Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B01879 Eucalyptus grandis HOM05D000681 ORTHO05D191187 1.5e-61 239.2 112 100.0
Eucgr.B01238 Eucalyptus grandis HOM05D000681 ORTHO05D193531 6.7e-41 170.6 91 90.1
Eucgr.B00981 Eucalyptus grandis HOM05D000681 ORTHO05D193828 5.3e-38 161.0 103 75.7
Eucgr.B00896 Eucalyptus grandis HOM05D000681 ORTHO05D195126 6.9e-38 160.6 103 75.7
Eucgr.L02862 Eucalyptus grandis HOM05D000681 ORTHO05D194551 5.9e-37 157.5 103 74.8
Eucgr.B02970 Eucalyptus grandis HOM05D000681 ORTHO05D045318 2.4e-14 82.4 45 82.2
Eucgr.B01233 Eucalyptus grandis HOM05D000681 ORTHO05D045318 7.0e-14 80.9 45 80.0
COL.COLO4_10754 Corchorus olitorius HOM05D000681 ORTHO05D007906 1.4e-09 66.6 42 71.4
Peaxi162Scf00074g00436 Petunia axillaris HOM05D000681 ORTHO05D007906 3.0e-09 65.5 41 70.7
Thecc.03G303300 Theobroma cacao HOM05D000681 ORTHO05D007906 3.0e-09 65.5 42 69.0
Dinv02365 Davidia involucrata HOM05D000681 ORTHO05D007906 4.0e-09 65.1 41 65.9
FAN08G3564 Fragaria x ananassa HOM05D000681 ORTHO05D007906 4.0e-09 65.1 39 71.8
FAN13G0722 Fragaria x ananassa HOM05D000681 ORTHO05D007906 4.0e-09 65.1 39 71.8
RcHm_v2.0_Chr7g0186321 Rosa chinensis HOM05D000681 ORTHO05D007906 4.0e-09 65.1 39 71.8
Manes.02G005700 Manihot esculenta HOM05D000681 ORTHO05D007906 5.2e-09 64.7 41 70.7
Eucgr.E01026 Eucalyptus grandis HOM05D000681 ORTHO05D007906 6.8e-09 64.3 41 68.3
FvH4_5g11480 Fragaria vesca HOM05D000681 ORTHO05D007906 6.8e-09 64.3 39 69.2
FAN04G2935 Fragaria x ananassa HOM05D000681 ORTHO05D007906 6.8e-09 64.3 39 69.2
FAN18G3277 Fragaria x ananassa HOM05D000681 ORTHO05D007906 6.8e-09 64.3 39 69.2
FAN18G3879 Fragaria x ananassa HOM05D000681 ORTHO05D007906 6.8e-09 64.3 39 69.2
Prupe.5G126100 Prunus persica HOM05D000681 ORTHO05D007906 8.8e-09 63.9 41 65.9
arahy.Tifrunner.gnm1.ann1.3Z5EIP Arachis hypogaea HOM05D000681 ORTHO05D007906 1.2e-08 63.5 39 69.2
arahy.Tifrunner.gnm1.ann1.7SWW0C Arachis hypogaea HOM05D000681 ORTHO05D007906 1.2e-08 63.5 39 69.2
arahy.Tifrunner.gnm1.ann1.NV1IU0 Arachis hypogaea HOM05D000681 ORTHO05D007906 1.2e-08 63.5 39 69.2
CSS0003751 Camellia sinensis var. sinensis HOM05D000681 ORTHO05D007906 1.2e-08 63.5 39 69.2
CSS0011347 Camellia sinensis var. sinensis HOM05D000681 ORTHO05D007906 1.2e-08 63.5 39 69.2
Glyma.13G002500 Glycine max HOM05D000681 ORTHO05D007906 1.2e-08 63.5 41 68.3
Gohir.A08G111500 Gossypium hirsutum HOM05D000681 ORTHO05D007906 1.2e-08 63.5 42 66.7
Gohir.D08G124500 Gossypium hirsutum HOM05D000681 ORTHO05D007906 1.2e-08 63.5 42 66.7
Gorai.004G131200 Gossypium raimondii HOM05D000681 ORTHO05D007906 1.2e-08 63.5 42 66.7
Duzib205G1886 Durio zibethinus HOM05D000681 ORTHO05D007906 1.5e-08 63.2 42 69.0
Sabra01G0063600 Salix brachista HOM05D000681 ORTHO05D007906 1.5e-08 63.2 41 68.3
Aa31LG2G1560 Aethionema arabicum HOM05D000681 ORTHO05D007906 2.0e-08 62.8 42 64.3
BcaB07g31474 Brassica carinata HOM05D000681 ORTHO05D007906 2.0e-08 62.8 42 64.3
A09p14590 Brassica napus HOM05D000681 ORTHO05D007906 2.0e-08 62.8 42 64.3
C09p17670 Brassica napus HOM05D000681 ORTHO05D007906 2.0e-08 62.8 42 64.3
BolC9t54661H Brassica oleracea HOM05D000681 ORTHO05D007906 2.0e-08 62.8 42 64.3
BraA09t37107Z Brassica rapa HOM05D000681 ORTHO05D007906 2.0e-08 62.8 42 64.3
CARHR046390 Cardamine hirsuta HOM05D000681 ORTHO05D007906 2.0e-08 62.8 42 64.3
CiPaw.11G115800 Carya illinoinensis HOM05D000681 ORTHO05D007906 2.0e-08 62.8 41 65.9
Thhalv10023304m.g Eutrema salsugineum HOM05D000681 ORTHO05D007906 2.0e-08 62.8 42 64.3
Glyma.20G066600 Glycine max HOM05D000681 ORTHO05D007906 2.0e-08 62.8 41 68.3
Sp2g00200 Schrenkiella parvula HOM05D000681 ORTHO05D007906 2.0e-08 62.8 42 64.3
Cfa011960 Carpinus fangiana HOM05D000681 ORTHO05D007906 2.6e-08 62.4 39 69.2
Cc08_g16470 Coffea canephora HOM05D000681 ORTHO05D007906 2.6e-08 62.4 41 65.9
Lj6g0006526 Lotus japonicus HOM05D000681 ORTHO05D007906 2.6e-08 62.4 41 68.3
Nn3g18935 Nelumbo nucifera HOM05D000681 ORTHO05D007906 2.6e-08 62.4 42 66.7
TWI60G0289 Tripterygium wilfordii HOM05D000681 ORTHO05D007906 2.6e-08 62.4 41 65.9
CAN.G567.63 Capsicum annuum HOM05D000681 ORTHO05D007906 3.4e-08 62.0 41 65.9
MD06G1113200 Malus domestica HOM05D000681 ORTHO05D007906 3.4e-08 62.0 41 63.4
MD14G1134300 Malus domestica HOM05D000681 ORTHO05D007906 3.4e-08 62.0 41 63.4
Potri.001G087300 Populus trichocarpa HOM05D000681 ORTHO05D007906 3.4e-08 62.0 41 68.3
vmacro11525 Vaccinium macrocarpon HOM05D000681 ORTHO05D007906 3.4e-08 62.0 57 50.9
AL2G10220 Arabidopsis lyrata HOM05D000681 ORTHO05D007906 4.4e-08 61.6 42 61.9
AT1G64550 Arabidopsis thaliana HOM05D000681 ORTHO05D007906 4.4e-08 61.6 42 61.9
Carub.0002s0020 Capsella rubella HOM05D000681 ORTHO05D007906 4.4e-08 61.6 42 61.9
PGR042G3327 Punica granatum HOM05D000681 ORTHO05D007906 4.4e-08 61.6 41 63.4
GSVIVG01019609001 Vitis vinifera HOM05D000681 ORTHO05D007906 4.4e-08 61.6 41 65.9
Lj2A160G61 Lonicera japonica HOM05D000681 ORTHO05D007906 5.7e-08 61.2 39 64.1
Nitab4.5_0002367g0160 Nicotiana tabacum HOM05D000681 ORTHO05D007906 5.7e-08 61.2 39 66.7
Nitab4.5_0002439g0090 Nicotiana tabacum HOM05D000681 ORTHO05D007906 5.7e-08 61.2 39 66.7
Hund11369 Selenicereus undatus HOM05D000681 ORTHO05D007906 5.7e-08 61.2 41 65.9
Solyc08g082850.3 Solanum lycopersicum HOM05D000681 ORTHO05D007906 5.7e-08 61.2 39 66.7
Sopen08g031080 Solanum pennellii HOM05D000681 ORTHO05D007906 5.7e-08 61.2 39 66.7
THA.LOC104823617 Tarenaya hassleriana HOM05D000681 ORTHO05D007906 5.7e-08 61.2 41 61.0
HPP92_025719 Vanilla planifolia HOM05D000681 ORTHO05D007906 5.7e-08 61.2 43 60.5
VMungo0540G0066 Vigna mungo HOM05D000681 ORTHO05D007906 5.7e-08 61.2 39 66.7
Cpa.g.sc1802.2 Carica papaya HOM05D000681 ORTHO05D007906 7.5e-08 60.8 39 66.7
ClCG01G001830 Citrullus lanatus HOM05D000681 ORTHO05D007906 7.5e-08 60.8 41 65.9
MELO3C005755.2 Cucumis melo HOM05D000681 ORTHO05D007906 7.5e-08 60.8 41 65.9
CsaV3_5G001980 Cucumis sativus L. HOM05D000681 ORTHO05D007906 7.5e-08 60.8 41 65.9
Phvul.006G000500 Phaseolus vulgaris HOM05D000681 ORTHO05D007906 7.5e-08 60.8 39 66.7
unitig_748.g8249 Utricularia gibba HOM05D001832 ORTHO05D007906 7.5e-08 60.8 41 63.4
Actinidia22187 Actinidia chinensis HOM05D000681 ORTHO05D007906 9.8e-08 60.5 41 63.4
DCAR_029862 Daucus carota HOM05D000681 ORTHO05D007906 9.8e-08 60.5 39 64.1
PSO135G0585 Papaver somniferum HOM05D000681 ORTHO05D007906 1.3e-07 60.1 42 59.5
PSO384G3259 Papaver somniferum HOM05D000681 ORTHO05D007906 1.3e-07 60.1 42 59.5
QL02p029270 Quercus lobata HOM05D000681 ORTHO05D007906 1.7e-07 59.7 39 64.1
Rhsim02G0248800 Rhododendron simsii HOM05D000681 ORTHO05D007906 1.7e-07 59.7 41 61.0
ECA233G2785 Erigeron canadensis HOM05D000681 ORTHO05D007906 2.2e-07 59.3 39 64.1
HanXRQChr07g0189311 Helianthus annuus HOM05D000681 ORTHO05D007906 2.2e-07 59.3 39 64.1
SGA_v2.0_scaffold36G14288 Striga asiatica HOM05D000681 ORTHO05D007906 2.2e-07 59.3 39 64.1
TAR629G1351 Trochodendron aralioides HOM05D000681 ORTHO05D007906 2.2e-07 59.3 41 63.4
Aqoxy7G00050 Aquilegia oxysepala HOM05D000681 ORTHO05D007906 2.8e-07 58.9 39 64.1
Eucgr.B01070 Eucalyptus grandis HOM05D000681 ORTHO05D191422 2.8e-07 58.9 36 77.8
SMO174G0206 Selaginella moellendorffii HOM05D000681 ORTHO05D007906 2.8e-07 58.9 39 61.5
PGSC0003DMG400012253 Solanum tuberosum HOM05D000681 ORTHO05D007906 2.8e-07 58.9 39 64.1
Lsat_1_v5_gn_6_8920 Lactuca sativa HOM05D000681 ORTHO05D007906 3.7e-07 58.5 41 63.4
SEGI_25059 Sequoiadendron giganteum HOM05D000681 ORTHO05D007906 3.7e-07 58.5 39 64.1
Zm00001eb259290 Zea mays HOM05D000681 ORTHO05D007906 4.8e-07 58.2 39 59.0
Ca_16302_v3 Cicer arietinum L. HOM05D000681 ORTHO05D007906 6.3e-07 57.8 41 58.5
Ciclev10019068m.g Citrus clementina HOM05D000681 ORTHO05D007906 6.3e-07 57.8 39 61.5
Ciclev10033898m.g Citrus clementina HOM05D000681 ORTHO05D007906 6.3e-07 57.8 39 61.5
ATR0680G411 Amborella trichopoda HOM05D000681 ORTHO05D007906 8.3e-07 57.4 41 58.5
MSTRG.24855 Avicennia marina HOM05D000681 ORTHO05D007906 8.3e-07 57.4 39 61.5
MBI18_g16983_MAGBIO Magnolia biondii HOM05D000681 ORTHO05D007906 8.3e-07 57.4 41 58.5
TPR.G22979 Trifolium pratense HOM05D000681 ORTHO05D007906 8.3e-07 57.4 41 58.5
CANSAT21G2350 Cannabis sativa HOM05D000681 ORTHO05D007906 1.1e-06 57.0 39 61.5
Sed0022208 Sechium edule HOM05D000681 ORTHO05D007906 1.1e-06 57.0 38 63.2
Atru.chr9.1961 Acer truncatum HOM05D000681 ORTHO05D007906 1.4e-06 56.6 39 61.5
CDE06G2334 Ceratophyllum demersum HOM05D000681 ORTHO05D007906 1.4e-06 56.6 41 61.0
Migut.C00616 Erythranthe guttata HOM05D000681 ORTHO05D007906 1.8e-06 56.2 38 60.5
Medtr3g080970 Medicago truncatula HOM05D000681 ORTHO05D007906 1.8e-06 56.2 41 56.1
Psat5g108480 Pisum sativum HOM05D000681 ORTHO05D007906 3.1e-06 55.5 41 53.7
Mapoly0102s0020 Marchantia polymorpha HOM05D000681 ORTHO05D007906 4.1e-06 55.1 39 59.0
SalBow6G2752 Salvia bowleyana HOM05D000681 ORTHO05D007906 5.4e-06 54.7 38 57.9
EL10Ac5g12474 Beta vulgaris HOM05D000681 ORTHO05D007906 7.0e-06 54.3 41 58.5
AUR62007024 Chenopodium quinoa HOM05D000681 ORTHO05D007906 7.0e-06 54.3 41 58.5
AUR62019886 Chenopodium quinoa HOM05D000681 ORTHO05D007906 7.0e-06 54.3 41 58.5


User provided reference genes

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