Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B01587 Eucalyptus grandis HOM05D007614 ORTHO05D009538 3.1e-105 385.2 202 100.0
Thecc.04G287600 Theobroma cacao HOM05D007614 ORTHO05D009538 1.6e-56 223.4 202 61.4
Potri.010G011800 Populus trichocarpa HOM05D007614 ORTHO05D009538 2.1e-56 223.0 201 60.7
TAR365G0799 Trochodendron aralioides HOM05D007614 ORTHO05D009538 2.1e-56 223.0 202 59.4
COL.COLO4_37910 Corchorus olitorius HOM05D007614 ORTHO05D009538 6.6e-55 218.0 203 60.1
Dinv29737 Davidia involucrata HOM05D007614 ORTHO05D009538 1.1e-54 217.2 202 61.4
QL06p010082 Quercus lobata HOM05D007614 ORTHO05D009538 1.1e-54 217.2 202 59.4
Cfa015415 Carpinus fangiana HOM05D007614 ORTHO05D009538 7.3e-54 214.5 210 61.0
Cpa.g.c41899 Carica papaya HOM05D007614 ORTHO05D009538 9.5e-54 214.2 204 57.8
PGR031G0733 Punica granatum HOM05D007614 ORTHO05D009538 1.2e-53 213.8 206 61.2
Haze_01174 Corylus avellana HOM05D007614 ORTHO05D009538 2.3e-52 209.5 203 59.6
CiPaw.02G080700 Carya illinoinensis HOM05D007614 ORTHO05D009538 2.0e-51 206.5 202 57.9
Sabra10G0007500 Salix brachista HOM05D007614 ORTHO05D009538 4.4e-51 205.3 201 57.7
Duzib151G0258 Durio zibethinus HOM05D007614 ORTHO05D009538 5.8e-51 204.9 204 56.9
Prupe.1G132900 Prunus persica HOM05D007614 ORTHO05D009538 5.8e-51 204.9 202 60.9
TWI73G0642 Tripterygium wilfordii HOM05D007614 ORTHO05D009538 1.6e-48 196.8 205 56.6
CSS0029892 Camellia sinensis var. sinensis HOM05D007614 ORTHO05D009538 1.7e-47 193.4 200 57.0
MD13G1166500 Malus domestica HOM05D007614 ORTHO05D009538 3.9e-47 192.2 208 54.8
CSS0000522 Camellia sinensis var. sinensis HOM05D007614 ORTHO05D009538 1.5e-46 190.3 200 56.5
Aqoxy2G02920 Aquilegia oxysepala HOM05D007614 ORTHO05D009538 4.3e-46 188.7 199 56.8
Nn3g21526 Nelumbo nucifera HOM05D007614 ORTHO05D009538 1.2e-45 187.2 200 54.0
CANSAT78G1530 Cannabis sativa HOM05D007614 ORTHO05D009538 2.1e-45 186.4 201 53.2
Ciclev10004153m.g Citrus clementina HOM05D007614 ORTHO05D009538 2.1e-45 186.4 196 56.1
Lj3C822G9 Lonicera japonica HOM05D007614 ORTHO05D009538 6.2e-45 184.9 204 52.5
MBI19_g34788_MAGBIO Magnolia biondii HOM05D007614 ORTHO05D009538 6.2e-45 184.9 200 54.0
RcHm_v2.0_Chr4g0423071 Rosa chinensis HOM05D007614 ORTHO05D009538 3.1e-44 182.6 205 54.6
Gohir.D09G062000 Gossypium hirsutum HOM05D007614 ORTHO05D009538 4.0e-44 182.2 205 53.2
FAN17G0278 Fragaria x ananassa HOM05D007614 ORTHO05D009538 6.8e-44 181.4 208 53.4
Gohir.A09G063000 Gossypium hirsutum HOM05D007614 ORTHO05D009538 6.8e-44 181.4 208 53.4
Atru.chr6.1993 Acer truncatum HOM05D007614 ORTHO05D009538 1.2e-43 180.6 201 55.7
FvH4_4g18510 Fragaria vesca HOM05D007614 ORTHO05D009538 1.5e-43 180.3 208 52.9
Oeu006410.1 Olea europaea HOM05D007614 ORTHO05D009538 2.0e-43 179.9 203 51.2
PSO407G0339 Papaver somniferum HOM05D007614 ORTHO05D009538 5.8e-43 178.3 205 53.7
FAN12G0400 Fragaria x ananassa HOM05D007614 ORTHO05D009538 7.6e-43 177.9 209 51.7
FAN12G3001 Fragaria x ananassa HOM05D007614 ORTHO05D009538 9.9e-43 177.6 207 52.2
GSVIVG01035126001 Vitis vinifera HOM05D007614 ORTHO05D009538 1.7e-42 176.8 196 53.6
CDE01G0153 Ceratophyllum demersum HOM05D007614 ORTHO05D009538 3.8e-42 175.6 200 52.5
SGA_v2.0_scaffold67G22611 Striga asiatica HOM05D007614 ORTHO05D009538 1.1e-41 174.1 207 51.2
Gorai.006G076700 Gossypium raimondii HOM05D007614 ORTHO05D009538 1.9e-41 173.3 206 52.4
Sc13g0003320 Simmondsia chinensis HOM05D007614 ORTHO05D009538 1.9e-41 173.3 216 50.0
FAN07G2176 Fragaria x ananassa HOM05D007614 ORTHO05D009538 5.4e-41 171.8 216 50.5
CARHR182630 Cardamine hirsuta HOM05D007614 ORTHO05D009538 1.7e-39 166.8 234 47.9
DCAR_027058 Daucus carota HOM05D007614 ORTHO05D009538 3.0e-39 166.0 211 52.6
ATR0796G125 Amborella trichopoda HOM05D007614 ORTHO05D009538 8.7e-39 164.5 209 49.3
Nitab4.5_0002628g0040 Nicotiana tabacum HOM05D007614 ORTHO05D009538 2.5e-38 162.9 219 47.5
SalBow2G0719 Salvia bowleyana HOM05D007614 ORTHO05D009538 3.3e-38 162.5 145 61.4
BcaC03g17697 Brassica carinata HOM05D007614 ORTHO05D009538 4.3e-38 162.2 224 47.3
BolC2t11775H Brassica oleracea HOM05D007614 ORTHO05D009538 4.3e-38 162.2 224 47.3
Peaxi162Scf00065g01533 Petunia axillaris HOM05D007614 ORTHO05D009538 4.3e-38 162.2 221 48.0
Nitab4.5_0000513g0110 Nicotiana tabacum HOM05D007614 ORTHO05D009538 5.6e-38 161.8 217 47.0
C02p57050 Brassica napus HOM05D007614 ORTHO05D009538 9.6e-38 161.0 135 65.2
A02p37890 Brassica napus HOM05D007614 ORTHO05D009538 1.6e-37 160.2 222 48.6
THA.LOC104827336 Tarenaya hassleriana HOM05D007614 ORTHO05D009538 2.1e-37 159.8 216 46.8
AL8G22620 Arabidopsis lyrata HOM05D007614 ORTHO05D009538 2.8e-37 159.5 120 69.2
AT5G49110 Arabidopsis thaliana HOM05D007614 ORTHO05D009538 3.6e-37 159.1 120 69.2
Cc03_g01650 Coffea canephora HOM05D007614 ORTHO05D009538 4.8e-37 158.7 212 45.3
Cc01_g15100 Coffea canephora HOM05D007614 ORTHO05D009538 3.1e-36 156.0 212 45.3
Thhalv10003518m.g Eutrema salsugineum HOM05D007614 ORTHO05D009538 3.1e-36 156.0 175 54.9
SEGI_15090 Sequoiadendron giganteum HOM05D007614 ORTHO05D009538 2.6e-35 152.9 210 48.1
BcaB07g34217 Brassica carinata HOM05D007614 ORTHO05D009538 3.4e-35 152.5 161 56.5
HanXRQChr03g0089481 Helianthus annuus HOM05D007614 ORTHO05D009538 7.6e-35 151.4 133 57.1
ECA240G3304 Erigeron canadensis HOM05D007614 ORTHO05D009538 3.8e-34 149.1 132 59.1
BraA02t08773Z Brassica rapa HOM05D007614 ORTHO05D009538 3.2e-33 146.0 228 46.1
HPP92_013726 Vanilla planifolia HOM05D007614 ORTHO05D009538 7.1e-33 144.8 202 45.5
Solyc01g066610.4 Solanum lycopersicum HOM05D007614 ORTHO05D009538 2.7e-32 142.9 157 52.9
Sopen01g028150 Solanum pennellii HOM05D007614 ORTHO05D009538 2.7e-32 142.9 157 52.9
Lsat_1_v5_gn_6_96381 Lactuca sativa HOM05D007614 ORTHO05D009538 3.5e-32 142.5 201 45.8
CAN.G421.12 Capsicum annuum HOM05D007614 ORTHO05D009538 3.6e-29 132.5 183 45.4
AagrBONN_evm.TU.Sc2ySwM_344.1704 Anthoceros agrestis HOM05D007614 ORTHO05D009538 2.4e-28 129.8 172 48.8
AagrBONN_evm.TU.Sc2ySwM_344.1702 Anthoceros agrestis HOM05D007614 ORTHO05D009538 4.0e-28 129.0 149 51.7
Mapoly0051s0073 Marchantia polymorpha HOM05D007614 ORTHO05D009538 1.7e-26 123.6 118 58.5
Pp3c13_17960 Physcomitrium patens HOM05D007614 ORTHO05D009538 8.4e-26 121.3 221 41.2
Zm00001eb016350 Zea mays HOM05D007614 ORTHO05D009538 3.2e-25 119.4 233 37.8
BcaC03g17700 Brassica carinata HOM05D007614 ORTHO05D009538 8.7e-23 111.3 174 46.6
Os03g0341200 Oryza sativa ssp. japonica HOM05D007614 ORTHO05D009538 5.8e-19 98.6 167 41.9
Migut.G00137 Erythranthe guttata HOM05D007614 ORTHO05D009538 1.0e-18 97.8 199 38.2
CBR_g12376 Chara braunii HOM05D007614 ORTHO05D009538 3.8e-18 95.9 173 40.5
MSTRG.3900 Avicennia marina HOM05D007614 ORTHO05D009538 6.1e-08 62.0 55 50.9


User provided reference genes

Program Settings