Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B01740 Eucalyptus grandis HOM05D006992 ORTHO05D008752 2.2e-120 435.6 222 100.0
CiPaw.08G178000 Carya illinoinensis HOM05D006992 ORTHO05D008752 3.3e-84 315.5 190 80.0
CiPaw.07G008900 Carya illinoinensis HOM05D006992 ORTHO05D008752 3.7e-83 312.0 223 70.0
MD12G1234200 Malus domestica HOM05D006992 ORTHO05D008752 1.1e-82 310.5 212 73.1
TWI36G0139 Tripterygium wilfordii HOM05D006992 ORTHO05D008752 1.8e-82 309.7 222 71.6
Actinidia33837 Actinidia chinensis HOM05D006992 ORTHO05D008752 1.2e-81 307.0 193 77.7
MELO3C015384.2 Cucumis melo HOM05D006992 ORTHO05D008752 2.0e-81 306.2 204 74.0
PGR083G1999 Punica granatum HOM05D006992 ORTHO05D008752 3.5e-81 305.4 205 73.2
ClCG03G016340 Citrullus lanatus HOM05D006992 ORTHO05D008752 4.5e-81 305.1 192 77.1
Ciclev10002483m.g Citrus clementina HOM05D006992 ORTHO05D008752 4.5e-81 305.1 222 69.4
Thecc.05G291400 Theobroma cacao HOM05D006992 ORTHO05D008752 5.9e-81 304.7 213 72.8
Nn3g21348 Nelumbo nucifera HOM05D006992 ORTHO05D008752 7.7e-81 304.3 222 70.3
Atru.chr2.657 Acer truncatum HOM05D006992 ORTHO05D008752 1.3e-80 303.5 204 74.0
TAR633G1762 Trochodendron aralioides HOM05D006992 ORTHO05D008752 1.3e-80 303.5 225 68.0
CsaV3_1G039620 Cucumis sativus L. HOM05D006992 ORTHO05D008752 2.2e-80 302.8 207 72.0
Gohir.A13G106100 Gossypium hirsutum HOM05D006992 ORTHO05D008752 2.2e-80 302.8 216 70.8
Gorai.013G122400 Gossypium raimondii HOM05D006992 ORTHO05D008752 2.2e-80 302.8 216 70.4
Gohir.D13G108900 Gossypium hirsutum HOM05D006992 ORTHO05D008752 1.1e-79 300.4 216 69.9
QL03p000176 Quercus lobata HOM05D006992 ORTHO05D008752 1.1e-79 300.4 197 75.1
RcHm_v2.0_Chr3g0452481 Rosa chinensis HOM05D006992 ORTHO05D008752 1.1e-79 300.4 209 70.8
THA.LOC104818652 Tarenaya hassleriana HOM05D006992 ORTHO05D008752 1.5e-79 300.1 197 74.6
Cfa006481 Carpinus fangiana HOM05D006992 ORTHO05D008752 2.5e-79 299.3 204 73.5
Glyma.19G241400 Glycine max HOM05D006992 ORTHO05D008752 2.5e-79 299.3 190 75.8
CSS0031345 Camellia sinensis var. sinensis HOM05D006992 ORTHO05D008752 4.2e-79 298.5 191 78.5
Lsat_1_v5_gn_2_67081 Lactuca sativa HOM05D006992 ORTHO05D008752 7.2e-79 297.7 215 70.2
CAN.G424.13 Capsicum annuum HOM05D006992 ORTHO05D008752 2.7e-78 295.8 196 75.0
Prupe.6G337300 Prunus persica HOM05D006992 ORTHO05D008752 2.7e-78 295.8 196 75.0
Sed0003148 Sechium edule HOM05D006992 ORTHO05D008752 2.7e-78 295.8 192 74.5
AT3G04950 Arabidopsis thaliana HOM05D006992 ORTHO05D008752 1.8e-77 293.1 211 68.2
FvH4_6g03930 Fragaria vesca HOM05D006992 ORTHO05D008752 1.8e-77 293.1 210 70.0
Oeu012474.1 Olea europaea HOM05D006992 ORTHO05D008752 3.0e-77 292.4 188 76.6
Sc09g0003710 Simmondsia chinensis HOM05D006992 ORTHO05D008752 3.0e-77 292.4 200 71.0
COL.COLO4_13636 Corchorus olitorius HOM05D004868 ORTHO05D006030 8.8e-77 290.8 184 77.2
CANSAT54G1892 Cannabis sativa HOM05D006992 ORTHO05D008752 1.1e-76 290.4 209 68.4
Sopen02g023930 Solanum pennellii HOM05D006992 ORTHO05D008752 1.1e-76 290.4 197 72.1
PGSC0003DMG400022358 Solanum tuberosum HOM05D006992 ORTHO05D008752 1.1e-76 290.4 197 72.6
Solyc02g079130.3 Solanum lycopersicum HOM05D006992 ORTHO05D008752 2.0e-76 289.7 197 72.1
Cc02_g31290 Coffea canephora HOM05D006992 ORTHO05D008752 5.7e-76 288.1 176 79.5
vmacro19674 Vaccinium macrocarpon HOM05D006992 ORTHO05D008752 9.7e-76 287.3 200 73.5
AL3G15290 Arabidopsis lyrata HOM05D006992 ORTHO05D008752 1.3e-75 287.0 210 68.1
Potri.013G034100 Populus trichocarpa HOM05D006992 ORTHO05D008752 1.3e-75 287.0 190 76.3
QL03p000513 Quercus lobata HOM05D006992 ORTHO05D008752 4.8e-75 285.0 215 68.4
CDE02G3150 Ceratophyllum demersum HOM05D006992 ORTHO05D008752 6.3e-75 284.6 189 73.0
Rhsim05G0148900 Rhododendron simsii HOM05D006992 ORTHO05D008752 6.3e-75 284.6 186 76.9
FAN14G0596 Fragaria x ananassa HOM05D006992 ORTHO05D008752 1.1e-74 283.9 214 67.3
Manes.09G157800 Manihot esculenta HOM05D006992 ORTHO05D008752 1.1e-74 283.9 194 73.2
CARHR079260 Cardamine hirsuta HOM05D006992 ORTHO05D008752 2.4e-74 282.7 211 66.8
Migut.N01946 Erythranthe guttata HOM05D006992 ORTHO05D008752 2.4e-74 282.7 192 71.9
Carub.0003s0417 Capsella rubella HOM05D006992 ORTHO05D008752 3.1e-74 282.3 195 70.8
DCAR_022834 Daucus carota HOM05D006992 ORTHO05D008752 3.1e-74 282.3 201 70.6
Thhalv10021439m.g Eutrema salsugineum HOM05D006992 ORTHO05D008752 4.1e-74 282.0 195 70.8
FAN09G1577 Fragaria x ananassa HOM05D000167 ORTHO05D000640 7.0e-74 281.2 215 67.0
Phvul.006G097900 Phaseolus vulgaris HOM05D006992 ORTHO05D008752 9.1e-74 280.8 193 72.0
GSVIVG01021889001 Vitis vinifera HOM05D006992 ORTHO05D008752 9.1e-74 280.8 177 78.0
FAN05G0877 Fragaria x ananassa HOM05D000167 ORTHO05D000640 1.2e-73 280.4 215 67.0
ATR0706G207 Amborella trichopoda HOM05D006992 ORTHO05D008752 1.6e-73 280.0 197 70.1
Ca_09397_v3 Cicer arietinum L. HOM05D006992 ORTHO05D008752 2.7e-73 279.3 195 70.3
Gorai.007G286500 Gossypium raimondii HOM05D006992 ORTHO05D008752 2.7e-73 279.3 189 70.4
Nitab4.5_0004284g0080 Nicotiana tabacum HOM05D006992 ORTHO05D008752 2.7e-73 279.3 188 76.1
FAN05G5181 Fragaria x ananassa HOM05D006992 ORTHO05D008752 1.0e-72 277.3 214 66.4
Sabra13G0033300 Salix brachista HOM05D006992 ORTHO05D008752 1.3e-72 276.9 184 73.9
Hund06999 Selenicereus undatus HOM05D006992 ORTHO05D008752 1.3e-72 276.9 189 74.1
BcaB04g19286 Brassica carinata HOM05D006992 ORTHO05D008752 1.7e-72 276.6 195 68.7
BcaC01g04339 Brassica carinata HOM05D006992 ORTHO05D008752 1.7e-72 276.6 198 68.2
HanXRQChr14g0445751 Helianthus annuus HOM05D006992 ORTHO05D008752 2.2e-72 276.2 186 72.6
Gohir.A11G256900 Gossypium hirsutum HOM05D006992 ORTHO05D008752 2.9e-72 275.8 187 69.5
Lj1g0025869 Lotus japonicus HOM05D006992 ORTHO05D008752 8.5e-72 274.2 201 69.7
PSO832G0773 Papaver somniferum HOM05D006992 ORTHO05D008752 8.5e-72 274.2 222 62.6
Sp3g03770 Schrenkiella parvula HOM05D006992 ORTHO05D008752 8.5e-72 274.2 196 67.9
PSO210G3204 Papaver somniferum HOM05D006992 ORTHO05D008752 1.1e-71 273.9 222 62.6
TPR.G6916 Trifolium pratense HOM05D006992 ORTHO05D008752 1.9e-71 273.1 193 68.9
Nitab4.5_0001410g0140 Nicotiana tabacum HOM05D006992 ORTHO05D008752 2.5e-71 272.7 188 74.5
Medtr7g114390 Medicago truncatula HOM05D006992 ORTHO05D008752 7.2e-71 271.2 190 68.4
EL10Ac4g09207 Beta vulgaris HOM05D006992 ORTHO05D008752 1.2e-70 270.4 203 67.5
ECA238G1326 Erigeron canadensis HOM05D006992 ORTHO05D008752 1.2e-70 270.4 175 75.4
Aqoxy5G00680 Aquilegia oxysepala HOM05D006992 ORTHO05D008752 3.6e-70 268.9 224 61.2
FAN02G1922 Fragaria x ananassa HOM05D000167 ORTHO05D000640 1.8e-69 266.5 204 67.6
BraA03t12570Z Brassica rapa HOM05D006992 ORTHO05D008752 2.3e-69 266.2 189 68.8
Psat0s2796g0040 Pisum sativum HOM05D006992 ORTHO05D008752 2.3e-69 266.2 205 64.9
Lalb_Chr18g0045231 Lupinus albus HOM05D006992 ORTHO05D008752 6.8e-69 264.6 224 61.6
BolC3t16415H Brassica oleracea HOM05D006992 ORTHO05D008752 8.8e-69 264.2 192 67.7
Peaxi162Scf00103g00035 Petunia axillaris HOM05D006992 ORTHO05D008752 1.2e-68 263.8 177 71.2
A03p33950 Brassica napus HOM05D003164 ORTHO05D003575 3.4e-68 262.3 207 63.8
AUR62000954 Chenopodium quinoa HOM05D006992 ORTHO05D008752 5.7e-68 261.5 209 65.6
C03p41330 Brassica napus HOM05D003164 ORTHO05D003575 7.5e-68 261.2 191 67.0
SalBow3G4063 Salvia bowleyana HOM05D006992 ORTHO05D008752 6.3e-67 258.1 208 61.5
SGA_v2.0_scaffold80G25908 Striga asiatica HOM05D006992 ORTHO05D008752 1.4e-66 256.9 191 65.4
Dinv17742 Davidia involucrata HOM05D004868 ORTHO05D006030 7.0e-66 254.6 146 84.9
Haze_04310 Corylus avellana HOM05D006992 ORTHO05D008752 9.1e-66 254.2 316 49.1
Migut.N01944 Erythranthe guttata HOM05D006992 ORTHO05D008752 1.6e-65 253.4 190 67.4
arahy.Tifrunner.gnm1.ann1.ZZK2AU Arachis hypogaea HOM05D006992 ORTHO05D008752 2.7e-65 252.7 190 66.8
Lj7A478T92 Lonicera japonica HOM05D006992 ORTHO05D008752 8.5e-64 247.7 278 52.9
Os06g0298500 Oryza sativa ssp. japonica HOM05D006992 ORTHO05D008752 7.2e-63 244.6 189 63.5
arahy.Tifrunner.gnm1.ann1.26USVU Arachis hypogaea HOM05D006992 ORTHO05D008752 3.6e-62 242.3 185 65.9
Zm00001eb381040 Zea mays HOM05D006992 ORTHO05D008752 1.1e-58 230.7 188 63.8
AUR62005014 Chenopodium quinoa HOM05D006992 ORTHO05D008752 7.0e-58 228.0 186 64.0
HPP92_017993 Vanilla planifolia HOM05D006992 ORTHO05D008752 9.2e-58 227.6 188 60.6
unitig_746.g26840 Utricularia gibba HOM05D006992 ORTHO05D008752 7.7e-57 224.6 143 75.5
HPP92_026697 Vanilla planifolia HOM05D006992 ORTHO05D008752 3.8e-56 222.2 188 59.6
SEGI_08689 Sequoiadendron giganteum HOM05D006992 ORTHO05D008752 7.3e-55 218.0 186 58.6
Glyma.03G244000 Glycine max HOM05D006992 ORTHO05D008752 3.4e-52 209.1 154 66.9
Gohir.D11G266700 Gossypium hirsutum HOM05D006992 ORTHO05D008752 8.3e-51 204.5 146 66.4
VMungo0540G1333 Vigna mungo HOM05D006992 ORTHO05D008752 1.1e-50 204.1 148 69.6
Ca_30169_v3 Cicer arietinum L. HOM05D006992 ORTHO05D008752 1.2e-49 200.7 150 66.7
Cpa.g.sc117.39 Carica papaya HOM05D004868 ORTHO05D006030 8.3e-43 177.9 98 87.8
Gohir.D03G094700 Gossypium hirsutum HOM05D006992 ORTHO05D008752 2.0e-36 156.8 98 73.5
SEGI_13740 Sequoiadendron giganteum HOM05D006992 ORTHO05D008752 2.9e-35 152.9 142 52.8
PSO210G4341 Papaver somniferum HOM05D006992 ORTHO05D008752 6.4e-35 151.8 161 50.3
PSO339G2351 Papaver somniferum HOM05D006992 ORTHO05D008752 4.1e-34 149.1 161 48.4
PSO384G0024 Papaver somniferum HOM05D006992 ORTHO05D008752 6.0e-33 145.2 161 47.8
FAN05G0951 Fragaria x ananassa HOM05D000167 ORTHO05D000640 1.2e-30 137.5 134 59.0
Aa31LG5G15340 Aethionema arabicum HOM05D006992 ORTHO05D008752 4.0e-29 132.5 80 76.2
Gohir.D07G141600 Gossypium hirsutum HOM05D006992 ORTHO05D008752 5.8e-28 128.6 78 76.9
Gorai.001G169400 Gossypium raimondii HOM05D006992 ORTHO05D008752 5.8e-28 128.6 78 76.9
Gohir.D12G044200 Gossypium hirsutum HOM05D006992 ORTHO05D008752 1.1e-26 124.4 78 74.4
RcHm_v2.0_Chr3g0452521 Rosa chinensis HOM05D006992 ORTHO05D008752 1.7e-24 117.1 110 54.5
SMO361G0250 Selaginella moellendorffii HOM05D006992 ORTHO05D008752 1.8e-21 107.1 213 36.6
RcHm_v2.0_Chr1g0321781 Rosa chinensis HOM05D006992 ORTHO05D008752 8.4e-19 98.2 61 73.8
RcHm_v2.0_Chr6g0246461 Rosa chinensis HOM05D006992 ORTHO05D008752 2.4e-18 96.7 61 72.1
Gohir.D03G082200 Gossypium hirsutum HOM05D006992 ORTHO05D008752 1.3e-16 90.9 56 76.8
VMungo0331G0785 Vigna mungo HOM05D006992 ORTHO05D008752 1.3e-16 90.9 77 59.7
Sp3g03780 Schrenkiella parvula HOM05D000160 ORTHO05D000914 1.4e-10 70.9 39 82.1
Gorai.010G111000 Gossypium raimondii HOM05D001408 ORTHO05D001312 5.4e-10 68.9 40 77.5
SGA_v2.0_scaffold243G44307 Striga asiatica HOM05D060893 ORTHO05D008752 1.2e-09 67.8 123 39.0
Gohir.D06G096300 Gossypium hirsutum HOM05D001408 ORTHO05D001312 4.6e-09 65.9 40 72.5
Gorai.008G101100 Gossypium raimondii HOM05D006061 ORTHO05D007450 6.0e-09 65.5 39 76.9
RcHm_v2.0_Chr3g0452531 Rosa chinensis HOM05D006992 ORTHO05D008752 2.3e-08 63.5 35 85.7


User provided reference genes

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