Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B02151 Eucalyptus grandis HOM05D005077 ORTHO05D006889 0.0e+00 1438.3 727 100.0
Eucgr.B02424 Eucalyptus grandis HOM05D005077 ORTHO05D006889 2.0e-287 992.3 513 98.4
Prupe.6G350500 Prunus persica HOM05D005077 ORTHO05D006889 6.3e-281 970.7 745 65.2
Cfa006359 Carpinus fangiana HOM05D005077 ORTHO05D006889 6.5e-278 960.7 745 64.3
MD04G1230700 Malus domestica HOM05D005077 ORTHO05D006889 6.5e-278 960.7 744 66.1
PGR142G0621 Punica granatum HOM05D005077 ORTHO05D006889 2.5e-277 958.7 739 67.3
Thecc.05G270400 Theobroma cacao HOM05D005077 ORTHO05D006889 2.5e-277 958.7 745 65.1
GSVIVG01023486001 Vitis vinifera HOM05D005077 ORTHO05D006889 3.9e-275 951.4 742 65.4
Duzib177G0384 Durio zibethinus HOM05D005077 ORTHO05D006889 8.8e-275 950.3 745 64.6
CiPaw.07G073200 Carya illinoinensis HOM05D005077 ORTHO05D006889 1.7e-273 946.0 745 63.8
Gohir.D11G257100 Gossypium hirsutum HOM05D005077 ORTHO05D006889 4.1e-272 941.4 745 63.6
Gorai.007G275500 Gossypium raimondii HOM05D005077 ORTHO05D006889 5.3e-272 941.0 745 63.5
Potri.013G047400 Populus trichocarpa HOM05D005077 ORTHO05D006889 3.9e-267 924.9 745 63.0
Manes.08G139800 Manihot esculenta HOM05D005077 ORTHO05D006889 5.1e-267 924.5 742 63.5
CANSAT54G1999 Cannabis sativa HOM05D005077 ORTHO05D006889 6.7e-267 924.1 743 63.1
TWI36G1092 Tripterygium wilfordii HOM05D005077 ORTHO05D006889 3.3e-266 921.8 744 64.2
Potri.019G019600 Populus trichocarpa HOM05D005077 ORTHO05D006889 3.7e-265 918.3 743 62.3
Actinidia39994 Actinidia chinensis HOM05D005077 ORTHO05D006889 7.2e-261 904.0 745 61.9
COL.COLO4_15493 Corchorus olitorius HOM05D005077 ORTHO05D006889 2.1e-260 902.5 759 61.4
RcHm_v2.0_Chr3g0449521 Rosa chinensis HOM05D005077 ORTHO05D006889 8.8e-259 897.1 743 62.4
TAR362G0145 Trochodendron aralioides HOM05D005077 ORTHO05D006889 1.5e-258 896.3 745 61.6
MELO3C008703.2 Cucumis melo HOM05D005077 ORTHO05D006889 3.3e-258 895.2 746 62.5
Sed0014730 Sechium edule HOM05D005077 ORTHO05D006889 3.3e-258 895.2 746 62.3
Lj1g0022218 Lotus japonicus HOM05D005077 ORTHO05D006889 5.7e-258 894.4 742 61.5
Psat3g087440 Pisum sativum HOM05D005077 ORTHO05D006889 6.3e-257 891.0 744 60.3
FvH4_6g01810 Fragaria vesca HOM05D005077 ORTHO05D006889 5.3e-256 887.9 743 62.4
Phvul.001G114900 Phaseolus vulgaris HOM05D005077 ORTHO05D006889 2.9e-254 882.1 749 61.3
Glyma.19G115700 Glycine max HOM05D005077 ORTHO05D006889 5.0e-254 881.3 745 61.3
Solyc04g010080.3 Solanum lycopersicum HOM05D005077 ORTHO05D006889 6.5e-254 880.9 736 62.0
Ca_08303_v3 Cicer arietinum L. HOM05D005077 ORTHO05D006889 2.5e-253 879.0 784 58.0
Sopen04g005220 Solanum pennellii HOM05D005077 ORTHO05D006889 9.4e-253 877.1 736 61.7
VMungo1383G1518 Vigna mungo HOM05D005077 ORTHO05D006889 2.7e-252 875.5 743 60.3
Medtr7g111650 Medicago truncatula HOM05D005077 ORTHO05D006889 1.8e-251 872.8 741 59.5
TPR.G4698 Trifolium pratense HOM05D005077 ORTHO05D006889 3.7e-249 865.1 743 59.4
PGSC0003DMG400011494 Solanum tuberosum HOM05D005077 ORTHO05D006889 1.1e-248 863.6 764 59.4
ClCG11G010550 Citrullus lanatus HOM05D005077 ORTHO05D006889 5.3e-248 861.3 740 61.2
HanXRQChr14g0454211 Helianthus annuus HOM05D005077 ORTHO05D006889 7.0e-248 860.9 748 58.8
Cpa.g.sc306.8 Carica papaya HOM05D005077 ORTHO05D006889 7.7e-247 857.4 660 64.7
THA.LOC104827285 Tarenaya hassleriana HOM05D005077 ORTHO05D006889 4.2e-245 851.7 747 60.8
Sc20g0000660 Simmondsia chinensis HOM05D005077 ORTHO05D006889 3.6e-244 848.6 746 58.8
CARHR078630 Cardamine hirsuta HOM05D005077 ORTHO05D006889 8.0e-244 847.4 747 59.4
Oeu006006.2 Olea europaea HOM05D005077 ORTHO05D006889 1.8e-243 846.3 745 59.1
SalBow3G3009 Salvia bowleyana HOM05D005077 ORTHO05D006889 2.6e-242 842.4 748 58.7
Thhalv10020155m.g Eutrema salsugineum HOM05D005077 ORTHO05D006889 5.7e-242 841.3 747 58.6
BcaB04g19332 Brassica carinata HOM05D005077 ORTHO05D006889 3.7e-241 838.6 752 59.2
BraA03t12537Z Brassica rapa HOM05D005077 ORTHO05D006889 6.3e-241 837.8 755 59.1
AT3G04480 Arabidopsis thaliana HOM05D005077 ORTHO05D006889 1.8e-240 836.3 747 58.8
PSO210G4243 Papaver somniferum HOM05D005077 ORTHO05D006889 1.8e-240 836.3 750 58.4
Aa31LG5G14920 Aethionema arabicum HOM05D005077 ORTHO05D006889 5.4e-240 834.7 767 58.7
AL3G14430 Arabidopsis lyrata HOM05D005077 ORTHO05D006889 5.4e-240 834.7 746 59.1
PSO832G3809 Papaver somniferum HOM05D005077 ORTHO05D006889 5.4e-240 834.7 750 58.4
FAN14G3018 Fragaria x ananassa HOM05D005077 ORTHO05D006889 2.0e-239 832.8 780 58.1
ECA238G3062 Erigeron canadensis HOM05D005077 ORTHO05D006889 2.7e-239 832.4 741 57.8
FAN09G0372 Fragaria x ananassa HOM05D005077 ORTHO05D006889 5.9e-239 831.2 778 58.2
MBI10_g13801_MAGBIO Magnolia biondii HOM05D005077 ORTHO05D006889 7.7e-239 830.9 727 59.1
Rhsim05G0172000 Rhododendron simsii HOM05D005077 ORTHO05D006889 7.7e-239 830.9 768 57.6
BolC5t34930H Brassica oleracea HOM05D005077 ORTHO05D006889 1.0e-238 830.5 745 58.1
Aqoxy5G00195 Aquilegia oxysepala HOM05D005077 ORTHO05D006889 1.3e-238 830.1 747 58.6
A03p33620 Brassica napus HOM05D005077 ORTHO05D006889 2.9e-238 828.9 756 59.0
Migut.F00798 Erythranthe guttata HOM05D005077 ORTHO05D006889 2.9e-238 828.9 753 58.4
BcaC05g30222 Brassica carinata HOM05D005077 ORTHO05D006889 8.6e-238 827.4 747 58.0
FAN14G2113 Fragaria x ananassa HOM05D005077 ORTHO05D006889 1.1e-237 827.0 781 58.3
MSTRG.27374 Avicennia marina HOM05D005077 ORTHO05D006889 4.2e-237 825.1 748 57.9
BolC3t16351H Brassica oleracea HOM05D005077 ORTHO05D006889 4.2e-237 825.1 755 58.7
C05p62770 Brassica napus HOM05D005077 ORTHO05D006889 5.5e-237 824.7 745 57.9
CSS0033596 Camellia sinensis var. sinensis HOM05D005077 ORTHO05D006889 5.5e-237 824.7 675 63.0
Nn1g02888 Nelumbo nucifera HOM05D005077 ORTHO05D006889 5.5e-237 824.7 672 63.5
Atru.chr2.993 Acer truncatum HOM05D005077 ORTHO05D006889 1.6e-236 823.2 606 69.0
Ciclev10019185m.g Citrus clementina HOM05D005077 ORTHO05D006889 6.1e-236 821.2 668 63.6
QL07p018541 Quercus lobata HOM05D005077 ORTHO05D006889 6.1e-236 821.2 660 63.6
Sabra19G0032000 Salix brachista HOM05D005077 ORTHO05D006889 8.0e-236 820.8 828 53.9
ATR0736G030 Amborella trichopoda HOM05D005077 ORTHO05D006889 1.0e-235 820.5 742 56.9
BcaC01g04375 Brassica carinata HOM05D005077 ORTHO05D006889 4.0e-235 818.5 755 58.0
C03p40820 Brassica napus HOM05D005077 ORTHO05D006889 4.0e-235 818.5 755 58.0
Carub.0003s0364 Capsella rubella HOM05D005077 ORTHO05D006889 4.0e-235 818.5 748 57.4
BraA05t23044Z Brassica rapa HOM05D005077 ORTHO05D006889 1.5e-234 816.6 750 57.6
A05p43000 Brassica napus HOM05D005077 ORTHO05D006889 4.4e-234 815.1 746 57.5
Nitab4.5_0006737g0070 Nicotiana tabacum HOM05D005077 ORTHO05D006889 2.2e-233 812.8 767 56.2
Lj2A44T74 Lonicera japonica HOM05D005077 ORTHO05D006889 4.9e-233 811.6 800 55.0
arahy.Tifrunner.gnm1.ann1.2V8KIQ Arachis hypogaea HOM05D005077 ORTHO05D006889 1.2e-231 807.0 744 57.9
EL10Ac9g21459 Beta vulgaris HOM05D005077 ORTHO05D006889 2.7e-231 805.8 746 55.4
Lsat_1_v5_gn_2_108321 Lactuca sativa HOM05D005077 ORTHO05D006889 4.3e-229 798.5 741 56.4
BcaC05g29939 Brassica carinata HOM05D005077 ORTHO05D006889 5.6e-229 798.1 748 56.8
Gohir.A11G246900 Gossypium hirsutum HOM05D005077 ORTHO05D006889 1.5e-226 790.0 668 60.3
vmacro19987 Vaccinium macrocarpon HOM05D005077 ORTHO05D006889 1.0e-222 777.3 810 52.2
Hund06905 Selenicereus undatus HOM05D005077 ORTHO05D006889 1.2e-220 770.4 767 54.6
Os02g0810450 Oryza sativa ssp. japonica HOM05D005077 ORTHO05D006889 1.2e-215 753.8 754 55.2
HPP92_014753 Vanilla planifolia HOM05D005077 ORTHO05D006889 2.1e-215 753.1 742 53.6
Lalb_Chr22g0358841 Lupinus albus HOM05D005077 ORTHO05D006889 1.7e-214 750.0 672 58.6
Sabra13G0043400 Salix brachista HOM05D005077 ORTHO05D006889 3.0e-214 749.2 737 54.1
DCAR_003547 Daucus carota HOM05D005077 ORTHO05D006889 9.5e-213 744.2 758 54.9
AUR62013106 Chenopodium quinoa HOM05D005077 ORTHO05D006889 2.1e-212 743.0 762 52.4
CsaV3_2G009810 Cucumis sativus L. HOM05D005077 ORTHO05D006889 6.2e-212 741.5 666 59.0
arahy.Tifrunner.gnm1.ann1.FVV1VG Arachis hypogaea HOM05D005077 ORTHO05D006889 1.1e-208 730.7 762 52.8
BcaC05g30195 Brassica carinata HOM05D005077 ORTHO05D006889 7.1e-208 728.0 741 53.2
Peaxi162Scf00528g00225 Petunia axillaris HOM05D005077 ORTHO05D006889 1.0e-206 724.2 742 52.7
SGA_v2.0_scaffold1G00651 Striga asiatica HOM05D005077 ORTHO05D006889 1.4e-203 713.8 815 49.9
Cc02_g08770 Coffea canephora HOM05D005077 ORTHO05D006889 3.1e-203 712.6 665 56.8
arahy.Tifrunner.gnm1.ann1.2UET99 Arachis hypogaea HOM05D005077 ORTHO05D006889 2.6e-202 709.5 739 52.9
Dinv35947 Davidia involucrata HOM05D005077 ORTHO05D006889 1.2e-199 700.7 569 65.6
arahy.Tifrunner.gnm1.ann1.BW8NI8 Arachis hypogaea HOM05D005077 ORTHO05D006889 1.9e-197 693.3 737 52.0
CDE07G0212 Ceratophyllum demersum HOM05D005077 ORTHO05D006889 1.2e-191 674.1 741 50.1
Nitab4.5_0003780g0090 Nicotiana tabacum HOM05D005077 ORTHO05D006889 3.9e-190 669.1 739 50.5
Hma1.2p1_0114F.1_g055300 Hydrangea macrophylla HOM05D005077 ORTHO05D006889 7.9e-183 644.8 618 56.0
Haze_04419 Corylus avellana HOM05D005077 ORTHO05D006889 2.5e-181 639.8 920 42.0
CAN.G786.40 Capsicum annuum HOM05D005077 ORTHO05D006889 6.2e-180 635.2 606 55.8
unitig_748.g6990 Utricularia gibba HOM05D005077 ORTHO05D006889 1.1e-171 607.8 747 47.4
AagrBONN_evm.TU.Sc2ySwM_362.1555 Anthoceros agrestis HOM05D005077 ORTHO05D006889 1.1e-168 597.8 792 46.2
arahy.Tifrunner.gnm1.ann1.CACA61 Arachis hypogaea HOM05D005077 ORTHO05D006889 3.7e-164 582.8 748 46.9
Pp3c11_830 Physcomitrium patens HOM05D005077 ORTHO05D006889 2.6e-162 576.6 763 44.6
Zm00001eb258450 Zea mays HOM05D005077 ORTHO05D006889 6.9e-155 552.0 639 50.2
CBR_g3613 Chara braunii HOM05D005077 ORTHO05D006889 4.2e-152 542.7 629 48.3
Mapoly0027s0145 Marchantia polymorpha HOM05D005077 ORTHO05D006889 7.2e-152 542.0 622 48.7
SMO348G0068 Selaginella moellendorffii HOM05D005077 ORTHO05D006889 4.4e-149 532.7 551 52.5
Sp3g03330 Schrenkiella parvula HOM05D005077 ORTHO05D006889 2.2e-148 530.4 566 51.1
Oeu041238.1 Olea europaea HOM05D005077 ORTHO05D006889 4.7e-143 512.7 656 47.3
SEGI_09343 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 1.2e-127 461.5 393 58.8
AUR62010111 Chenopodium quinoa HOM05D005077 ORTHO05D006889 6.2e-95 352.8 400 47.2
MCO10G045 Micromonas commoda HOM05D005077 ORTHO05D006889 4.4e-85 320.1 623 35.2
PGSC0003DMG400019115 Solanum tuberosum HOM05D005077 ORTHO05D006889 6.0e-82 309.7 345 51.0
PRCOL_00005667 Prasinoderma coloniale HOM05D005077 ORTHO05D006889 1.7e-76 291.6 539 36.5
Cre01.g033091 Chlamydomonas reinhardtii HOM05D005077 ORTHO05D006889 1.1e-75 288.9 699 31.3
SEGI_01626 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 3.4e-61 240.7 374 39.6
SEGI_03702 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 1.8e-54 218.4 227 48.9
SEGI_18706 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 1.8e-54 218.4 227 48.9
SHI22754 Sapria himalayana HOM05D005077 ORTHO05D006889 5.1e-49 200.3 187 61.0
Cfa026934 Carpinus fangiana HOM05D005077 ORTHO05D006889 4.3e-48 197.2 543 30.0
Duzib106G1915 Durio zibethinus HOM05D005077 ORTHO05D006889 6.1e-42 176.8 150 59.3
FAN05G3606 Fragaria x ananassa HOM05D005077 ORTHO05D019498 9.7e-40 169.5 189 49.2
FAN05G0362 Fragaria x ananassa HOM05D005077 ORTHO05D006889 1.1e-38 166.0 146 59.6
BcaC01g04372 Brassica carinata HOM05D003677 ORTHO05D004231 2.2e-36 158.3 102 76.5
Lalb_Chr22g0358851 Lupinus albus HOM05D005077 ORTHO05D006889 2.7e-34 151.4 77 89.6
QL07p018546 Quercus lobata HOM05D005077 ORTHO05D006889 2.3e-33 148.3 77 87.0
Cc02_g08780 Coffea canephora HOM05D005077 ORTHO05D006889 6.7e-33 146.7 77 88.3
C08p13010 Brassica napus HOM05D005077 ORTHO05D006889 3.1e-22 111.3 56 91.1
arahy.Tifrunner.gnm1.ann1.TVQ2CS Arachis hypogaea HOM05D005077 ORTHO05D006889 2.1e-18 98.6 61 77.0
PGSC0003DMG400019116 Solanum tuberosum HOM05D005077 ORTHO05D018175 5.7e-16 90.5 105 41.0
BcaC05g29940 Brassica carinata HOM05D005077 ORTHO05D018175 2.2e-15 88.6 191 37.2
EL10Ac5g11645 Beta vulgaris HOM05D005077 ORTHO05D006889 5.4e-14 84.0 50 70.0
Peaxi162Scf00528g00025 Petunia axillaris HOM05D000011 ORTHO05D015719 1.2e-13 82.8 92 47.8
Atru.chr2.994 Acer truncatum HOM05D005077 ORTHO05D018175 1.6e-13 82.4 65 58.5
CSS0009313 Camellia sinensis var. sinensis HOM05D005077 ORTHO05D018175 9.4e-11 73.2 78 47.4
Hund05190 Selenicereus undatus HOM05D005077 ORTHO05D006889 6.8e-09 67.0 56 58.9
CSS0021399 Camellia sinensis var. sinensis HOM05D005077 ORTHO05D018175 3.4e-08 64.7 67 49.3
CSS0037989 Camellia sinensis var. sinensis HOM05D005077 ORTHO05D018175 5.7e-08 63.9 67 50.7


User provided reference genes

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