Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B02057 Eucalyptus grandis HOM05D001245 ORTHO05D004475 3.4e-59 231.5 118 100.0
Eucgr.F03841 Eucalyptus grandis HOM05D001245 ORTHO05D004475 4.6e-40 167.9 106 83.0
Eucgr.B02095 Eucalyptus grandis HOM05D001245 ORTHO05D004475 8.1e-29 130.6 114 66.7
PGR042G0290 Punica granatum HOM05D001245 ORTHO05D004475 3.9e-15 85.1 101 46.5
Dinv14685 Davidia involucrata HOM05D001245 ORTHO05D004475 4.3e-14 81.6 98 42.9
TWI34G1866 Tripterygium wilfordii HOM05D001245 ORTHO05D004475 2.1e-13 79.3 80 51.2
CSS0013013 Camellia sinensis var. sinensis HOM05D001245 ORTHO05D004475 2.8e-13 79.0 89 46.1
CSS0038833 Camellia sinensis var. sinensis HOM05D001245 ORTHO05D004475 2.8e-13 79.0 89 46.1
Thecc.08G132800 Theobroma cacao HOM05D001245 ORTHO05D004475 4.8e-13 78.2 99 42.4
vmacro10605 Vaccinium macrocarpon HOM05D001245 ORTHO05D004475 6.2e-13 77.8 89 44.9
Rhsim11G0071500 Rhododendron simsii HOM05D001245 ORTHO05D004475 2.4e-12 75.9 89 44.9
Actinidia03424 Actinidia chinensis HOM05D001245 ORTHO05D004475 6.9e-12 74.3 89 43.8
Ciclev10000159m.g Citrus clementina HOM05D001245 ORTHO05D004475 6.9e-12 74.3 98 39.8
Atru.chr13.1560 Acer truncatum HOM05D001245 ORTHO05D004475 9.0e-12 73.9 97 39.2
COL.COLO4_08845 Corchorus olitorius HOM05D001245 ORTHO05D004475 1.5e-11 73.2 88 44.3
Lj4C682G10 Lonicera japonica HOM05D001245 ORTHO05D004475 2.0e-11 72.8 85 44.7
Sabra05G0138300 Salix brachista HOM05D001245 ORTHO05D004475 2.0e-11 72.8 98 41.8
Duzib093G0162 Durio zibethinus HOM05D001245 ORTHO05D004475 3.4e-11 72.0 99 40.4
QL09p032547 Quercus lobata HOM05D001245 ORTHO05D004475 5.8e-11 71.2 96 43.8
Potri.005G182500 Populus trichocarpa HOM05D001245 ORTHO05D004475 9.9e-11 70.5 100 38.0
Prupe.1G489800 Prunus persica HOM05D001245 ORTHO05D004475 1.3e-10 70.1 86 40.7
Hma1.2p1_0014F.1_g010210 Hydrangea macrophylla HOM05D001245 ORTHO05D004475 1.7e-10 69.7 84 44.0
Cpa.g.sc64.150 Carica papaya HOM05D001245 ORTHO05D004475 2.4e-09 65.9 91 44.0
CiPaw.16G022900 Carya illinoinensis HOM05D001245 ORTHO05D004475 4.2e-09 65.1 96 37.5
Sed0010713 Sechium edule HOM05D001245 ORTHO05D004475 4.2e-09 65.1 91 39.6
TAR229G0002 Trochodendron aralioides HOM05D001245 ORTHO05D004475 4.2e-09 65.1 63 52.4
SHI09212 Sapria himalayana HOM05D000105 ORTHO05D000023 5.5e-09 64.7 90 41.1
Cfa018127 Carpinus fangiana HOM05D001245 ORTHO05D004475 1.2e-08 63.5 96 37.5
Gorai.013G107700 Gossypium raimondii HOM05D001245 ORTHO05D004475 2.1e-08 62.8 99 35.4
Aqoxy6G00310 Aquilegia oxysepala HOM05D001245 ORTHO05D004475 3.5e-08 62.0 61 47.5
Nn1g08963 Nelumbo nucifera HOM05D001245 ORTHO05D004475 4.6e-08 61.6 89 37.1
Gohir.D03G069003 Gossypium hirsutum HOM05D001245 ORTHO05D004475 6.0e-08 61.2 99 34.3
MD08G1159000 Malus domestica HOM05D001245 ORTHO05D004475 6.0e-08 61.2 87 37.9
DCAR_003586 Daucus carota HOM05D001245 ORTHO05D005230 1.0e-07 60.5 81 38.3
MBI06_g35213_MAGBIO Magnolia biondii HOM05D001245 ORTHO05D004475 1.0e-07 60.5 113 37.2
Glyma.16G005600 Glycine max HOM05D001245 ORTHO05D004475 1.8e-07 59.7 97 39.2
Gohir.A02G110400 Gossypium hirsutum HOM05D001245 ORTHO05D004475 2.3e-07 59.3 99 34.3
Lalb_Chr17g0343591 Lupinus albus HOM05D001245 ORTHO05D004475 2.3e-07 59.3 89 38.2
Manes.02G168200 Manihot esculenta HOM05D001245 ORTHO05D004475 2.3e-07 59.3 90 36.7
RcHm_v2.0_Chr6g0296681 Rosa chinensis HOM05D001245 ORTHO05D004475 3.9e-07 58.5 86 37.2
Sc26g0002950 Simmondsia chinensis HOM05D001245 ORTHO05D004475 3.9e-07 58.5 98 32.7
Psat6g040520 Pisum sativum HOM05D001245 ORTHO05D004475 6.7e-07 57.8 91 37.4
HanXRQChr02g0040561 Helianthus annuus HOM05D001245 ORTHO05D004475 8.7e-07 57.4 103 35.9
FvH4_2g27821 Fragaria vesca HOM05D001245 ORTHO05D004475 1.5e-06 56.6 86 37.2
FAN15G0291 Fragaria x ananassa HOM05D001245 ORTHO05D005230 3.3e-06 55.5 86 36.0
arahy.Tifrunner.gnm1.ann1.69Q1HU Arachis hypogaea HOM05D001245 ORTHO05D004475 4.3e-06 55.1 103 35.0
Medtr1g029630 Medicago truncatula HOM05D001245 ORTHO05D004475 5.6e-06 54.7 99 32.3
FAN20G0097 Fragaria x ananassa HOM05D001245 ORTHO05D004475 7.4e-06 54.3 81 40.7
FAN24G2504 Fragaria x ananassa HOM05D001245 ORTHO05D005230 7.4e-06 54.3 86 36.0


User provided reference genes

Program Settings