Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B02051 Eucalyptus grandis HOM05D007755 ORTHO05D009866 2.3e-28 128.3 68 100.0
RcHm_v2.0_Chr3g0491831 Rosa chinensis HOM05D007755 ORTHO05D009866 1.9e-22 108.6 68 85.3
RcHm_v2.0_CPg0502301 Rosa chinensis HOM05D007755 ORTHO05D009866 1.9e-22 108.6 68 85.3
MD11G1068400 Malus domestica HOM05D007755 ORTHO05D009866 2.5e-22 108.2 68 85.3
Gohir.1Z049880 Gossypium hirsutum HOM05D007755 ORTHO05D009866 4.2e-22 107.5 68 83.8
AL2G20820 Arabidopsis lyrata HOM05D007755 ORTHO05D009866 2.1e-21 105.1 68 82.4
CARHR281980 Cardamine hirsuta HOM05D007755 ORTHO05D009866 2.7e-21 104.8 68 82.4
Nn020s41507 Nelumbo nucifera HOM05D007755 ORTHO05D009866 2.7e-21 104.8 68 82.4
Nn082s42679 Nelumbo nucifera HOM05D007755 ORTHO05D009866 2.7e-21 104.8 68 82.4
Nn287s46147 Nelumbo nucifera HOM05D007755 ORTHO05D009866 2.7e-21 104.8 68 82.4
Os12g0504050 Oryza sativa ssp. japonica HOM05D007755 ORTHO05D009866 1.4e-20 102.4 67 79.1
CAN.G679.8 Capsicum annuum HOM05D007755 ORTHO05D009866 4.4e-19 97.4 63 84.1
Solyc01g102770.1 Solanum lycopersicum HOM05D007755 ORTHO05D009866 4.4e-19 97.4 63 84.1
Gohir.A05G086100 Gossypium hirsutum HOM05D007755 ORTHO05D009866 9.7e-19 96.3 63 82.5
PGR111G0111 Punica granatum HOM05D007755 ORTHO05D009866 1.3e-18 95.9 63 84.1
LjContig00489g0017505 Lotus japonicus HOM05D007755 ORTHO05D009866 1.7e-18 95.5 63 84.1
Potri.013G142548 Populus trichocarpa HOM05D007755 ORTHO05D009866 2.8e-18 94.7 63 82.5
Prupe.2G104500 Prunus persica HOM05D007755 ORTHO05D009866 2.8e-18 94.7 63 82.5
Nn3g19094 Nelumbo nucifera HOM05D007755 ORTHO05D009866 3.7e-18 94.4 63 82.5
AL2G21330 Arabidopsis lyrata HOM05D007755 ORTHO05D009866 4.8e-18 94.0 63 82.5
ATCG00300 Arabidopsis thaliana HOM05D007755 ORTHO05D009866 4.8e-18 94.0 63 82.5
A06p23320 Brassica napus HOM05D007755 ORTHO05D009866 4.8e-18 94.0 63 82.5
BNapus_Darmor_BZH_scaffold_287p00020 Brassica napus HOM05D007755 ORTHO05D009866 4.8e-18 94.0 63 82.5
C09p40450 Brassica napus HOM05D007755 ORTHO05D009866 4.8e-18 94.0 63 82.5
BolC7t41728H Brassica oleracea HOM05D007755 ORTHO05D009866 4.8e-18 94.0 63 82.5
BolC9t56908H Brassica oleracea HOM05D007755 ORTHO05D009866 4.8e-18 94.0 63 82.5
BolSC29t60454H Brassica oleracea HOM05D007755 ORTHO05D009866 4.8e-18 94.0 63 82.5
BolSC45t60871H Brassica oleracea HOM05D007755 ORTHO05D009866 4.8e-18 94.0 63 82.5
BolSC47t61109H Brassica oleracea HOM05D007755 ORTHO05D009866 4.8e-18 94.0 63 82.5
BolSC47t61113H Brassica oleracea HOM05D007755 ORTHO05D009866 4.8e-18 94.0 63 82.5
BraA06t25434Z Brassica rapa HOM05D007755 ORTHO05D009866 4.8e-18 94.0 63 82.5
BraSC140t45582Z Brassica rapa HOM05D007755 ORTHO05D009866 4.8e-18 94.0 63 82.5
CAN.G201.1 Capsicum annuum HOM05D007755 ORTHO05D009866 4.8e-18 94.0 63 82.5
Migut.J01358 Erythranthe guttata HOM05D007755 ORTHO05D009866 6.3e-18 93.6 63 81.0
HanXRQChr00c0272g0573011 Helianthus annuus HOM05D007755 ORTHO05D009866 6.3e-18 93.6 63 81.0
HanXRQChr00c0300g0573261 Helianthus annuus HOM05D007755 ORTHO05D009866 6.3e-18 93.6 63 81.0
HanXRQChr00c0313g0573411 Helianthus annuus HOM05D007755 ORTHO05D009866 6.3e-18 93.6 63 81.0
HanXRQChr00c0920g0577881 Helianthus annuus HOM05D007755 ORTHO05D009866 6.3e-18 93.6 63 81.0
HanXRQChr02g0041661 Helianthus annuus HOM05D007755 ORTHO05D009866 6.3e-18 93.6 63 81.0
HanXRQChr02g0044811 Helianthus annuus HOM05D007755 ORTHO05D009866 6.3e-18 93.6 63 81.0
HanXRQChr04g0099331 Helianthus annuus HOM05D007755 ORTHO05D009866 6.3e-18 93.6 63 81.0
HanXRQChr07g0201081 Helianthus annuus HOM05D007755 ORTHO05D009866 6.3e-18 93.6 63 81.0
HanXRQChr08g0210241 Helianthus annuus HOM05D007755 ORTHO05D009866 6.3e-18 93.6 63 81.0
HanXRQChr10g0282461 Helianthus annuus HOM05D007755 ORTHO05D009866 6.3e-18 93.6 63 81.0
HanXRQChr11g0326681 Helianthus annuus HOM05D007755 ORTHO05D009866 6.3e-18 93.6 63 81.0
HanXRQCPg0579881 Helianthus annuus HOM05D007755 ORTHO05D009866 6.3e-18 93.6 63 81.0
LjContig00318g0015447 Lotus japonicus HOM05D007755 ORTHO05D009866 6.3e-18 93.6 63 82.5
DCAR_032481 Daucus carota HOM05D007755 ORTHO05D009866 8.3e-18 93.2 63 81.0
Gohir.D06G164048 Gossypium hirsutum HOM05D007755 ORTHO05D009866 8.3e-18 93.2 63 81.0
Gohir.D08G128420 Gossypium hirsutum HOM05D007755 ORTHO05D009866 8.3e-18 93.2 63 81.0
Medtr8g056780 Medicago truncatula HOM05D007755 ORTHO05D009866 1.1e-17 92.8 63 81.0
Sed0002727 Sechium edule HOM05D007755 ORTHO05D009866 1.1e-17 92.8 63 81.0
Sed0008331 Sechium edule HOM05D007755 ORTHO05D009866 1.1e-17 92.8 63 81.0
Sed0012017 Sechium edule HOM05D007755 ORTHO05D009866 1.1e-17 92.8 63 81.0
Sed0014140 Sechium edule HOM05D007755 ORTHO05D009866 1.1e-17 92.8 63 81.0
Sed0021343 Sechium edule HOM05D007755 ORTHO05D009866 1.1e-17 92.8 63 81.0
Sed0024615 Sechium edule HOM05D007755 ORTHO05D009866 1.1e-17 92.8 63 81.0
Solyc11g050770.1 Solanum lycopersicum HOM05D007755 ORTHO05D009866 1.1e-17 92.8 62 79.0
Gohir.A12G076900 Gossypium hirsutum HOM05D007755 ORTHO05D009866 1.4e-17 92.4 63 81.0
HanXRQChr05g0151401 Helianthus annuus HOM05D007755 ORTHO05D009866 1.8e-17 92.0 63 79.4
Solyc10g017950.2 Solanum lycopersicum HOM05D007755 ORTHO05D009866 1.8e-17 92.0 62 79.0
Migut.D01347 Erythranthe guttata HOM05D007755 ORTHO05D009866 2.4e-17 91.7 59 84.7
Glyma.01G095900 Glycine max HOM05D007755 ORTHO05D009866 3.1e-17 91.3 63 79.4
PSO548G0042 Papaver somniferum HOM05D007755 ORTHO05D009866 5.3e-17 90.5 63 81.0
Gohir.A01G164800 Gossypium hirsutum HOM05D007755 ORTHO05D009866 7.0e-17 90.1 63 77.8
Gohir.A12G121501 Gossypium hirsutum HOM05D007755 ORTHO05D009866 1.2e-16 89.4 63 77.8
Glyma.08G363500 Glycine max HOM05D007755 ORTHO05D009866 1.6e-16 89.0 61 77.0
BraSC179t45795Z Brassica rapa HOM05D007755 ORTHO05D009866 2.0e-16 88.6 63 79.4
Gorai.003G070800 Gossypium raimondii HOM05D007755 ORTHO05D009866 2.0e-16 88.6 63 76.2
HanXRQChr11g0330571 Helianthus annuus HOM05D007755 ORTHO05D009866 4.5e-16 87.4 63 77.8
Phvul.010G069000 Phaseolus vulgaris HOM05D007755 ORTHO05D009866 5.9e-16 87.0 63 73.0
Hma1.2p1_0149F.1_g066480 Hydrangea macrophylla HOM05D007755 ORTHO05D009866 7.7e-16 86.7 63 73.0
BolSC44t60853H Brassica oleracea HOM05D007755 ORTHO05D009866 6.5e-15 83.6 59 76.3
BolSC49t61194H Brassica oleracea HOM05D007755 ORTHO05D009866 6.5e-15 83.6 59 76.3
Migut.M00584 Erythranthe guttata HOM05D007755 ORTHO05D009866 3.2e-14 81.3 56 76.8
Thhalv10011069m.g Eutrema salsugineum HOM05D007755 ORTHO05D009866 2.1e-13 78.6 54 77.8
Lsat_1_v5_gn_8_5961 Lactuca sativa HOM05D007755 ORTHO05D009866 2.1e-13 78.6 68 67.6
EL10As15g24140 Beta vulgaris HOM05D000890 ORTHO05D009866 4.7e-13 77.4 59 74.6
Nn2g13213 Nelumbo nucifera HOM05D007755 ORTHO05D009866 2.6e-11 71.6 47 78.7
CSS0030059 Camellia sinensis var. sinensis HOM05D007755 ORTHO05D009866 2.4e-09 65.1 68 58.8
BraSC143t45685Z Brassica rapa HOM05D007755 ORTHO05D009866 3.1e-09 64.7 47 74.5
AL2G25590 Arabidopsis lyrata HOM05D007755 ORTHO05D009866 2.7e-08 61.6 57 61.4
CSS0044859 Camellia sinensis var. sinensis HOM05D007755 ORTHO05D009866 5.9e-08 60.5 45 75.6
CsaV3_5G013710 Cucumis sativus L. HOM05D007755 ORTHO05D009866 7.7e-08 60.1 41 78.0
MD00G1208700 Malus domestica HOM05D007755 ORTHO05D009866 1.3e-07 59.3 49 67.3
SMO086G0034 Selaginella moellendorffii HOM05D007755 ORTHO05D009866 6.6e-07 57.0 61 57.4
Eucgr.F03556 Eucalyptus grandis HOM05D007755 ORTHO05D035211 4.2e-06 54.3 35 88.6


User provided reference genes

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