Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B01969 Eucalyptus grandis HOM05D006315 ORTHO05D008052 9.6e-195 683.3 348 100.0
PGR083G2010 Punica granatum HOM05D006315 ORTHO05D008052 9.7e-139 497.3 354 75.1
GSVIVG01000051001 Vitis vinifera HOM05D006315 ORTHO05D008052 2.2e-135 486.1 352 73.9
QL03p006996 Quercus lobata HOM05D006315 ORTHO05D008052 7.2e-134 481.1 351 73.8
RhsimUnG0225800 Rhododendron simsii HOM05D006315 ORTHO05D008052 2.7e-133 479.2 360 70.8
CiPaw.07G017800 Carya illinoinensis HOM05D006315 ORTHO05D008052 1.5e-131 473.4 354 72.0
Actinidia05703 Actinidia chinensis HOM05D006315 ORTHO05D008052 1.3e-130 470.3 351 71.5
CSS0039769 Camellia sinensis var. sinensis HOM05D006315 ORTHO05D008052 1.3e-130 470.3 354 70.6
Nn6g32180 Nelumbo nucifera HOM05D006315 ORTHO05D008052 2.2e-130 469.5 349 71.1
Cfa006589 Carpinus fangiana HOM05D006315 ORTHO05D008052 4.8e-130 468.4 352 71.3
Thecc.05G303200 Theobroma cacao HOM05D006315 ORTHO05D008052 6.3e-130 468.0 349 68.8
Ciclev10001688m.g Citrus clementina HOM05D006315 ORTHO05D008052 1.4e-129 466.8 354 69.5
RcHm_v2.0_Chr3g0454751 Rosa chinensis HOM05D006315 ORTHO05D008052 2.4e-129 466.1 353 69.1
Prupe.6G325900 Prunus persica HOM05D006315 ORTHO05D008052 4.1e-129 465.3 355 69.0
Lsat_1_v5_gn_9_86000 Lactuca sativa HOM05D006315 ORTHO05D008052 5.3e-129 464.9 294 78.9
TAR381G0108 Trochodendron aralioides HOM05D006315 ORTHO05D008052 2.0e-128 463.0 363 68.3
Manes.09G167100 Manihot esculenta HOM05D006315 ORTHO05D008052 3.5e-128 462.2 354 70.6
Dinv40287 Davidia involucrata HOM05D006315 ORTHO05D008052 7.7e-128 461.1 350 70.6
Duzib128G1131 Durio zibethinus HOM05D006315 ORTHO05D008052 1.0e-127 460.7 350 68.9
COL.COLO4_13471 Corchorus olitorius HOM05D006315 ORTHO05D008052 2.2e-127 459.5 314 74.2
vmacro05019 Vaccinium macrocarpon HOM05D006315 ORTHO05D008052 2.9e-127 459.1 259 86.1
Aa31LG11G9300 Aethionema arabicum HOM05D006315 ORTHO05D008052 8.5e-127 457.6 351 69.5
Gohir.D11G275200 Gossypium hirsutum HOM05D006315 ORTHO05D008052 1.5e-126 456.8 294 77.2
Gorai.007G297000 Gossypium raimondii HOM05D006315 ORTHO05D008052 1.5e-126 456.8 294 77.2
FAN09G2245 Fragaria x ananassa HOM05D006315 ORTHO05D008052 1.9e-126 456.4 353 68.0
AUR62000828 Chenopodium quinoa HOM05D006315 ORTHO05D008052 2.5e-126 456.1 294 77.2
ECA236G1566 Erigeron canadensis HOM05D006315 ORTHO05D008052 2.5e-126 456.1 262 82.8
Potri.013G020800 Populus trichocarpa HOM05D006315 ORTHO05D008052 2.5e-126 456.1 355 69.3
Sabra13G0023200 Salix brachista HOM05D006315 ORTHO05D008052 2.5e-126 456.1 355 68.2
Cpa.g.sc48.53 Carica papaya HOM05D006315 ORTHO05D008052 4.2e-126 455.3 350 70.6
FvH4_6g05840 Fragaria vesca HOM05D006315 ORTHO05D008052 4.2e-126 455.3 355 68.2
HanXRQChr02g0046151 Helianthus annuus HOM05D006315 ORTHO05D008052 5.5e-126 454.9 324 70.7
TWI36G1375 Tripterygium wilfordii HOM05D006315 ORTHO05D008052 7.2e-126 454.5 352 66.8
FAN02G1008 Fragaria x ananassa HOM05D006315 ORTHO05D008052 9.4e-126 454.1 353 68.3
Thhalv10004542m.g Eutrema salsugineum HOM05D006315 ORTHO05D008052 4.7e-125 451.8 348 67.8
Aqoxy6G00442 Aquilegia oxysepala HOM05D006315 ORTHO05D008052 8.0e-125 451.1 352 67.9
Sp2g20750 Schrenkiella parvula HOM05D006315 ORTHO05D008052 8.0e-125 451.1 349 67.6
AL6G39450 Arabidopsis lyrata HOM05D006315 ORTHO05D008052 1.0e-124 450.7 346 68.2
FAN05G4943 Fragaria x ananassa HOM05D006315 ORTHO05D008052 1.0e-124 450.7 353 68.3
Sc06g0003310 Simmondsia chinensis HOM05D006315 ORTHO05D008052 2.3e-124 449.5 356 69.7
CARHR186120 Cardamine hirsuta HOM05D006315 ORTHO05D008052 3.0e-124 449.1 346 67.9
THA.LOC104818698 Tarenaya hassleriana HOM05D006315 ORTHO05D008052 3.0e-124 449.1 353 68.0
FAN14G1304 Fragaria x ananassa HOM05D006315 ORTHO05D008052 5.2e-124 448.4 362 66.9
Cc02_g33440 Coffea canephora HOM05D006315 ORTHO05D008052 8.8e-124 447.6 352 67.6
FAN14G3373 Fragaria x ananassa HOM05D006315 ORTHO05D008052 8.8e-124 447.6 360 67.2
Carub.0006s2500 Capsella rubella HOM05D006315 ORTHO05D008052 1.5e-123 446.8 336 68.8
PGSC0003DMG400018995 Solanum tuberosum HOM05D006315 ORTHO05D008052 1.5e-123 446.8 347 66.9
PSO675G8687 Papaver somniferum HOM05D006315 ORTHO05D008052 2.6e-123 446.0 360 66.7
Sopen01g042560 Solanum pennellii HOM05D006315 ORTHO05D008052 3.4e-123 445.7 348 67.0
MD12G1219300 Malus domestica HOM05D006315 ORTHO05D008052 4.4e-123 445.3 351 66.4
SalBow8G0023 Salvia bowleyana HOM05D006315 ORTHO05D008052 2.8e-122 442.6 300 75.7
A09p05350 Brassica napus HOM05D006315 ORTHO05D008052 3.7e-122 442.2 335 69.3
BraA09t36173Z Brassica rapa HOM05D006315 ORTHO05D008052 3.7e-122 442.2 335 69.3
CAN.G1034.11 Capsicum annuum HOM05D006315 ORTHO05D008052 8.3e-122 441.0 348 66.7
Oeu020852.1 Olea europaea HOM05D006315 ORTHO05D008052 1.1e-121 440.7 349 67.9
C09p05830 Brassica napus HOM05D006315 ORTHO05D008052 2.4e-121 439.5 334 68.9
BolC9t53510H Brassica oleracea HOM05D006315 ORTHO05D008052 2.4e-121 439.5 334 68.9
Ah.06g189370 Amaranthus hybridus HOM05D006315 ORTHO05D008052 3.1e-121 439.1 285 75.8
ClCG02G015800 Citrullus lanatus HOM05D006315 ORTHO05D008052 9.1e-121 437.6 350 67.4
AUR62005146 Chenopodium quinoa HOM05D006315 ORTHO05D008052 1.6e-120 436.8 384 61.7
DCAR_022164 Daucus carota HOM05D006315 ORTHO05D008052 5.9e-120 434.9 296 73.3
FAN05G5779 Fragaria x ananassa HOM05D006315 ORTHO05D008052 7.7e-120 434.5 373 64.6
AT5G27560 Arabidopsis thaliana HOM05D006315 ORTHO05D008052 1.3e-119 433.7 349 65.9
ATR1120G073 Amborella trichopoda HOM05D006315 ORTHO05D008052 2.9e-119 432.6 258 81.4
MBI01_g44539_MAGBIO Magnolia biondii HOM05D006315 ORTHO05D008052 2.5e-118 429.5 255 83.1
Nitab4.5_0004395g0040 Nicotiana tabacum HOM05D006315 ORTHO05D008052 4.2e-118 428.7 349 65.9
arahy.Tifrunner.gnm1.ann1.9IE074 Arachis hypogaea HOM05D006315 ORTHO05D008052 7.2e-118 427.9 351 65.5
Peaxi162Scf00037g00325 Petunia axillaris HOM05D006315 ORTHO05D008052 7.2e-118 427.9 350 65.7
CsaV3_2G005300 Cucumis sativus L. HOM05D006315 ORTHO05D008052 9.4e-118 427.6 345 65.8
Lalb_Chr02g0148251 Lupinus albus HOM05D006315 ORTHO05D008052 1.4e-116 423.7 344 64.8
CDE06G2073 Ceratophyllum demersum HOM05D006315 ORTHO05D008052 2.3e-116 422.9 346 63.3
PSO541G4223 Papaver somniferum HOM05D006315 ORTHO05D008052 8.8e-116 421.0 336 66.1
Hund07070 Selenicereus undatus HOM05D006315 ORTHO05D008052 9.8e-115 417.5 297 72.4
MSTRG.16964 Avicennia marina HOM05D006315 ORTHO05D008052 2.8e-114 416.0 351 64.7
Ca_10111_v3 Cicer arietinum L. HOM05D006315 ORTHO05D008052 3.7e-114 415.6 306 68.3
Glyma.10G154300 Glycine max HOM05D006315 ORTHO05D008052 3.7e-114 415.6 349 63.3
Phvul.007G180000 Phaseolus vulgaris HOM05D006315 ORTHO05D008052 3.7e-114 415.6 348 64.4
unitig_37.g12631 Utricularia gibba HOM05D006315 ORTHO05D008052 5.4e-113 411.8 294 72.4
VMungo0720G2927 Vigna mungo HOM05D006315 ORTHO05D008052 9.2e-113 411.0 349 62.2
Medtr1g082900 Medicago truncatula HOM05D006315 ORTHO05D008052 5.9e-112 408.3 343 63.0
Migut.B01035 Erythranthe guttata HOM05D006315 ORTHO05D008052 1.7e-111 406.8 295 71.9
Glyma.20G234000 Glycine max HOM05D006315 ORTHO05D008052 2.3e-111 406.4 346 63.6
Psat6g151200 Pisum sativum HOM05D006315 ORTHO05D008052 2.3e-111 406.4 295 68.1
TPR.G6112 Trifolium pratense HOM05D006315 ORTHO05D008052 1.2e-109 400.6 339 61.4
Sed0013855 Sechium edule HOM05D006315 ORTHO05D008052 3.6e-109 399.1 351 63.0
Gohir.A11G265000 Gossypium hirsutum HOM05D006315 ORTHO05D008052 4.7e-109 398.7 229 82.5
MELO3C004257.2 Cucumis melo HOM05D006315 ORTHO05D008052 3.0e-108 396.0 311 65.9
Lj5g0002172 Lotus japonicus HOM05D006315 ORTHO05D008052 4.0e-108 395.6 299 65.9
Solyc01g098990.4 Solanum lycopersicum HOM05D006315 ORTHO05D008052 3.2e-105 386.0 350 60.6
SGA_v2.0_scaffold13G06358 Striga asiatica HOM05D006315 ORTHO05D008052 9.2e-105 384.4 258 74.8
Haze_04196 Corylus avellana HOM05D006315 ORTHO05D008052 1.4e-100 370.5 296 68.6
Atru.chr2.406 Acer truncatum HOM05D006315 ORTHO05D008052 5.2e-100 368.6 353 58.6
SEGI_29864 Sequoiadendron giganteum HOM05D006315 ORTHO05D008052 2.8e-93 346.3 259 64.5
EL10Ac4g09351 Beta vulgaris HOM05D006315 ORTHO05D008052 4.4e-91 339.0 266 67.3
arahy.Tifrunner.gnm1.ann1.SMKB8G Arachis hypogaea HOM05D006315 ORTHO05D008052 9.5e-86 321.2 358 55.0
Eucgr.B01970 Eucalyptus grandis HOM05D006315 ORTHO05D008052 2.2e-82 310.1 187 84.0
Lj5A533G15 Lonicera japonica HOM05D006315 ORTHO05D008052 4.6e-80 302.4 164 88.4
AagrBONN_evm.TU.Sc2ySwM_368.1535 Anthoceros agrestis HOM05D006315 ORTHO05D008052 1.0e-79 301.2 308 50.3
Zm00001eb377150 Zea mays HOM05D006315 ORTHO05D008052 1.1e-78 297.7 353 49.9
Eucgr.B01875 Eucalyptus grandis HOM05D006315 ORTHO05D008052 1.8e-76 290.4 144 97.9
Mapoly0046s0092 Marchantia polymorpha HOM05D006315 ORTHO05D008052 5.2e-76 288.9 326 48.5
Nitab4.5_0000137g0320 Nicotiana tabacum HOM05D006315 ORTHO05D008052 5.2e-76 288.9 173 78.6
Pp3c1_23410 Physcomitrium patens HOM05D006315 ORTHO05D008052 2.9e-66 256.5 313 44.1
SMO116G0320 Selaginella moellendorffii HOM05D006315 ORTHO05D008052 1.1e-60 238.0 224 50.4
Lj5C470G0 Lonicera japonica HOM05D006315 ORTHO05D008052 1.0e-55 221.5 126 84.9
Lj5C532G5 Lonicera japonica HOM05D006315 ORTHO05D008052 1.0e-55 221.5 126 84.9
Actinidia23634 Actinidia chinensis HOM05D006315 ORTHO05D008052 2.3e-55 220.3 132 83.3
HPP92_002820 Vanilla planifolia HOM05D006315 ORTHO05D008052 2.5e-54 216.9 228 56.6
HPP92_002878 Vanilla planifolia HOM05D006315 ORTHO05D008052 3.8e-50 203.0 132 75.8
Cre17.g739550 Chlamydomonas reinhardtii HOM05D006315 ORTHO05D008052 3.6e-40 169.9 372 32.5
Eucgr.B01874 Eucalyptus grandis HOM05D006315 ORTHO05D008052 2.2e-37 160.6 136 70.6
MCO15G525 Micromonas commoda HOM05D006315 ORTHO05D008052 3.1e-36 156.8 310 33.9
Hma1.2p1_0928F.1_g237790 Hydrangea macrophylla HOM05D006315 ORTHO05D008052 4.2e-33 146.4 158 57.6
PRCOL_00006277 Prasinoderma coloniale HOM05D006315 ORTHO05D008052 4.6e-32 142.9 247 35.6
EL10As4g23462 Beta vulgaris HOM05D006315 ORTHO05D008052 7.9e-32 142.1 107 70.1
Lj5P531T4 Lonicera japonica HOM05D006315 ORTHO05D008052 6.5e-26 122.5 83 71.1
Lj5A532G12 Lonicera japonica HOM05D006315 ORTHO05D008052 3.2e-25 120.2 201 42.3
Aa31LG11G9280 Aethionema arabicum HOM05D006315 ORTHO05D059511 2.0e-22 110.9 92 64.1
Lj5P469T8 Lonicera japonica HOM05D006315 ORTHO05D008052 5.7e-22 109.4 54 92.6
arahy.Tifrunner.gnm1.ann1.T3AGRQ Arachis hypogaea HOM05D006315 ORTHO05D008052 2.1e-16 90.9 55 74.5
Lj5A470G9 Lonicera japonica HOM05D006315 ORTHO05D008052 5.7e-14 82.8 129 41.9
BolC7t42010H Brassica oleracea HOM05D004896 ORTHO05D028223 2.2e-13 80.9 134 45.5
Lj5A532G11 Lonicera japonica HOM05D006315 ORTHO05D008052 1.8e-12 77.8 129 40.3
EL10Ac4g09000 Beta vulgaris HOM05D006315 ORTHO05D008052 2.9e-10 70.5 38 84.2
C09p41080 Brassica napus HOM05D004896 ORTHO05D028223 1.5e-09 68.2 39 84.6
BolC9t56987H Brassica oleracea HOM05D004896 ORTHO05D028223 1.5e-09 68.2 39 84.6
HPP92_002889 Vanilla planifolia HOM05D006315 ORTHO05D008052 5.2e-07 59.7 51 54.9
Duzib084G0831 Durio zibethinus HOM05D001237 ORTHO05D009110 5.7e-06 56.2 235 23.8
RcHm_v2.0_Chr7g0213081 Rosa chinensis HOM05D001237 ORTHO05D009110 9.8e-06 55.5 231 26.4


User provided reference genes

Program Settings