj1C143T9 Lonicera japonica HOM05D005457 ORTHO05D006350 2.0e-65 255.4 1118 31.1
CSS0006949 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 2.5e-65 255.0 1054 31.1
Lj2A1073T53 Lonicera japonica HOM05D005457 ORTHO05D006350 7.4e-65 253.4 1170 32.6
CSS0035455 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 9.7e-65 253.1 1194 31.2
TAR369G0749 Trochodendron aralioides HOM05D005457 ORTHO05D006350 1.3e-64 252.7 689 39.2
FvH4_3g37470 Fragaria vesca HOM05D005457 ORTHO05D006350 2.8e-64 251.5 1086 29.8
Gohir.A03G047700 Gossypium hirsutum HOM05D005457 ORTHO05D006350 3.4e-62 244.6 905 32.2
FAN11G1716 Fragaria x ananassa HOM05D005457 ORTHO05D006350 1.3e-61 242.7 1069 29.5
RcHm_v2.0_Chr5g0067361 Rosa chinensis HOM05D005457 ORTHO05D006350 5.0e-61 240.7 418 45.0
Sed0019872 Sechium edule HOM05D005457 ORTHO05D006350 1.9e-60 238.8 1139 29.5
FAN25G1264 Fragaria x ananassa HOM05D005457 ORTHO05D006350 7.2e-60 236.9 1106 29.5
Glyma.12G007800 Glycine max HOM05D005457 ORTHO05D006350 3.0e-58 231.5 1067 32.5
Sabra09G0028400 Salix brachista HOM05D005457 ORTHO05D006350 2.0e-57 228.8 1119 31.4
FAN16G3594 Fragaria x ananassa HOM05D005457 ORTHO05D006350 1.6e-54 219.2 1106 27.8
Phvul.011G009900 Phaseolus vulgaris HOM05D005457 ORTHO05D006350 2.0e-54 218.8 1121 31.3
FAN21G0431 Fragaria x ananassa HOM05D005457 ORTHO05D006350 1.3e-53 216.1 1113 28.8
arahy.Tifrunner.gnm1.ann1.L17SH6 Arachis hypogaea HOM05D005457 ORTHO05D006350 3.8e-53 214.5 1070 33.0
Sopen09g014590 Solanum pennellii HOM05D005457 ORTHO05D006350 3.8e-53 214.5 1150 28.7
Lj3g0007084 Lotus japonicus HOM05D005457 ORTHO05D006350 1.5e-52 212.6 855 33.7
Nn2g13569 Nelumbo nucifera HOM05D005457 ORTHO05D006350 2.5e-52 211.8 1301 30.6
Solyc09g031650.3 Solanum lycopersicum HOM05D005457 ORTHO05D006350 6.1e-51 207.2 1119 28.3
PGSC0003DMG400006701 Solanum tuberosum HOM05D005457 ORTHO05D006350 8.0e-51 206.8 1148 32.5
vmacro03007 Vaccinium macrocarpon HOM05D005457 ORTHO05D006350 4.0e-50 204.5 1054 32.4
Medtr4g037575 Medicago truncatula HOM05D005457 ORTHO05D006350 4.4e-49 201.1 417 43.6
Peaxi162Scf00433g00116 Petunia axillaris HOM05D005457 ORTHO05D006350 7.5e-49 200.3 1131 29.3
Actinidia25123 Actinidia chinensis HOM05D005457 ORTHO05D006350 2.8e-48 198.4 965 31.0
VMungo1127G1417 Vigna mungo HOM05D005457 ORTHO05D006350 1.4e-47 196.1 1088 31.9
Glyma.09G228800 Glycine max HOM05D005457 ORTHO05D006350 5.3e-47 194.1 857 31.6
arahy.Tifrunner.gnm1.ann1.U9UY67 Arachis hypogaea HOM05D005457 ORTHO05D006350 9.1e-47 193.4 1062 32.2
Lalb_Chr01g0000381 Lupinus albus HOM05D005457 ORTHO05D006350 5.9e-46 190.7 1104 28.1
Psat7g154880 Pisum sativum HOM05D005457 ORTHO05D006350 1.5e-44 186.0 569 38.3
TPR.G3642 Trifolium pratense HOM05D005457 ORTHO05D006350 2.5e-44 185.3 417 42.7
MBI14_g32923_MAGBIO Magnolia biondii HOM05D005457 ORTHO05D006350 4.2e-44 184.5 626 33.9
Cc00_g21960 Coffea canephora HOM05D005457 ORTHO05D006350 8.0e-43 180.3 1182 28.2
CAN.G1002.16 Capsicum annuum HOM05D005457 ORTHO05D006350 1.8e-42 179.1 1099 27.0
Ca_19579_v3 Cicer arietinum L. HOM05D005457 ORTHO05D006350 3.4e-41 174.9 653 34.9
Sc12g0001060 Simmondsia chinensis HOM05D005457 ORTHO05D006350 3.4e-41 174.9 1136 30.7
SHI05894 Sapria himalayana HOM05D005457 ORTHO05D006350 9.8e-41 173.3 1092 28.7
ATR0618G328 Amborella trichopoda HOM05D005457 ORTHO05D006350 1.3e-40 172.9 617 33.7
AUR62020069 Chenopodium quinoa HOM05D005457 ORTHO05D006350 1.1e-39 169.9 749 29.1
Nn2g11331 Nelumbo nucifera HOM05D005457 ORTHO05D006350 1.8e-39 169.1 1284 30.5
AUR62001711 Chenopodium quinoa HOM05D005457 ORTHO05D006350 1.2e-38 166.4 916 27.6
EL10Ac7g16099 Beta vulgaris HOM05D005457 ORTHO05D006350 2.0e-38 165.6 1078 26.7
TAR623G1322 Trochodendron aralioides HOM05D005457 ORTHO05D006350 5.0e-37 161.0 421 42.5
HanXRQChr08g0237081 Helianthus annuus HOM05D005457 ORTHO05D006350 6.5e-37 160.6 568 30.3
COL.COLO4_19073 Corchorus olitorius HOM05D005457 ORTHO05D006350 1.1e-36 159.8 1020 31.3
Cpa.g.sc112.91 Carica papaya HOM05D005457 ORTHO05D006350 2.3e-34 152.1 112 67.9
PSO170G6745 Papaver somniferum HOM05D005457 ORTHO05D006350 5.2e-34 151.0 378 36.2
ECA247G2917 Erigeron canadensis HOM05D005457 ORTHO05D006350 1.2e-33 149.8 1081 26.8
PSO782G3368 Papaver somniferum HOM05D005457 ORTHO05D006350 3.7e-32 144.8 640 28.9
Hund11609 Selenicereus undatus HOM05D005457 ORTHO05D006350 4.9e-32 144.4 1134 29.7
SalBow2G3533 Salvia bowleyana HOM05D005457 ORTHO05D006350 2.0e-30 139.0 322 40.1
Actinidia08557 Actinidia chinensis HOM05D005457 ORTHO05D006350 2.7e-30 138.7 723 27.4
DCAR_027735 Daucus carota HOM05D005457 ORTHO05D006350 5.0e-29 134.4 391 36.8
Migut.N00905 Erythranthe guttata HOM05D005457 ORTHO05D006350 1.1e-28 133.3 464 29.1
Lsat_1_v5_gn_9_25441 Lactuca sativa HOM05D005457 ORTHO05D006350 1.9e-28 132.5 118 55.9
Aqoxy1G00759 Aquilegia oxysepala HOM05D005457 ORTHO05D006350 9.5e-28 130.2 1146 27.3
CDE09G0768 Ceratophyllum demersum HOM05D005457 ORTHO05D006350 3.4e-25 121.7 118 54.2
Ah.14g082630 Amaranthus hybridus HOM05D005457 ORTHO05D006350 7.5e-25 120.6 1103 27.3
Oeu017421.1 Olea europaea HOM05D005457 ORTHO05D006350 6.4e-24 117.5 532 28.4
CSS0049881 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 2.4e-23 115.5 750 29.5
Cpa.g.sc112.90 Carica papaya HOM05D005457 ORTHO05D006350 7.0e-23 114.0 516 28.5
THA.LOC104799410 Tarenaya hassleriana HOM05D005457 ORTHO05D006350 7.0e-23 114.0 114 54.4
DCAR_027739 Daucus carota HOM05D005457 ORTHO05D006350 4.3e-20 104.8 248 36.3
DCAR_027737 Daucus carota HOM05D005457 ORTHO05D006350 2.8e-19 102.1 242 36.0
CDE02G3816 Ceratophyllum demersum HOM05D034644 ORTHO05D006350 8.0e-19 100.5 86 57.0
HPP92_001490 Vanilla planifolia HOM05D005457 ORTHO05D006350 5.2e-18 97.8 109 47.7
SGA_v2.0_scaffold199G41161 Striga asiatica HOM05D005457 ORTHO05D006350 6.4e-16 90.9 1120 25.3
Manes.01G166000 Manihot esculenta HOM05D005457 ORTHO05D006350 7.8e-14 84.0 498 28.5
Duzib170G0589 Durio zibethinus HOM05D005457 ORTHO05D006350 1.7e-13 82.8 321 29.6
unitig_27.g24810 Utricularia gibba HOM05D005457 ORTHO05D006350 4.3e-12 78.2 54 63.0
TAR623G0390 Trochodendron aralioides HOM05D005457 ORTHO05D006350 1.6e-11 76.3 589 25.3
Zm00001eb358910 Zea mays HOM05D005457 ORTHO05D006350 2.2e-08 65.9 98 36.7
Prupe.6G064700 Prunus persica HOM05D005457 ORTHO05D006350 3.7e-08 65.1 489 28.0
RcHm_v2.0_Chr5g0067371 Rosa chinensis HOM05D005457 ORTHO05D006350 5.4e-07 61.2 583 25.7
Os12g0155300 Oryza sativa ssp. japonica HOM05D005457 ORTHO05D006350 2.7e-06 58.9 91 34.1
Zm00001eb159160 Zea mays HOM05D005457 ORTHO05D006350 2.7e-06 58.9 43 60.5
Nitab4.5_0006476g0010 Nicotiana tabacum HOM05D005457 ORTHO05D006350 7.8e-06 57.4 676 26.3


User provided reference genes

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