Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B02169 Eucalyptus grandis HOM05D002281 ORTHO05D005599 0.0e+00 2550.8 1290 100.0
Thecc.05G264800 Theobroma cacao HOM05D002281 ORTHO05D005599 0.0e+00 2277.3 1291 88.2
Gohir.A13G102900 Gossypium hirsutum HOM05D002281 ORTHO05D005599 0.0e+00 2268.8 1291 87.8
GSVIVG01026355001 Vitis vinifera HOM05D002281 ORTHO05D005599 0.0e+00 2265.3 1302 86.9
Gorai.013G119000 Gossypium raimondii HOM05D002281 ORTHO05D005599 0.0e+00 2265.0 1291 87.7
Dinv05786 Davidia involucrata HOM05D002281 ORTHO05D005599 0.0e+00 2263.8 1292 87.9
PGR142G2635 Punica granatum HOM05D002281 ORTHO05D005599 0.0e+00 2263.4 1290 87.5
CiPaw.07G076600 Carya illinoinensis HOM05D002281 ORTHO05D005599 0.0e+00 2261.9 1292 87.9
Gohir.D13G106101 Gossypium hirsutum HOM05D002281 ORTHO05D005599 0.0e+00 2260.7 1291 87.5
Cfa006304 Carpinus fangiana HOM05D002281 ORTHO05D005599 0.0e+00 2258.8 1292 87.5
CANSAT54G0020 Cannabis sativa HOM05D002281 ORTHO05D005599 0.0e+00 2258.4 1292 87.2
Prupe.6G354800 Prunus persica HOM05D002281 ORTHO05D005599 0.0e+00 2257.3 1292 87.5
CSS0028465 Camellia sinensis var. sinensis HOM05D002281 ORTHO05D005599 0.0e+00 2256.1 1292 86.8
Atru.chr2.1138 Acer truncatum HOM05D002281 ORTHO05D005599 0.0e+00 2250.3 1291 87.8
Potri.019G025200 Populus trichocarpa HOM05D002281 ORTHO05D005599 0.0e+00 2237.2 1292 86.5
FvH4_6g01330 Fragaria vesca HOM05D002281 ORTHO05D005599 0.0e+00 2233.4 1292 86.5
Manes.09G145500 Manihot esculenta HOM05D002281 ORTHO05D005599 0.0e+00 2233.4 1291 86.2
FAN05G1240 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 2224.9 1303 85.6
TWI60G0078 Tripterygium wilfordii HOM05D002281 ORTHO05D005599 0.0e+00 2224.5 1291 86.0
FAN14G5004 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 2224.1 1293 86.3
FAN09G1447 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 2218.7 1292 86.0
Duzib106G1897 Durio zibethinus HOM05D002281 ORTHO05D005599 0.0e+00 2218.0 1291 86.7
TAR362G0445 Trochodendron aralioides HOM05D002281 ORTHO05D005599 0.0e+00 2209.1 1292 85.8
Potri.013G051200 Populus trichocarpa HOM05D002281 ORTHO05D005599 0.0e+00 2199.9 1292 85.3
Phvul.006G107600 Phaseolus vulgaris HOM05D002281 ORTHO05D005599 0.0e+00 2192.2 1293 85.3
Glyma.19G250600 Glycine max HOM05D002281 ORTHO05D005599 0.0e+00 2190.6 1293 85.2
Hma1.2p1_0153F.1_g067890 Hydrangea macrophylla HOM05D002281 ORTHO05D005599 0.0e+00 2190.6 1297 84.9
Glyma.03G253000 Glycine max HOM05D002281 ORTHO05D005599 0.0e+00 2190.2 1293 85.5
arahy.Tifrunner.gnm1.ann1.KCE1UK Arachis hypogaea HOM05D002281 ORTHO05D005599 0.0e+00 2189.1 1326 83.6
Sabra19G0037800 Salix brachista HOM05D002281 ORTHO05D005599 0.0e+00 2189.1 1308 84.2
Medtr7g116590 Medicago truncatula HOM05D002281 ORTHO05D005599 0.0e+00 2186.0 1295 85.0
Solyc11g013280.1 Solanum lycopersicum HOM05D002281 ORTHO05D005599 0.0e+00 2185.6 1293 84.5
Sabra19G0034800 Salix brachista HOM05D002281 ORTHO05D005599 0.0e+00 2184.8 1308 83.9
Carub.0006s1667 Capsella rubella HOM05D002281 ORTHO05D005599 0.0e+00 2184.1 1290 84.7
THA.LOC104820753 Tarenaya hassleriana HOM05D002281 ORTHO05D005599 0.0e+00 2182.5 1290 85.0
Lj1g0020458 Lotus japonicus HOM05D002281 ORTHO05D005599 0.0e+00 2181.4 1293 84.9
AL6G29660 Arabidopsis lyrata HOM05D002281 ORTHO05D005599 0.0e+00 2181.0 1290 84.5
AT5G18410 Arabidopsis thaliana HOM05D002281 ORTHO05D005599 0.0e+00 2180.2 1290 84.6
Ciclev10023801m.g Citrus clementina HOM05D002281 ORTHO05D005599 0.0e+00 2179.4 1295 85.4
VMungo0540G0745 Vigna mungo HOM05D002281 ORTHO05D005599 0.0e+00 2177.9 1293 84.8
BolC3t13512H Brassica oleracea HOM05D002281 ORTHO05D005599 0.0e+00 2175.6 1295 84.1
Thhalv10012457m.g Eutrema salsugineum HOM05D002281 ORTHO05D005599 0.0e+00 2175.6 1291 84.6
Sopen11g008300 Solanum pennellii HOM05D002281 ORTHO05D005599 0.0e+00 2174.1 1293 84.2
CARHR194610 Cardamine hirsuta HOM05D002281 ORTHO05D005599 0.0e+00 2172.9 1290 84.2
Sed0017844 Sechium edule HOM05D002281 ORTHO05D005599 0.0e+00 2172.9 1297 84.0
COL.COLO4_38179 Corchorus olitorius HOM05D002281 ORTHO05D005599 0.0e+00 2169.8 1291 84.8
ECA233G3880 Erigeron canadensis HOM05D002281 ORTHO05D005599 0.0e+00 2163.7 1290 83.4
MSTRG.1472 Avicennia marina HOM05D002281 ORTHO05D005599 0.0e+00 2157.9 1293 83.1
BraA03t10208Z Brassica rapa HOM05D002281 ORTHO05D005599 0.0e+00 2157.1 1298 83.4
Sc09g0001770 Simmondsia chinensis HOM05D002281 ORTHO05D005599 0.0e+00 2155.2 1291 83.3
HanXRQChr04g0111671 Helianthus annuus HOM05D002281 ORTHO05D005599 0.0e+00 2149.8 1301 82.4
Migut.C01166 Erythranthe guttata HOM05D002281 ORTHO05D005599 0.0e+00 2147.9 1293 82.6
SalBow7G0462 Salvia bowleyana HOM05D002281 ORTHO05D005599 0.0e+00 2141.7 1293 82.3
Sp6g25910 Schrenkiella parvula HOM05D002281 ORTHO05D005599 0.0e+00 2138.6 1290 83.3
Nn1g03089 Nelumbo nucifera HOM05D002281 ORTHO05D005599 0.0e+00 2138.2 1292 82.9
Lsat_1_v5_gn_8_2941 Lactuca sativa HOM05D002281 ORTHO05D005599 0.0e+00 2133.2 1298 82.2
arahy.Tifrunner.gnm1.ann1.T4Q4MP Arachis hypogaea HOM05D002281 ORTHO05D005599 0.0e+00 2129.8 1294 83.4
Aqoxy5G01434 Aquilegia oxysepala HOM05D002281 ORTHO05D005599 0.0e+00 2127.8 1292 82.4
FAN05G1274 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 2125.9 1292 83.0
Nitab4.5_0000494g0100 Nicotiana tabacum HOM05D002281 ORTHO05D005599 0.0e+00 2125.5 1293 82.8
A03p08830 Brassica napus HOM05D002281 ORTHO05D005599 0.0e+00 2125.1 1299 82.4
Ca_09474_v3 Cicer arietinum L. HOM05D002281 ORTHO05D005599 0.0e+00 2120.5 1312 82.4
SalBow7G2659 Salvia bowleyana HOM05D002281 ORTHO05D005599 0.0e+00 2119.7 1293 81.8
C03p10320 Brassica napus HOM05D002281 ORTHO05D005599 0.0e+00 2113.2 1296 82.4
PSO674G0074 Papaver somniferum HOM05D002281 ORTHO05D005599 0.0e+00 2112.4 1292 82.1
PSO170G6144 Papaver somniferum HOM05D002281 ORTHO05D005599 0.0e+00 2101.2 1292 81.7
Haze_04485 Corylus avellana HOM05D002281 ORTHO05D005599 0.0e+00 2098.9 1312 81.9
EL10Ac4g09788 Beta vulgaris HOM05D002281 ORTHO05D005599 0.0e+00 2095.1 1292 80.7
BcaB01g05191 Brassica carinata HOM05D002281 ORTHO05D005599 0.0e+00 2089.7 1299 81.4
Nitab4.5_0000051g0330 Nicotiana tabacum HOM05D002281 ORTHO05D005599 0.0e+00 2036.5 1420 75.0
SGA_v2.0_scaffold52G18996 Striga asiatica HOM05D002281 ORTHO05D005599 0.0e+00 2008.4 1220 81.9
Sabra13G0046600 Salix brachista HOM05D002281 ORTHO05D005599 0.0e+00 1975.7 1553 68.1
Cc10_g10590 Coffea canephora HOM05D002281 ORTHO05D005599 0.0e+00 1969.5 1173 83.7
Hund07164 Selenicereus undatus HOM05D002281 ORTHO05D005599 0.0e+00 1953.7 1227 79.3
Aa31LG11G11220 Aethionema arabicum HOM05D002281 ORTHO05D005599 0.0e+00 1942.5 1291 77.4
Os03g0143800 Oryza sativa ssp. japonica HOM05D002281 ORTHO05D005599 0.0e+00 1908.3 1297 73.8
Zm00001eb003550 Zea mays HOM05D002281 ORTHO05D005599 0.0e+00 1883.6 1294 72.4
AUR62000642 Chenopodium quinoa HOM05D002281 ORTHO05D005599 0.0e+00 1785.8 1320 71.1
Cpa.g.sc51.37 Carica papaya HOM05D002281 ORTHO05D005599 0.0e+00 1662.9 961 87.3
RcHm_v2.0_Chr3g0448901 Rosa chinensis HOM05D002281 ORTHO05D005599 0.0e+00 1635.5 943 85.7
Psat0s3583g0040 Pisum sativum HOM05D002281 ORTHO05D005599 0.0e+00 1631.7 960 85.9
Rhsim05G0168900 Rhododendron simsii HOM05D002281 ORTHO05D005599 0.0e+00 1627.8 1069 78.1
Actinidia03823 Actinidia chinensis HOM05D002281 ORTHO05D005599 0.0e+00 1572.0 908 85.1
MELO3C015463.2 Cucumis melo HOM05D002281 ORTHO05D005599 0.0e+00 1540.8 939 81.5
HPP92_013019 Vanilla planifolia HOM05D002281 ORTHO05D005599 0.0e+00 1538.9 1210 65.6
AagrBONN_evm.TU.Sc2ySwM_344.4016 Anthoceros agrestis HOM05D002281 ORTHO05D005599 0.0e+00 1523.1 1298 60.3
Mapoly0078s0045 Marchantia polymorpha HOM05D002281 ORTHO05D005599 0.0e+00 1521.5 1296 59.1
Lalb_Chr18g0044201 Lupinus albus HOM05D002281 ORTHO05D005599 0.0e+00 1520.4 915 82.7
Pp3c21_8020 Physcomitrium patens HOM05D002281 ORTHO05D005599 0.0e+00 1503.4 1334 57.3
ClCG03G011410 Citrullus lanatus HOM05D002281 ORTHO05D005599 0.0e+00 1500.0 911 82.2
CsaV3_1G040360 Cucumis sativus L. HOM05D002281 ORTHO05D005599 0.0e+00 1496.5 913 81.8
unitig_736.g22260 Utricularia gibba HOM05D002281 ORTHO05D005599 0.0e+00 1484.9 1187 65.1
SMO348G0052 Selaginella moellendorffii HOM05D002281 ORTHO05D005599 0.0e+00 1464.5 1293 57.0
MD12G1252900 Malus domestica HOM05D002281 ORTHO05D005599 0.0e+00 1452.6 848 84.9
Peaxi162Scf00285g00226 Petunia axillaris HOM05D002281 ORTHO05D005599 0.0e+00 1445.6 912 79.3
DCAR_005524 Daucus carota HOM05D002281 ORTHO05D005599 0.0e+00 1375.5 955 73.7
Pp3c2_6040 Physcomitrium patens HOM05D002281 ORTHO05D005599 0.0e+00 1337.4 1316 53.0
ATR0787G096 Amborella trichopoda HOM05D002281 ORTHO05D005599 0.0e+00 1284.6 917 69.5
Hma1.2p1_0153F.1_g067920 Hydrangea macrophylla HOM05D002281 ORTHO05D005599 0.0e+00 1143.3 687 84.1
CAN.G61.7 Capsicum annuum HOM05D002281 ORTHO05D005599 2.9e-257 892.9 803 60.5
Ah.06g188740 Amaranthus hybridus HOM05D002281 ORTHO05D005599 5.6e-248 862.1 828 57.1
Lj2A49T37 Lonicera japonica HOM05D002281 ORTHO05D005599 7.5e-237 825.1 480 87.3
AUR62006997 Chenopodium quinoa HOM05D002281 ORTHO05D005599 1.7e-217 760.8 499 78.0
MD12G1252700 Malus domestica HOM05D002281 ORTHO05D005599 5.8e-213 745.7 455 83.7
SHI14430 Sapria himalayana HOM05D002281 ORTHO05D005599 1.6e-199 701.0 556 66.2
Actinidia03824 Actinidia chinensis HOM05D002281 ORTHO05D005599 5.0e-180 636.3 348 92.8
RcHm_v2.0_Chr3g0448911 Rosa chinensis HOM05D002281 ORTHO05D005599 1.4e-177 628.2 348 91.4
SEGI_41506 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 3.9e-177 626.7 437 71.2
CAN.G61.6 Capsicum annuum HOM05D002281 ORTHO05D005599 1.3e-175 621.7 348 90.5
Lalb_Chr18g0044191 Lupinus albus HOM05D002281 ORTHO05D005599 6.1e-170 602.8 348 87.9
ATR0787G220 Amborella trichopoda HOM05D002281 ORTHO05D005599 5.3e-166 589.7 348 86.2
CDE01G0796 Ceratophyllum demersum HOM05D002281 ORTHO05D005599 2.2e-164 584.3 444 66.4
ClCG03G011400 Citrullus lanatus HOM05D002281 ORTHO05D005599 1.2e-162 578.6 351 84.6
CsaV3_1G040370 Cucumis sativus L. HOM05D002281 ORTHO05D005599 1.6e-157 561.6 348 83.3
Psat0s2603g0080 Pisum sativum HOM05D002281 ORTHO05D005599 2.5e-155 554.3 335 81.2
CDE01G0576 Ceratophyllum demersum HOM05D002281 ORTHO05D005599 2.7e-154 550.8 376 72.9
CBR_g23328 Chara braunii HOM05D002281 ORTHO05D005599 7.0e-150 536.2 642 45.2
Cpa.g.sc51.41 Carica papaya HOM05D002281 ORTHO05D005599 3.0e-145 520.8 302 84.1
vmacro19963 Vaccinium macrocarpon HOM05D002281 ORTHO05D005599 1.5e-144 518.5 396 72.5
Peaxi162Scf00285g00225 Petunia axillaris HOM05D002281 ORTHO05D005599 5.4e-142 510.0 275 93.1
DCAR_005525 Daucus carota HOM05D002281 ORTHO05D005599 4.7e-130 470.3 254 92.5
HPP92_013016 Vanilla planifolia HOM05D002281 ORTHO05D005599 8.6e-124 449.5 307 72.3
CAN.G61.8 Capsicum annuum HOM05D002281 ORTHO05D005599 2.5e-123 448.0 410 60.0
Haze_04492 Corylus avellana HOM05D002281 ORTHO05D005599 1.1e-118 432.6 275 83.3
Lj2A49G34 Lonicera japonica HOM05D002281 ORTHO05D005599 1.1e-115 422.5 244 85.7
HPP92_013015 Vanilla planifolia HOM05D002281 ORTHO05D005599 1.1e-110 406.0 348 62.4
arahy.Tifrunner.gnm1.ann1.I7KFZB Arachis hypogaea HOM05D002281 ORTHO05D005599 3.8e-103 380.9 266 77.8
FAN14G3852 Fragaria x ananassa HOM05D002281 ORTHO05D006774 6.4e-103 380.2 260 76.2
SEGI_00068 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 7.1e-86 323.6 270 62.6
Hma1.2p1_0153F.1_g067900 Hydrangea macrophylla HOM05D002281 ORTHO05D005599 3.1e-73 281.6 154 91.6
CBR_g23326 Chara braunii HOM05D002281 ORTHO05D005599 8.5e-71 273.5 468 34.0
vmacro19965 Vaccinium macrocarpon HOM05D002281 ORTHO05D005599 1.4e-70 272.7 167 78.4
Ah.06g188770 Amaranthus hybridus HOM05D002281 ORTHO05D005599 7.2e-62 243.8 134 87.3
vmacro19966 Vaccinium macrocarpon HOM05D002281 ORTHO05D005599 4.4e-59 234.6 426 38.0
Lj2A50T26 Lonicera japonica HOM05D002281 ORTHO05D005599 6.3e-58 230.7 131 84.7
Cc10_g10600 Coffea canephora HOM05D002281 ORTHO05D005599 1.7e-55 222.6 130 85.4
SHI14432 Sapria himalayana HOM05D002281 ORTHO05D005599 2.5e-54 218.8 142 73.2
Lj2A49G35 Lonicera japonica HOM05D002281 ORTHO05D005599 3.2e-54 218.4 130 81.5
Lj2A49T38 Lonicera japonica HOM05D002281 ORTHO05D005599 1.4e-52 213.0 119 85.7
Gorai.007G272700 Gossypium raimondii HOM05D002281 ORTHO05D005599 1.4e-41 176.4 100 81.0
CDE02G3044 Ceratophyllum demersum HOM05D002281 ORTHO05D005599 2.4e-41 175.6 134 63.4
BraA03t10210Z Brassica rapa HOM05D002281 ORTHO05D005599 3.1e-41 175.3 123 74.8
Gohir.D11G253675 Gossypium hirsutum HOM05D002281 ORTHO05D005599 9.1e-41 173.7 100 80.0
CBR_g74560 Chara braunii HOM05D002281 ORTHO05D005599 1.1e-38 166.8 164 53.7
A03p08860 Brassica napus HOM05D002281 ORTHO05D005599 1.5e-35 156.4 123 67.5
SEGI_02952 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 1.4e-33 149.8 113 65.5
FAN14G5351 Fragaria x ananassa HOM05D002281 ORTHO05D006774 2.4e-33 149.1 128 64.1
SEGI_33538 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 5.2e-28 131.3 96 63.5
Gohir.D11G253550 Gossypium hirsutum HOM05D002281 ORTHO05D005599 9.8e-27 127.1 74 81.1
Gorai.007G272500 Gossypium raimondii HOM05D002281 ORTHO05D005599 9.8e-27 127.1 74 79.7
SEGI_28731 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 2.2e-26 125.9 85 68.2
SHI14427 Sapria himalayana HOM05D000030 ORTHO05D000009 1.3e-23 116.7 130 53.8
Gohir.A11G244201 Gossypium hirsutum HOM05D002281 ORTHO05D005599 2.3e-23 115.9 72 73.6
Nn6g32299 Nelumbo nucifera HOM05D002281 ORTHO05D005599 5.0e-23 114.8 73 76.7
arahy.Tifrunner.gnm1.ann1.57298L Arachis hypogaea HOM05D002281 ORTHO05D005599 5.9e-16 91.3 99 54.5
HPP92_013017 Vanilla planifolia HOM05D002281 ORTHO05D005599 5.6e-14 84.7 54 75.9
QL06p040095 Quercus lobata HOM05D002281 ORTHO05D005599 4.4e-11 75.1 77 51.9
Ah.06g188760 Amaranthus hybridus HOM05D002281 ORTHO05D006774 3.2e-09 68.9 142 34.5
vmacro19964 Vaccinium macrocarpon HOM05D002281 ORTHO05D005599 7.8e-08 64.3 36 77.8


User provided reference genes

Program Settings