Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B02227 Eucalyptus grandis HOM05D006395 ORTHO05D007894 7.5e-156 554.3 388 100.0
Potri.001G280500 Populus trichocarpa HOM05D006395 ORTHO05D007894 4.9e-99 365.5 366 74.0
PGR102G2618 Punica granatum HOM05D006395 ORTHO05D007894 4.9e-99 365.5 370 72.2
Atru.chr3.4150 Acer truncatum HOM05D006395 ORTHO05D007894 7.8e-97 358.2 364 75.3
Haze_24385 Corylus avellana HOM05D006395 ORTHO05D007894 4.0e-93 345.9 365 72.9
Manes.18G144200 Manihot esculenta HOM05D006395 ORTHO05D007894 1.2e-92 344.4 370 71.4
Prupe.6G052000 Prunus persica HOM05D006395 ORTHO05D007894 1.2e-92 344.4 372 71.0
Cfa011744 Carpinus fangiana HOM05D006395 ORTHO05D007894 2.0e-92 343.6 365 72.9
COL.COLO4_11118 Corchorus olitorius HOM05D006395 ORTHO05D007894 1.7e-91 340.5 364 72.8
GSVIVG01024681001 Vitis vinifera HOM05D006395 ORTHO05D007894 1.9e-90 337.0 370 69.5
Thecc.09G354500 Theobroma cacao HOM05D006395 ORTHO05D007894 7.1e-90 335.1 358 72.1
MD03G1062200 Malus domestica HOM05D006395 ORTHO05D007894 1.2e-89 334.3 371 70.4
Duzib168G0704 Durio zibethinus HOM05D006395 ORTHO05D007894 2.1e-89 333.6 375 66.1
QL01p039673 Quercus lobata HOM05D006395 ORTHO05D007894 1.8e-88 330.5 366 71.0
Cpa.g.sc2.390 Carica papaya HOM05D006395 ORTHO05D007894 1.5e-87 327.4 369 68.8
Sed0008967 Sechium edule HOM05D006395 ORTHO05D007894 3.3e-87 326.2 362 68.0
Gohir.D03G141400 Gossypium hirsutum HOM05D006395 ORTHO05D007894 1.6e-86 323.9 370 68.6
Psat5g157120 Pisum sativum HOM05D006395 ORTHO05D007894 1.8e-85 320.5 365 66.8
Lj6g0016849 Lotus japonicus HOM05D006395 ORTHO05D007894 2.4e-85 320.1 371 67.7
CiPaw.13G072800 Carya illinoinensis HOM05D006395 ORTHO05D007894 6.9e-85 318.5 372 69.6
FvH4_3g39360 Fragaria vesca HOM05D006395 ORTHO05D007894 5.8e-84 315.5 374 62.8
Nn2g10958 Nelumbo nucifera HOM05D006395 ORTHO05D007894 5.8e-84 315.5 364 67.9
RcHm_v2.0_Chr5g0070801 Rosa chinensis HOM05D006395 ORTHO05D007894 1.7e-83 313.9 367 69.2
Actinidia27062 Actinidia chinensis HOM05D006395 ORTHO05D007894 2.9e-83 313.2 357 71.4
FAN25G1635 Fragaria x ananassa HOM05D006395 ORTHO05D007894 3.8e-83 312.8 374 62.6
Sabra16G0174100 Salix brachista HOM05D006395 ORTHO05D007894 3.8e-83 312.8 366 68.9
Thhalv10016813m.g Eutrema salsugineum HOM05D006395 ORTHO05D007894 1.1e-82 311.2 365 66.6
Sp4g12670 Schrenkiella parvula HOM05D006395 ORTHO05D007894 1.1e-82 311.2 365 63.8
FAN11G3343 Fragaria x ananassa HOM05D006395 ORTHO05D007894 2.5e-82 310.1 365 62.7
Medtr3g465570 Medicago truncatula HOM05D006395 ORTHO05D007894 2.5e-82 310.1 359 66.3
MSTRG.21234 Avicennia marina HOM05D006395 ORTHO05D007894 7.1e-82 308.5 364 67.9
ClCG02G019360 Citrullus lanatus HOM05D006395 ORTHO05D007894 7.1e-82 308.5 362 65.2
vmacro02938 Vaccinium macrocarpon HOM05D006395 ORTHO05D007894 9.3e-82 308.1 371 62.3
CARHR123410 Cardamine hirsuta HOM05D006395 ORTHO05D007894 1.6e-81 307.4 364 66.2
Cc01_g14640 Coffea canephora HOM05D006395 ORTHO05D007894 1.6e-81 307.4 371 67.1
AL4G24880 Arabidopsis lyrata HOM05D006395 ORTHO05D007894 2.7e-81 306.6 365 67.1
FAN21G1642 Fragaria x ananassa HOM05D006395 ORTHO05D007894 2.7e-81 306.6 388 60.8
BraA04t17818Z Brassica rapa HOM05D006395 ORTHO05D007894 4.6e-81 305.8 365 66.3
A04p22790 Brassica napus HOM05D006395 ORTHO05D007894 7.9e-81 305.1 365 66.3
Carub.0004s1124 Capsella rubella HOM05D006395 ORTHO05D007894 7.9e-81 305.1 365 64.7
Rhsim13G0066200 Rhododendron simsii HOM05D006395 ORTHO05D007894 1.3e-80 304.3 367 68.4
AT2G30105 Arabidopsis thaliana HOM05D006395 ORTHO05D007894 2.3e-80 303.5 365 65.8
VMungo0540G1476 Vigna mungo HOM05D006395 ORTHO05D007894 6.7e-80 302.0 365 66.8
Glyma.18G059000 Glycine max HOM05D006395 ORTHO05D007894 8.7e-80 301.6 372 59.9
Lalb_Chr18g0051251 Lupinus albus HOM05D006395 ORTHO05D007894 8.7e-80 301.6 366 63.4
BcaC02g08052 Brassica carinata HOM05D006395 ORTHO05D007894 1.1e-79 301.2 364 66.2
C04p58990 Brassica napus HOM05D006395 ORTHO05D007894 1.1e-79 301.2 364 66.2
BcaB06g28340 Brassica carinata HOM05D006395 ORTHO05D007894 5.7e-79 298.9 365 64.9
PSO170G0213 Papaver somniferum HOM05D006395 ORTHO05D007894 5.7e-79 298.9 374 60.4
CsaV3_6G015980 Cucumis sativus L. HOM05D006395 ORTHO05D007894 7.4e-79 298.5 362 63.0
Ciclev10028704m.g Citrus clementina HOM05D006395 ORTHO05D007894 2.1e-78 297.0 366 65.8
BcaC02g08055 Brassica carinata HOM05D006395 ORTHO05D007894 2.8e-78 296.6 364 61.0
Peaxi162Scf00053g02113 Petunia axillaris HOM05D006395 ORTHO05D007894 8.2e-78 295.0 359 62.4
THA.LOC104800755 Tarenaya hassleriana HOM05D006395 ORTHO05D007894 8.2e-78 295.0 365 65.2
Lj2C1089G4 Lonicera japonica HOM05D006395 ORTHO05D007894 3.1e-77 293.1 365 64.7
PGSC0003DMG400020546 Solanum tuberosum HOM05D006395 ORTHO05D007894 3.1e-77 293.1 370 63.5
PSO017G1403 Papaver somniferum HOM05D006395 ORTHO05D007894 4.0e-77 292.7 371 62.8
MELO3C026838.2 Cucumis melo HOM05D006395 ORTHO05D007894 2.6e-76 290.0 366 62.0
TPR.G32918 Trifolium pratense HOM05D006395 ORTHO05D007894 2.6e-76 290.0 358 66.8
Hma1.2p1_0841F.1_g226810 Hydrangea macrophylla HOM05D006395 ORTHO05D007894 7.6e-76 288.5 362 66.9
Solyc06g007250.4 Solanum lycopersicum HOM05D006395 ORTHO05D007894 1.7e-75 287.3 370 64.6
Sopen06g002210 Solanum pennellii HOM05D006395 ORTHO05D007894 1.4e-74 284.3 370 64.3
TWI31G1172 Tripterygium wilfordii HOM05D006395 ORTHO05D007894 1.4e-74 284.3 326 70.6
CDE12G0063 Ceratophyllum demersum HOM05D006395 ORTHO05D007894 3.0e-72 276.6 361 62.6
Aa31LG5G6570 Aethionema arabicum HOM05D006395 ORTHO05D007894 1.1e-71 274.6 363 61.7
DCAR_018217 Daucus carota HOM05D006395 ORTHO05D007894 2.5e-71 273.5 363 64.2
Dinv28676 Davidia involucrata HOM05D006395 ORTHO05D007894 7.4e-71 271.9 220 63.6
CAN.G241.20 Capsicum annuum HOM05D006395 ORTHO05D007894 1.3e-70 271.2 365 62.2
Hund05040 Selenicereus undatus HOM05D006395 ORTHO05D007894 2.2e-70 270.4 367 61.3
Aqoxy1G01323 Aquilegia oxysepala HOM05D006395 ORTHO05D007894 1.4e-69 267.7 365 58.9
Zm00001eb046860 Zea mays HOM05D006395 ORTHO05D007894 2.4e-69 266.9 366 63.9
SGA_v2.0_scaffold20G09294 Striga asiatica HOM05D006395 ORTHO05D007894 1.5e-68 264.2 370 59.7
HPP92_025106 Vanilla planifolia HOM05D006395 ORTHO05D007894 1.5e-68 264.2 363 59.8
Gorai.003G148100 Gossypium raimondii HOM05D006395 ORTHO05D007894 2.6e-68 263.5 333 67.3
EL10Ac7g15889 Beta vulgaris HOM05D006395 ORTHO05D007894 3.4e-68 263.1 372 59.1
CSS0046123 Camellia sinensis var. sinensis HOM05D006395 ORTHO05D007894 4.5e-68 262.7 242 58.3
Nitab4.5_0001941g0070 Nicotiana tabacum HOM05D006395 ORTHO05D007894 5.9e-68 262.3 370 61.4
arahy.Tifrunner.gnm1.ann1.775QX7 Arachis hypogaea HOM05D006395 ORTHO05D007894 1.0e-67 261.5 365 61.4
arahy.Tifrunner.gnm1.ann1.P58CS4 Arachis hypogaea HOM05D006395 ORTHO05D007894 3.8e-67 259.6 365 58.1
Migut.D00855 Erythranthe guttata HOM05D006395 ORTHO05D007894 1.4e-66 257.7 368 53.3
Ca_14986_v3 Cicer arietinum L. HOM05D006395 ORTHO05D007894 1.9e-66 257.3 320 69.4
Phvul.006G072100 Phaseolus vulgaris HOM05D006395 ORTHO05D007894 3.0e-64 250.0 228 55.3
Gohir.A03G027300 Gossypium hirsutum HOM05D006395 ORTHO05D007894 2.0e-63 247.3 311 69.1
Actinidia23216 Actinidia chinensis HOM05D006395 ORTHO05D007894 5.7e-63 245.7 218 59.2
Sc06g0008170 Simmondsia chinensis HOM05D006395 ORTHO05D007894 5.7e-63 245.7 363 56.5
MBI15_g36485_MAGBIO Magnolia biondii HOM05D006395 ORTHO05D007894 5.3e-61 239.2 391 56.8
BolC4t27411H Brassica oleracea HOM05D006395 ORTHO05D007894 3.4e-60 236.5 205 57.6
FAN16G1183 Fragaria x ananassa HOM05D006395 ORTHO05D007894 6.1e-57 225.7 239 50.2
Nitab4.5_0000967g0070 Nicotiana tabacum HOM05D006395 ORTHO05D007894 6.7e-56 222.2 370 52.2
AUR62036248 Chenopodium quinoa HOM05D006395 ORTHO05D007894 4.4e-55 219.5 368 51.9
ECA236G5129 Erigeron canadensis HOM05D006395 ORTHO05D007894 9.7e-55 218.4 368 58.7
Mapoly0043s0125 Marchantia polymorpha HOM05D006395 ORTHO05D007894 5.3e-53 212.6 368 49.5
HanXRQChr05g0130471 Helianthus annuus HOM05D006395 ORTHO05D007894 2.6e-52 210.3 368 56.8
Lsat_1_v5_gn_8_111040 Lactuca sativa HOM05D006395 ORTHO05D007894 2.5e-50 203.8 370 55.7
ATR0174G031 Amborella trichopoda HOM05D006395 ORTHO05D007894 2.1e-49 200.7 202 49.5
AUR62009698 Chenopodium quinoa HOM05D006395 ORTHO05D007894 1.4e-48 198.0 368 54.9
TAR357G0003 Trochodendron aralioides HOM05D006395 ORTHO05D007894 1.4e-48 198.0 283 63.3
Lj9A530T24 Lonicera japonica HOM05D006395 ORTHO05D007894 2.0e-44 184.1 192 50.5
Hma1.2p1_0841F.1_g226820 Hydrangea macrophylla HOM05D006395 ORTHO05D007894 7.7e-44 182.2 254 71.3
AagrBONN_evm.TU.Sc2ySwM_228.749 Anthoceros agrestis HOM05D006395 ORTHO05D007894 1.0e-43 181.8 359 50.4
Cc03_g12880 Coffea canephora HOM05D006395 ORTHO05D007894 1.9e-42 177.6 203 51.7
SEGI_13349 Sequoiadendron giganteum HOM05D006395 ORTHO05D007894 1.7e-38 164.5 173 50.3
unitig_0.g1179 Utricularia gibba HOM05D006395 ORTHO05D007894 5.4e-37 159.5 364 51.1
SMO198G0061 Selaginella moellendorffii HOM05D006395 ORTHO05D007894 4.5e-36 156.4 365 46.3
Glyma.11G166200 Glycine max HOM05D006395 ORTHO05D007894 5.2e-32 142.9 141 51.8
Pp3c8_15530 Physcomitrium patens HOM05D006395 ORTHO05D007894 8.3e-30 135.6 217 34.1
Duzib150G1550 Durio zibethinus HOM05D006395 ORTHO05D007894 3.3e-26 123.6 116 55.2
Os10g0456200 Oryza sativa ssp. japonica HOM05D006395 ORTHO05D007894 3.3e-26 123.6 135 49.6
CAN.G241.12 Capsicum annuum HOM05D006395 ORTHO05D007894 5.5e-26 122.9 261 57.5
RcHm_v2.0_Chr5g0070821 Rosa chinensis HOM05D006395 ORTHO05D007894 1.7e-22 111.3 212 57.1
Nitab4.5_0000967g0090 Nicotiana tabacum HOM05D000734 ORTHO05D002223 3.5e-20 103.6 83 62.7
SEGI_40979 Sequoiadendron giganteum HOM05D006395 ORTHO05D007894 8.6e-19 99.0 194 61.9
PSO782G5619 Papaver somniferum HOM05D006395 ORTHO05D007894 9.5e-18 95.5 61 73.8
Cc03_g12890 Coffea canephora HOM05D006395 ORTHO05D007894 4.7e-17 93.2 60 73.3
Cre16.g684800 Chlamydomonas reinhardtii HOM05D006395 ORTHO05D007894 1.5e-15 88.2 274 25.9
MD11G1065800 Malus domestica HOM05D006395 ORTHO05D007894 2.6e-15 87.4 115 43.5
PSO339G4463 Papaver somniferum HOM05D006395 ORTHO05D007894 2.2e-14 84.3 54 72.2
Migut.D00856 Erythranthe guttata HOM05D006395 ORTHO05D007894 6.4e-14 82.8 69 55.1
ATR0174G042 Amborella trichopoda HOM05D006395 ORTHO05D007894 1.9e-13 81.3 59 64.4
PRCOL_00004668 Prasinoderma coloniale HOM05D006395 ORTHO05D007894 1.9e-13 81.3 257 29.2
SEGI_33382 Sequoiadendron giganteum HOM05D006395 ORTHO05D007894 1.9e-13 81.3 71 54.9
CBR_g32352 Chara braunii HOM05D000019 ORTHO05D000002 5.0e-11 73.2 126 29.4
Nn4g23380 Nelumbo nucifera HOM05D006238 ORTHO05D007458 2.8e-09 67.4 249 22.9
PSO675G0236 Papaver somniferum HOM05D006395 ORTHO05D007894 4.7e-09 66.6 91 44.0
CDE10G0764 Ceratophyllum demersum HOM05D000773 ORTHO05D000588 1.4e-08 65.1 86 40.7
CBR_g52452 Chara braunii HOM05D006395 ORTHO05D007458 1.4e-08 65.1 56 53.6
Nitab4.5_0008731g0020 Nicotiana tabacum HOM05D000734 ORTHO05D002223 3.1e-08 63.9 52 59.6
FAN06G1459 Fragaria x ananassa HOM05D006395 ORTHO05D007894 8.9e-08 62.4 37 75.7
TPR.G12219 Trifolium pratense HOM05D006238 ORTHO05D007458 8.9e-08 62.4 87 34.5
Os03g0212200 Oryza sativa ssp. japonica HOM05D006238 ORTHO05D007458 1.5e-07 61.6 61 41.0
arahy.Tifrunner.gnm1.ann1.XMW6VU Arachis hypogaea HOM05D006238 ORTHO05D007458 2.0e-07 61.2 85 35.3
Pp3c19_5770 Physcomitrium patens HOM05D006238 ORTHO05D007458 5.8e-07 59.7 60 51.7
Glyma.04G164100 Glycine max HOM05D006238 ORTHO05D007458 7.5e-07 59.3 78 34.6
HanXRQChr02g0042551 Helianthus annuus HOM05D006238 ORTHO05D007458 9.8e-07 58.9 76 39.5
Medtr3g023830 Medicago truncatula HOM05D006238 ORTHO05D007458 9.8e-07 58.9 94 31.9
HPP92_013436 Vanilla planifolia HOM05D001674 ORTHO05D008374 9.8e-07 58.9 57 47.4
Eucgr.K02503 Eucalyptus grandis HOM05D006238 ORTHO05D007458 1.3e-06 58.5 61 42.6
Sopen12g019730 Solanum pennellii HOM05D006238 ORTHO05D007458 1.7e-06 58.2 78 33.3
Solyc03g115410.3 Solanum lycopersicum HOM05D006238 ORTHO05D007458 2.9e-06 57.4 63 38.1
Gohir.D12G183800 Gossypium hirsutum HOM05D006238 ORTHO05D007458 3.7e-06 57.0 72 37.5
Solyc12g040320.2 Solanum lycopersicum HOM05D006238 ORTHO05D007458 3.7e-06 57.0 67 37.3
Atru.chr9.382 Acer truncatum HOM05D006238 ORTHO05D007458 4.9e-06 56.6 71 38.0
Duzib205G0643 Durio zibethinus HOM05D006238 ORTHO05D007458 4.9e-06 56.6 62 38.7
arahy.Tifrunner.gnm1.ann1.G7J9WL Arachis hypogaea HOM05D006238 ORTHO05D007458 6.4e-06 56.2 69 36.2
ECA247G0665 Erigeron canadensis HOM05D000006 ORTHO05D007458 6.4e-06 56.2 72 37.5
Glyma.06G201600 Glycine max HOM05D006238 ORTHO05D007458 6.4e-06 56.2 75 34.7
MCO14G433 Micromonas commoda HOM05D006395 ORTHO05D007894 6.4e-06 56.2 83 33.7
PSO384G2798 Papaver somniferum HOM05D006238 ORTHO05D007458 6.4e-06 56.2 62 37.1
Sopen03g034410 Solanum pennellii HOM05D006238 ORTHO05D007458 6.4e-06 56.2 63 38.1
Gohir.A12G181100 Gossypium hirsutum HOM05D006238 ORTHO05D007458 8.3e-06 55.8 72 36.1


User provided reference genes

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