Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B02253 Eucalyptus grandis HOM05D005476 ORTHO05D006886 9.9e-211 736.5 363 100.0
Cfa011695 Carpinus fangiana HOM05D005476 ORTHO05D006886 1.8e-132 476.5 355 66.5
Haze_24322 Corylus avellana HOM05D005476 ORTHO05D006886 1.7e-130 469.9 335 68.1
Prupe.6G057500 Prunus persica HOM05D005476 ORTHO05D006886 1.5e-129 466.8 356 64.3
CiPaw.14G059600 Carya illinoinensis HOM05D005476 ORTHO05D006886 2.5e-129 466.1 364 64.8
CiPaw.13G077600 Carya illinoinensis HOM05D005476 ORTHO05D006886 2.3e-127 459.5 341 65.1
Dinv14437 Davidia involucrata HOM05D005476 ORTHO05D006886 6.8e-127 458.0 355 64.2
Manes.01G161600 Manihot esculenta HOM05D005476 ORTHO05D006886 1.5e-126 456.8 342 66.1
RcHm_v2.0_Chr5g0069451 Rosa chinensis HOM05D005476 ORTHO05D006886 5.8e-126 454.9 356 63.2
Potri.009G046200 Populus trichocarpa HOM05D005476 ORTHO05D006886 1.7e-125 453.4 335 67.2
Ciclev10028681m.g Citrus clementina HOM05D005476 ORTHO05D006886 1.9e-124 449.9 329 66.0
CANSAT25G3760 Cannabis sativa HOM05D005476 ORTHO05D006886 2.4e-124 449.5 364 62.1
Cpa.g.sc415.4 Carica papaya HOM05D005476 ORTHO05D006886 2.4e-124 449.5 357 63.6
TWI31G0160 Tripterygium wilfordii HOM05D005476 ORTHO05D006886 3.2e-124 449.1 349 64.2
Dinv28640 Davidia involucrata HOM05D005476 ORTHO05D006886 4.1e-124 448.7 347 64.6
FvH4_3g38550 Fragaria vesca HOM05D005476 ORTHO05D006886 7.0e-124 448.0 344 64.5
FAN11G1091 Fragaria x ananassa HOM05D005476 ORTHO05D006886 7.0e-124 448.0 344 64.5
Atru.chr3.4220 Acer truncatum HOM05D005476 ORTHO05D006886 1.6e-123 446.8 342 65.8
FAN16G3667 Fragaria x ananassa HOM05D005476 ORTHO05D006886 3.5e-123 445.7 342 64.0
MD11G1074700 Malus domestica HOM05D005476 ORTHO05D006886 3.5e-123 445.7 356 62.4
Manes.02G119400 Manihot esculenta HOM05D005476 ORTHO05D006886 4.6e-123 445.3 334 66.2
Duzib168G1303 Durio zibethinus HOM05D005476 ORTHO05D006886 1.0e-122 444.1 330 65.2
Duzib170G1024 Durio zibethinus HOM05D005476 ORTHO05D006886 1.3e-122 443.7 347 63.1
QL01p038276 Quercus lobata HOM05D005476 ORTHO05D006886 1.7e-122 443.4 357 64.4
Gorai.006G106700 Gossypium raimondii HOM05D005476 ORTHO05D006886 3.0e-122 442.6 346 65.3
FAN21G0574 Fragaria x ananassa HOM05D005476 ORTHO05D006886 5.0e-122 441.8 344 64.0
Thecc.09G301800 Theobroma cacao HOM05D005476 ORTHO05D006886 5.0e-122 441.8 329 65.0
MD03G1070700 Malus domestica HOM05D005476 ORTHO05D006886 8.6e-122 441.0 349 63.0
TWI79G0899 Tripterygium wilfordii HOM05D005476 ORTHO05D006886 4.3e-121 438.7 325 67.7
Potri.001G251500 Populus trichocarpa HOM05D005476 ORTHO05D006886 7.3e-121 438.0 320 66.9
PGSC0003DMG400030356 Solanum tuberosum HOM05D005476 ORTHO05D006886 9.5e-121 437.6 352 62.8
CSS0028478 Camellia sinensis var. sinensis HOM05D005476 ORTHO05D006886 3.6e-120 435.6 334 65.3
CSS0011477 Camellia sinensis var. sinensis HOM05D005476 ORTHO05D006886 6.2e-120 434.9 336 65.5
Nitab4.5_0001806g0030 Nicotiana tabacum HOM05D005476 ORTHO05D006886 8.1e-120 434.5 341 63.3
FAN25G3001 Fragaria x ananassa HOM05D005476 ORTHO05D006886 1.4e-119 433.7 370 60.0
COL.COLO4_19157 Corchorus olitorius HOM05D005476 ORTHO05D006886 2.3e-119 433.0 347 62.8
DCAR_007375 Daucus carota HOM05D005476 ORTHO05D006886 2.3e-119 433.0 333 64.0
Sabra09G0033300 Salix brachista HOM05D005476 ORTHO05D006886 2.3e-119 433.0 347 62.8
Solyc06g076950.3 Solanum lycopersicum HOM05D005476 ORTHO05D006886 2.3e-119 433.0 355 61.1
Sopen06g033350 Solanum pennellii HOM05D005476 ORTHO05D006886 4.0e-119 432.2 352 61.9
Nitab4.5_0000010g0290 Nicotiana tabacum HOM05D005476 ORTHO05D006886 2.6e-118 429.5 341 62.2
GSVIVG01024740001 Vitis vinifera HOM05D005476 ORTHO05D006886 3.4e-118 429.1 347 62.8
CAN.G394.127 Capsicum annuum HOM05D005476 ORTHO05D006886 9.9e-118 427.6 333 64.3
TAR633G0563 Trochodendron aralioides HOM05D005476 ORTHO05D006886 3.7e-117 425.6 331 63.1
TAR636G1181 Trochodendron aralioides HOM05D005476 ORTHO05D006886 3.7e-117 425.6 314 64.6
Aqoxy2G00901 Aquilegia oxysepala HOM05D005476 ORTHO05D006886 9.2e-116 421.0 316 64.2
Aa31LG11G490 Aethionema arabicum HOM05D005476 ORTHO05D006886 2.1e-115 419.9 329 63.2
Peaxi162Scf00540g00426 Petunia axillaris HOM05D005476 ORTHO05D006886 3.5e-115 419.1 345 61.2
SGA_v2.0_scaffold146G36140 Striga asiatica HOM05D005476 ORTHO05D006886 3.5e-115 419.1 350 60.3
Nn2g13708 Nelumbo nucifera HOM05D005476 ORTHO05D006886 6.0e-115 418.3 325 62.8
PGR102G2402 Punica granatum HOM05D005476 ORTHO05D006886 7.8e-115 417.9 291 70.4
ClCG03G000760 Citrullus lanatus HOM05D005476 ORTHO05D006886 1.3e-114 417.2 345 60.0
THA.LOC104810712 Tarenaya hassleriana HOM05D005476 ORTHO05D006886 8.6e-114 414.5 349 60.5
AT5G58730 Arabidopsis thaliana HOM05D005476 ORTHO05D006886 1.9e-113 413.3 328 61.6
Thhalv10014005m.g Eutrema salsugineum HOM05D005476 ORTHO05D006886 4.3e-113 412.1 321 62.9
Sed0016907 Sechium edule HOM05D005476 ORTHO05D006886 4.3e-113 412.1 345 59.1
C09p50810 Brassica napus HOM05D005476 ORTHO05D006886 5.6e-113 411.8 330 62.4
Cc01_g14180 Coffea canephora HOM05D005476 ORTHO05D006886 5.6e-113 411.8 317 63.4
AL8G35010 Arabidopsis lyrata HOM05D005476 ORTHO05D006886 7.3e-113 411.4 344 59.9
A10p15540 Brassica napus HOM05D005476 ORTHO05D006886 1.2e-112 410.6 333 61.9
Hund18848 Selenicereus undatus HOM05D005476 ORTHO05D006886 2.1e-112 409.8 338 60.7
MELO3C020550.2 Cucumis melo HOM05D005476 ORTHO05D006886 2.8e-112 409.5 344 59.6
SGA_v2.0_scaffold120G32912 Striga asiatica HOM05D005476 ORTHO05D006886 4.7e-112 408.7 321 62.3
BolC9t57941H Brassica oleracea HOM05D005476 ORTHO05D006886 8.1e-112 407.9 330 61.8
BraA10t43679Z Brassica rapa HOM05D005476 ORTHO05D006886 1.1e-111 407.5 332 62.0
ECA247G2000 Erigeron canadensis HOM05D005476 ORTHO05D006886 1.2e-110 404.1 330 60.9
Ah.08g221180 Amaranthus hybridus HOM05D005476 ORTHO05D006886 2.0e-110 403.3 337 58.5
Carub.0008s1935 Capsella rubella HOM05D005476 ORTHO05D006886 2.6e-110 402.9 326 60.4
Lsat_1_v5_gn_9_20101 Lactuca sativa HOM05D005476 ORTHO05D006886 2.6e-110 402.9 322 64.0
AUR62020130 Chenopodium quinoa HOM05D005476 ORTHO05D006886 4.4e-110 402.1 342 58.2
CARHR272640 Cardamine hirsuta HOM05D005476 ORTHO05D006886 5.8e-110 401.7 334 59.6
AUR62001646 Chenopodium quinoa HOM05D005476 ORTHO05D006886 5.8e-110 401.7 342 58.5
Sp6g20420 Schrenkiella parvula HOM05D005476 ORTHO05D006886 7.6e-110 401.4 323 61.9
Sed0014418 Sechium edule HOM05D005476 ORTHO05D006886 1.3e-109 400.6 333 59.8
HanXRQChr04g0109161 Helianthus annuus HOM05D005476 ORTHO05D006886 2.2e-109 399.8 325 62.2
Gohir.A09G090300 Gossypium hirsutum HOM05D005476 ORTHO05D006886 2.4e-108 396.4 284 69.0
BcaC04g19834 Brassica carinata HOM05D005476 ORTHO05D006886 5.4e-108 395.2 330 60.9
SalBow2G2575 Salvia bowleyana HOM05D005476 ORTHO05D006886 5.4e-108 395.2 350 56.6
Migut.N00789 Erythranthe guttata HOM05D005476 ORTHO05D006886 1.6e-107 393.7 359 58.2
Gohir.D09G090400 Gossypium hirsutum HOM05D005476 ORTHO05D006886 1.6e-107 393.7 284 68.7
EL10Ac7g16167 Beta vulgaris HOM05D005476 ORTHO05D006886 1.0e-106 391.0 330 59.4
Glyma.14G193500 Glycine max HOM05D005476 ORTHO05D006886 1.0e-106 391.0 364 55.5
LjContig00155g0002690 Lotus japonicus HOM05D005476 ORTHO05D006886 1.7e-106 390.2 344 56.7
Lalb_Chr17g0345081 Lupinus albus HOM05D005476 ORTHO05D006886 3.0e-106 389.4 317 61.5
unitig_8.g3687 Utricularia gibba HOM05D005476 ORTHO05D006886 3.9e-106 389.0 346 55.5
Nn2g11493 Nelumbo nucifera HOM05D005476 ORTHO05D006886 8.7e-106 387.9 287 65.9
vmacro02961 Vaccinium macrocarpon HOM05D005476 ORTHO05D006886 1.1e-105 387.5 415 49.9
Glyma.02G226600 Glycine max HOM05D005476 ORTHO05D006886 3.3e-105 386.0 363 55.6
Rhsim13G0069500 Rhododendron simsii HOM05D005476 ORTHO05D006886 5.6e-105 385.2 369 55.6
SalBow5G1841 Salvia bowleyana HOM05D005476 ORTHO05D006886 7.3e-105 384.8 334 58.1
Sc06g0008450 Simmondsia chinensis HOM05D005476 ORTHO05D006886 2.8e-104 382.9 347 58.8
TPR.G5779 Trifolium pratense HOM05D005476 ORTHO05D006886 8.1e-104 381.3 333 56.5
PSO801G0319 Papaver somniferum HOM05D005476 ORTHO05D006886 9.0e-103 377.9 302 60.6
unitig_22.g5210 Utricularia gibba HOM05D005476 ORTHO05D006886 9.0e-103 377.9 348 55.7
PSO339G1712 Papaver somniferum HOM05D005476 ORTHO05D006886 2.0e-102 376.7 302 60.3
Psat2g058600 Pisum sativum HOM05D005476 ORTHO05D006886 3.4e-102 375.9 362 54.1
arahy.Tifrunner.gnm1.ann1.Q06W8H Arachis hypogaea HOM05D005476 ORTHO05D006886 4.4e-102 375.6 375 52.8
Medtr5g070350 Medicago truncatula HOM05D005476 ORTHO05D006886 1.3e-101 374.0 334 57.2
MBI14_g42907_MAGBIO Magnolia biondii HOM05D005476 ORTHO05D006886 8.4e-101 371.3 351 54.7
Ca_05598_v3 Cicer arietinum L. HOM05D005476 ORTHO05D006886 2.4e-100 369.8 337 58.2
CsaV3_1G036180 Cucumis sativus L. HOM05D005476 ORTHO05D006886 4.2e-100 369.0 290 62.8
Phvul.008G261400 Phaseolus vulgaris HOM05D005476 ORTHO05D006886 4.2e-100 369.0 324 57.4
SHI19142 Sapria himalayana HOM05D005476 ORTHO05D006886 6.0e-99 365.2 317 58.4
CDE04G1962 Ceratophyllum demersum HOM05D005476 ORTHO05D006886 2.9e-93 346.3 296 56.4
SalBow8G4850 Salvia bowleyana HOM05D005476 ORTHO05D006886 3.2e-92 342.8 340 53.5
VMungo0647G0678 Vigna mungo HOM05D005476 ORTHO05D006886 5.4e-92 342.0 281 61.2
ATR0618G050 Amborella trichopoda HOM05D005476 ORTHO05D006886 2.3e-90 336.7 325 52.3
HPP92_002247 Vanilla planifolia HOM05D005476 ORTHO05D006886 3.9e-90 335.9 318 53.8
Oeu013433.3 Olea europaea HOM05D005476 ORTHO05D006886 2.5e-89 333.2 273 60.4
Lj1A137G45 Lonicera japonica HOM05D005476 ORTHO05D006886 9.6e-89 331.3 335 53.4
Os03g0737701 Oryza sativa ssp. japonica HOM05D005476 ORTHO05D006886 2.7e-83 313.2 324 51.5
Zm00001eb056490 Zea mays HOM05D005476 ORTHO05D006886 4.5e-78 295.8 289 53.3
CDE02G0680 Ceratophyllum demersum HOM05D005476 ORTHO05D006886 1.4e-76 290.8 292 50.0
Oeu000377.2 Olea europaea HOM05D005476 ORTHO05D006886 2.5e-73 280.0 263 56.3
AL1010U10010 Arabidopsis lyrata HOM05D005476 ORTHO05D006886 3.2e-68 263.1 203 64.5
SEGI_26423 Sequoiadendron giganteum HOM05D005476 ORTHO05D006886 3.2e-68 263.1 317 47.0
Mapoly0060s0007 Marchantia polymorpha HOM05D005476 ORTHO05D006886 1.1e-65 254.6 283 48.1
Pp3c1_3930 Physcomitrium patens HOM05D005476 ORTHO05D006886 2.4e-63 246.9 280 45.4
Pp3c7_18020 Physcomitrium patens HOM05D005476 ORTHO05D006886 1.1e-60 238.0 298 43.6
AagrBONN_evm.TU.Sc2ySwM_362.363 Anthoceros agrestis HOM05D005476 ORTHO05D006886 1.2e-59 234.6 282 46.8
SMO329G0019 Selaginella moellendorffii HOM05D005476 ORTHO05D006886 1.2e-59 234.6 270 44.8
arahy.Tifrunner.gnm1.ann1.70CJD0 Arachis hypogaea HOM05D005476 ORTHO05D006886 4.7e-59 232.6 217 53.5
Gohir.D05G089750 Gossypium hirsutum HOM05D005476 ORTHO05D006886 2.2e-53 213.8 163 65.0
CBR_g23861 Chara braunii HOM05D005476 ORTHO05D006886 2.9e-53 213.4 290 41.7
A03p12050 Brassica napus HOM05D005476 ORTHO05D006886 6.3e-48 195.7 176 58.5
RcHm_v2.0_Chr6g0276161 Rosa chinensis HOM05D005476 ORTHO05D006886 8.5e-37 158.7 130 60.0
RcHm_v2.0_Chr7g0201761 Rosa chinensis HOM05D005476 ORTHO05D006886 3.0e-34 150.2 130 58.5
HanXRQChr16g0507541 Helianthus annuus HOM05D005476 ORTHO05D006886 1.7e-29 134.4 86 68.6
BraA03t10517Z Brassica rapa HOM05D005476 ORTHO05D006886 1.7e-24 117.9 106 58.5
C03p15890 Brassica napus HOM05D000062 ORTHO05D021669 3.3e-20 103.6 122 50.0
BolC3t14020H Brassica oleracea HOM05D000062 ORTHO05D006886 3.3e-20 103.6 122 50.0
RcHm_v2.0_Chr7g0242751 Rosa chinensis HOM05D005476 ORTHO05D006886 5.6e-20 102.8 82 63.4
SalBow8G2493 Salvia bowleyana HOM05D005476 ORTHO05D006886 5.6e-20 102.8 171 40.4
Actinidia23243 Actinidia chinensis HOM05D005476 ORTHO05D006886 4.0e-18 96.7 77 62.3
arahy.Tifrunner.gnm1.ann1.Y3WSKM Arachis hypogaea HOM05D005476 ORTHO05D006886 2.9e-16 90.5 103 47.6
SalBow5G5594 Salvia bowleyana HOM05D005476 ORTHO05D006886 8.0e-11 72.4 71 52.1
Pp3c11_9540 Physcomitrium patens HOM05D005476 ORTHO05D006886 6.8e-10 69.3 101 35.6
SMO307G0055 Selaginella moellendorffii HOM05D000559 ORTHO05D000596 6.4e-08 62.8 321 24.3
RcHm_v2.0_Chr6g0303391 Rosa chinensis HOM05D005476 ORTHO05D006886 1.1e-07 62.0 48 58.3
Mapoly0043s0096 Marchantia polymorpha HOM05D000559 ORTHO05D000596 1.4e-07 61.6 126 31.0
ATR0691G298 Amborella trichopoda HOM05D000559 ORTHO05D000596 2.4e-07 60.8 143 29.4
MBI03_g28849_MAGBIO Magnolia biondii HOM05D000559 ORTHO05D000596 1.2e-06 58.5 138 31.9
FAN23G1598 Fragaria x ananassa HOM05D000559 ORTHO05D000596 2.7e-06 57.4 137 29.9
TAR376G0336 Trochodendron aralioides HOM05D000559 ORTHO05D000596 4.6e-06 56.6 126 27.0
Ah.13g067800 Amaranthus hybridus HOM05D000559 ORTHO05D000596 7.8e-06 55.8 127 28.3
COL.COLO4_14227 Corchorus olitorius HOM05D000559 ORTHO05D000596 7.8e-06 55.8 146 28.1
SEGI_35827 Sequoiadendron giganteum HOM05D000559 ORTHO05D000596 7.8e-06 55.8 127 26.8


User provided reference genes

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