Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B01738 Eucalyptus grandis HOM05D004244 ORTHO05D004964 3.9e-155 551.6 309 100.0
PGR031G0411 Punica granatum HOM05D004244 ORTHO05D004964 8.8e-51 204.9 218 55.0
Gohir.D11G254600 Gossypium hirsutum HOM05D004244 ORTHO05D004964 1.5e-50 204.1 224 55.4
Gorai.007G273200 Gossypium raimondii HOM05D004244 ORTHO05D004964 1.5e-50 204.1 224 55.4
Atru.chr2.1111 Acer truncatum HOM05D004244 ORTHO05D004964 3.7e-49 199.5 272 46.7
Duzib106G0844 Durio zibethinus HOM05D004244 ORTHO05D004964 1.9e-45 187.2 222 51.8
Manes.08G141600 Manihot esculenta HOM05D004244 ORTHO05D004964 3.0e-43 179.9 222 49.5
Ciclev10021373m.g Citrus clementina HOM05D004244 ORTHO05D004964 2.2e-41 173.7 307 42.7
Gohir.A11G244500 Gossypium hirsutum HOM05D004244 ORTHO05D004964 2.0e-39 167.2 221 49.3
TAR633G1781 Trochodendron aralioides HOM05D004244 ORTHO05D004964 2.3e-38 163.7 311 43.4
MBI07_g19046_MAGBIO Magnolia biondii HOM05D004244 ORTHO05D004964 5.0e-38 162.5 266 43.2
Thecc.05G266700 Theobroma cacao HOM05D004244 ORTHO05D004964 5.0e-38 162.5 222 47.3
COL.COLO4_15535 Corchorus olitorius HOM05D004244 ORTHO05D004964 2.5e-37 160.2 174 53.4
GSVIVG01026322001 Vitis vinifera HOM05D004244 ORTHO05D004964 5.6e-37 159.1 190 54.2
Actinidia34761 Actinidia chinensis HOM05D004244 ORTHO05D004964 1.2e-36 157.9 311 41.5
Nn1g03029 Nelumbo nucifera HOM05D004244 ORTHO05D004964 1.6e-36 157.5 270 43.0
Actinidia38930 Actinidia chinensis HOM05D004244 ORTHO05D004964 2.8e-36 156.8 313 39.9
Potri.019G023400 Populus trichocarpa HOM05D004244 ORTHO05D004964 2.8e-36 156.8 266 40.6
Cpa.g.sc756.3 Carica papaya HOM05D004244 ORTHO05D004964 4.7e-36 156.0 195 50.3
Nn3g19830 Nelumbo nucifera HOM05D004244 ORTHO05D004964 3.1e-35 153.3 278 42.4
Nitab4.5_0000841g0060 Nicotiana tabacum HOM05D004244 ORTHO05D004964 6.4e-33 145.6 232 41.4
Rhsim09G0132600 Rhododendron simsii HOM05D004244 ORTHO05D004964 6.4e-33 145.6 228 43.9
Nitab4.5_0008594g0020 Nicotiana tabacum HOM05D004244 ORTHO05D004964 8.3e-33 145.2 232 42.2
TAR362G0565 Trochodendron aralioides HOM05D004244 ORTHO05D004964 1.1e-32 144.8 320 39.1
GSVIVG01001856001 Vitis vinifera HOM05D004244 ORTHO05D004964 9.2e-32 141.7 192 45.3
Aqoxy5G00098 Aquilegia oxysepala HOM05D004244 ORTHO05D004964 1.2e-31 141.4 268 38.8
Sabra19G0033400 Salix brachista HOM05D004244 ORTHO05D004964 6.0e-31 139.0 187 49.2
Manes.03G156200 Manihot esculenta HOM05D004244 ORTHO05D004964 5.0e-30 136.0 265 38.5
Peaxi162Scf00077g00117 Petunia axillaris HOM05D004244 ORTHO05D004964 5.0e-30 136.0 219 42.9
QL06p021978 Quercus lobata HOM05D004244 ORTHO05D004964 1.1e-29 134.8 206 40.8
Ca_11893_v3 Cicer arietinum L. HOM05D004244 ORTHO05D004964 1.5e-29 134.4 221 41.2
MD16G1230800 Malus domestica HOM05D004244 ORTHO05D004964 9.5e-29 131.7 208 43.8
CDE11G0045 Ceratophyllum demersum HOM05D004244 ORTHO05D004964 1.2e-28 131.3 229 39.7
Medtr1g045520 Medicago truncatula HOM05D004244 ORTHO05D004964 6.2e-28 129.0 205 41.5
TPR.G23981 Trifolium pratense HOM05D004244 ORTHO05D004964 2.3e-27 127.1 213 40.8
Oeu010184.1 Olea europaea HOM05D004244 ORTHO05D004964 3.1e-27 126.7 319 36.1
FAN17G1122 Fragaria x ananassa HOM05D004244 ORTHO05D004964 4.0e-27 126.3 216 38.9
Sopen04g021060 Solanum pennellii HOM05D004244 ORTHO05D004964 4.0e-27 126.3 235 40.4
MELO3C023072.2 Cucumis melo HOM05D004244 ORTHO05D004964 5.2e-27 125.9 228 38.6
Hma1.2p1_0130F.1_g060490 Hydrangea macrophylla HOM05D004244 ORTHO05D004964 5.2e-27 125.9 319 36.1
MD13G1225800 Malus domestica HOM05D004244 ORTHO05D004964 8.9e-27 125.2 204 41.7
FvH4_4g05190 Fragaria vesca HOM05D004244 ORTHO05D004964 1.2e-26 124.8 216 39.4
Phvul.007G227000 Phaseolus vulgaris HOM05D004244 ORTHO05D004964 1.5e-26 124.4 224 37.9
Dinv27132 Davidia involucrata HOM05D004244 ORTHO05D004964 3.4e-26 123.2 224 40.6
Glyma.10G132400 Glycine max HOM05D004244 ORTHO05D004964 3.4e-26 123.2 228 36.0
CiPaw.01G175300 Carya illinoinensis HOM05D004244 ORTHO05D004964 4.4e-26 122.9 320 34.1
FAN12G2846 Fragaria x ananassa HOM05D004244 ORTHO05D004964 5.8e-26 122.5 216 38.9
arahy.Tifrunner.gnm1.ann1.QYR710 Arachis hypogaea HOM05D004244 ORTHO05D004964 7.5e-26 122.1 207 40.1
CAN.G4.41 Capsicum annuum HOM05D004244 ORTHO05D004964 7.5e-26 122.1 185 43.2
Prupe.1G052600 Prunus persica HOM05D004244 ORTHO05D004964 7.5e-26 122.1 281 40.9
Lalb_Chr03g0036891 Lupinus albus HOM05D004244 ORTHO05D004964 1.3e-25 121.3 218 40.4
Cc09_g03010 Coffea canephora HOM05D004244 ORTHO05D004964 2.9e-25 120.2 230 41.7
CsaV3_2G012190 Cucumis sativus L. HOM05D004244 ORTHO05D004964 2.9e-25 120.2 315 35.2
Potri.010G063300 Populus trichocarpa HOM05D004244 ORTHO05D004964 4.9e-25 119.4 198 38.9
Sabra10G0043500 Salix brachista HOM05D004244 ORTHO05D004964 8.3e-25 118.6 199 38.7
arahy.Tifrunner.gnm1.ann1.9VYP7U Arachis hypogaea HOM05D004244 ORTHO05D004964 1.4e-24 117.9 309 39.2
Cfa014824 Carpinus fangiana HOM05D004244 ORTHO05D004964 1.9e-24 117.5 203 39.4
Lsat_1_v5_gn_2_42020 Lactuca sativa HOM05D004244 ORTHO05D004964 1.9e-24 117.5 192 41.7
Duzib052G0780 Durio zibethinus HOM05D004244 ORTHO05D004964 2.4e-24 117.1 217 37.3
Lj6g0017438 Lotus japonicus HOM05D004244 ORTHO05D004964 2.4e-24 117.1 212 39.2
PSO674G0105 Papaver somniferum HOM05D004244 ORTHO05D004964 2.4e-24 117.1 197 39.6
Thecc.04G269100 Theobroma cacao HOM05D004244 ORTHO05D004964 2.4e-24 117.1 199 36.7
Migut.F02055 Erythranthe guttata HOM05D004244 ORTHO05D004964 5.4e-24 115.9 276 36.6
Haze_11497 Corylus avellana HOM05D004244 ORTHO05D004964 1.2e-23 114.8 186 39.8
Hma1.2p1_0112F.1_g054970 Hydrangea macrophylla HOM05D004244 ORTHO05D004964 1.6e-23 114.4 309 39.5
AL3G14300 Arabidopsis lyrata HOM05D004244 ORTHO05D004964 2.1e-23 114.0 199 40.7
AT3G04310 Arabidopsis thaliana HOM05D004244 ORTHO05D004964 2.7e-23 113.6 187 41.7
TWI09G1213 Tripterygium wilfordii HOM05D004244 ORTHO05D004964 2.7e-23 113.6 204 41.2
Actinidia11381 Actinidia chinensis HOM05D004244 ORTHO05D004964 3.5e-23 113.2 224 35.3
CANSAT78G2336 Cannabis sativa HOM05D004244 ORTHO05D004964 3.5e-23 113.2 270 34.8
PSO170G0851 Papaver somniferum HOM05D004244 ORTHO05D004964 3.5e-23 113.2 196 39.3
EL10Ac4g09763 Beta vulgaris HOM05D004244 ORTHO05D004964 4.6e-23 112.8 196 39.3
Duzib052G0270 Durio zibethinus HOM05D004244 ORTHO05D004964 4.6e-23 112.8 204 36.8
Carub.0003s0352 Capsella rubella HOM05D004244 ORTHO05D004964 1.3e-22 111.3 187 41.2
Hund07175 Selenicereus undatus HOM05D004244 ORTHO05D004964 1.3e-22 111.3 198 41.4
VMungo0720G2410 Vigna mungo HOM05D004244 ORTHO05D004964 1.3e-22 111.3 191 40.3
Lj2C46G4 Lonicera japonica HOM05D004244 ORTHO05D004964 1.7e-22 110.9 177 40.7
COL.COLO4_16006 Corchorus olitorius HOM05D004244 ORTHO05D004964 3.9e-22 109.8 202 35.1
SalBow1G0411 Salvia bowleyana HOM05D004244 ORTHO05D004964 5.1e-22 109.4 282 34.0
HPP92_025817 Vanilla planifolia HOM05D004244 ORTHO05D004964 8.6e-22 108.6 270 34.1
ATR0723G041 Amborella trichopoda HOM05D004244 ORTHO05D004964 1.1e-21 108.2 186 39.8
Sp3g03210 Schrenkiella parvula HOM05D004244 ORTHO05D004964 4.3e-21 106.3 195 42.1
Peaxi162Scf00125g01118 Petunia axillaris HOM05D004244 ORTHO05D004964 7.3e-21 105.5 196 37.8
Gohir.D09G232300 Gossypium hirsutum HOM05D004244 ORTHO05D004964 1.2e-20 104.8 215 37.2
PGSC0003DMG402028717 Solanum tuberosum HOM05D004244 ORTHO05D004964 1.6e-20 104.4 178 42.1
MSTRG.9217 Avicennia marina HOM05D004244 ORTHO05D004964 2.1e-20 104.0 191 38.2
ClCG06G007490 Citrullus lanatus HOM05D004244 ORTHO05D004964 2.8e-20 103.6 203 38.4
Gohir.A09G231200 Gossypium hirsutum HOM05D004244 ORTHO05D004964 2.8e-20 103.6 213 37.1
SGA_v2.0_scaffold329G48831 Striga asiatica HOM05D004244 ORTHO05D004964 2.8e-20 103.6 272 33.5
CARHR078490 Cardamine hirsuta HOM05D004244 ORTHO05D004964 3.6e-20 103.2 201 37.3
Thhalv10021319m.g Eutrema salsugineum HOM05D004244 ORTHO05D004964 4.7e-20 102.8 195 41.5
Gorai.006G255200 Gossypium raimondii HOM05D004244 ORTHO05D004964 8.1e-20 102.1 214 37.9
Sc09g0001820 Simmondsia chinensis HOM05D004244 ORTHO05D004964 1.4e-19 101.3 323 33.7
Rhsim02G0048800 Rhododendron simsii HOM05D004244 ORTHO05D004964 1.8e-19 100.9 221 34.8
C03p40780 Brassica napus HOM05D004244 ORTHO05D004964 4.0e-19 99.8 199 40.7
BolC3t16346H Brassica oleracea HOM05D004244 ORTHO05D004964 4.0e-19 99.8 199 40.7
Sc19g0005660 Simmondsia chinensis HOM05D004244 ORTHO05D004964 4.0e-19 99.8 233 34.3
Nitab4.5_0000867g0080 Nicotiana tabacum HOM05D004244 ORTHO05D004964 6.8e-19 99.0 221 33.9
Psat1g024120 Pisum sativum HOM05D004244 ORTHO05D004964 1.2e-18 98.2 204 34.8
Atru.chr4.1873 Acer truncatum HOM05D004244 ORTHO05D004964 2.6e-18 97.1 192 38.0
BraA03t12533Z Brassica rapa HOM05D004244 ORTHO05D004964 2.6e-18 97.1 195 37.9
Nitab4.5_0000451g0020 Nicotiana tabacum HOM05D004244 ORTHO05D004964 2.6e-18 97.1 222 35.1
A03p33580 Brassica napus HOM05D004244 ORTHO05D004964 3.4e-18 96.7 195 39.0
BcaC01g04379 Brassica carinata HOM05D004244 ORTHO05D004964 5.8e-18 95.9 196 39.8
Cc03_g06840 Coffea canephora HOM05D004244 ORTHO05D004964 7.6e-18 95.5 206 37.4
BcaB04g19340 Brassica carinata HOM05D004244 ORTHO05D004964 1.7e-17 94.4 192 39.1
PGR004G0368 Punica granatum HOM05D004244 ORTHO05D004964 2.9e-17 93.6 202 37.6
Cpa.g.sc59.37 Carica papaya HOM05D004244 ORTHO05D004964 1.4e-16 91.3 190 35.3
Ah.06g187950 Amaranthus hybridus HOM05D004244 ORTHO05D004964 1.9e-16 90.9 134 36.6
vmacro10383 Vaccinium macrocarpon HOM05D004244 ORTHO05D004964 1.9e-16 90.9 223 35.0
Aa31LG5G14830 Aethionema arabicum HOM05D004244 ORTHO05D004964 5.4e-16 89.4 211 35.5
PGSC0003DMG402001493 Solanum tuberosum HOM05D004244 ORTHO05D004964 9.2e-16 88.6 210 31.9
Eucgr.H02883 Eucalyptus grandis HOM05D004244 ORTHO05D004964 1.6e-15 87.8 194 32.5
SalBow3G0496 Salvia bowleyana HOM05D004244 ORTHO05D004964 2.1e-15 87.4 205 34.6
SalBow3G1459 Salvia bowleyana HOM05D004244 ORTHO05D004964 2.1e-15 87.4 205 34.6
MSTRG.24646 Avicennia marina HOM05D004244 ORTHO05D004964 6.0e-15 85.9 231 32.5
ECA238G3737 Erigeron canadensis HOM05D004244 ORTHO05D004964 3.9e-14 83.2 172 33.7
Solyc09g091010.3 Solanum lycopersicum HOM05D004244 ORTHO05D004964 5.1e-14 82.8 204 33.8
Solyc04g050270.1 Solanum lycopersicum HOM05D004244 ORTHO05D004964 6.6e-14 82.4 174 38.5
Sopen09g033990 Solanum pennellii HOM05D004244 ORTHO05D004964 8.6e-14 82.0 204 33.3
THA.LOC104826102 Tarenaya hassleriana HOM05D004244 ORTHO05D004964 2.5e-13 80.5 189 35.4
EL10Ac3g06716 Beta vulgaris HOM05D004244 ORTHO05D004964 4.3e-13 79.7 199 32.7
AUR62006986 Chenopodium quinoa HOM05D004244 ORTHO05D004964 4.3e-13 79.7 185 34.6
AUR62000633 Chenopodium quinoa HOM05D004244 ORTHO05D004964 5.6e-13 79.3 189 32.8
Duzib151G0660 Durio zibethinus HOM05D004244 ORTHO05D004964 1.2e-12 78.2 142 33.8
Thhalv10017015m.g Eutrema salsugineum HOM05D004244 ORTHO05D004964 1.6e-12 77.8 231 29.4
Hund24865 Selenicereus undatus HOM05D004244 ORTHO05D004964 2.1e-12 77.4 133 37.6
Ciclev10005346m.g Citrus clementina HOM05D004244 ORTHO05D004964 4.7e-12 76.3 218 33.0
Sed0027895 Sechium edule HOM05D004244 ORTHO05D004964 4.7e-12 76.3 149 35.6
SGA_v2.0_scaffold398G50771 Striga asiatica HOM05D004244 ORTHO05D004964 6.2e-12 75.9 223 30.5
Carub.0004s1471 Capsella rubella HOM05D004244 ORTHO05D004964 8.1e-12 75.5 191 32.5
SalBow1G6706 Salvia bowleyana HOM05D004244 ORTHO05D004964 1.4e-11 74.7 86 44.2
Actinidia39939 Actinidia chinensis HOM05D004244 ORTHO05D004964 2.4e-11 73.9 133 34.6
CSS0047223 Camellia sinensis var. sinensis HOM05D004244 ORTHO05D004964 2.4e-11 73.9 161 36.6
CARHR127250 Cardamine hirsuta HOM05D004244 ORTHO05D004964 2.4e-11 73.9 224 29.5
Aa31LG5G4140 Aethionema arabicum HOM05D004244 ORTHO05D004964 3.1e-11 73.6 191 30.9
CSS0047414 Camellia sinensis var. sinensis HOM05D004244 ORTHO05D004964 3.1e-11 73.6 161 37.3
AT2G33250 Arabidopsis thaliana HOM05D004244 ORTHO05D004964 8.9e-11 72.0 191 30.9
Sp4g15550 Schrenkiella parvula HOM05D004244 ORTHO05D004964 8.9e-11 72.0 193 30.6
Migut.N00322 Erythranthe guttata HOM05D004244 ORTHO05D004964 1.5e-10 71.2 224 31.2
AL4G28880 Arabidopsis lyrata HOM05D004244 ORTHO05D004964 7.6e-10 68.9 221 27.6
DCAR_030773 Daucus carota HOM05D004244 ORTHO05D004964 7.6e-10 68.9 157 38.9
Medtr4g088590 Medicago truncatula HOM05D004244 ORTHO05D004964 9.9e-10 68.6 67 49.3
Duzib266G0003 Durio zibethinus HOM05D004244 ORTHO05D004964 4.9e-09 66.2 75 42.7
Oeu008815.1 Olea europaea HOM05D004244 ORTHO05D004964 4.9e-09 66.2 157 33.1
BraA04t18060Z Brassica rapa HOM05D006155 ORTHO05D007529 5.4e-08 62.8 217 28.6
BcaC02g07850 Brassica carinata HOM05D004244 ORTHO05D004964 7.1e-08 62.4 182 30.8
BcaC02g07847 Brassica carinata HOM05D004244 ORTHO05D004964 2.7e-07 60.5 226 28.8
A04p25560 Brassica napus HOM05D004244 ORTHO05D004964 3.5e-07 60.1 145 32.4
BolC4t27754H Brassica oleracea HOM05D006155 ORTHO05D007529 3.5e-07 60.1 213 26.8
C04p62700 Brassica napus HOM05D006155 ORTHO05D007529 1.3e-06 58.2 213 26.3


User provided reference genes

Program Settings