Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B01586 Eucalyptus grandis HOM05D005167 ORTHO05D006312 1.6e-149 532.7 269 100.0
Eucgr.B01611 Eucalyptus grandis HOM05D005167 ORTHO05D006312 3.8e-66 255.8 137 94.2
CiPaw.15G107300 Carya illinoinensis HOM05D005167 ORTHO05D006312 1.6e-51 207.2 314 40.1
Prupe.4G287800 Prunus persica HOM05D005167 ORTHO05D006312 1.6e-51 207.2 297 44.1
CiPaw.15G107200 Carya illinoinensis HOM05D005167 ORTHO05D006312 5.9e-51 205.3 314 39.8
Thecc.07G187300 Theobroma cacao HOM05D005167 ORTHO05D006312 5.9e-51 205.3 306 39.5
GSVIVG01029417001 Vitis vinifera HOM05D005167 ORTHO05D006312 7.7e-51 204.9 286 41.6
Nn3g20631 Nelumbo nucifera HOM05D005167 ORTHO05D006312 1.7e-50 203.8 300 42.3
Cpa.g.sc15.42 Carica papaya HOM05D005167 ORTHO05D006312 2.2e-50 203.4 288 41.7
TAR629G0123 Trochodendron aralioides HOM05D005167 ORTHO05D006312 8.5e-50 201.4 292 42.1
Actinidia12290 Actinidia chinensis HOM05D005167 ORTHO05D006312 1.2e-46 191.0 316 37.7
Carub.0003s3540 Capsella rubella HOM05D005167 ORTHO05D006312 3.3e-46 189.5 292 41.8
Dinv01746 Davidia involucrata HOM05D005167 ORTHO05D006312 3.7e-45 186.0 357 36.7
Cc00_g01280 Coffea canephora HOM05D005167 ORTHO05D006312 6.3e-45 185.3 268 38.4
Lju225A7G63 Lonicera japonica HOM05D005167 ORTHO05D006312 8.2e-45 184.9 272 41.9
FAN26G1264 Fragaria x ananassa HOM05D005167 ORTHO05D006312 1.4e-44 184.1 304 41.4
Atru.chr9.69 Acer truncatum HOM05D005167 ORTHO05D006312 1.8e-44 183.7 274 41.6
Glyma.13G026000 Glycine max HOM05D005167 ORTHO05D006312 7.0e-44 181.8 294 39.1
Duzib116G0260 Durio zibethinus HOM05D005167 ORTHO05D006312 1.2e-43 181.0 298 38.3
FAN19G3173 Fragaria x ananassa HOM05D005167 ORTHO05D006312 1.2e-43 181.0 308 40.6
Phvul.L001673 Phaseolus vulgaris HOM05D005167 ORTHO05D006312 1.6e-43 180.6 271 40.2
BcaB03g16877 Brassica carinata HOM05D005167 ORTHO05D006312 5.9e-43 178.7 290 39.7
SpUn0422_0010 Schrenkiella parvula HOM05D005167 ORTHO05D006312 5.9e-43 178.7 289 40.1
CARHR046110 Cardamine hirsuta HOM05D005167 ORTHO05D006312 1.3e-42 177.6 288 39.2
TWI15G0790 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 1.7e-42 177.2 275 41.1
Gohir.D09G002700 Gossypium hirsutum HOM05D005167 ORTHO05D006312 5.0e-42 175.6 285 41.8
Aqoxy4G01544 Aquilegia oxysepala HOM05D005167 ORTHO05D006312 6.5e-42 175.3 284 37.0
Thhalv10028036m.g Eutrema salsugineum HOM05D005167 ORTHO05D006312 1.5e-41 174.1 290 39.0
Manes.18G143300 Manihot esculenta HOM05D005167 ORTHO05D006312 1.5e-41 174.1 312 36.5
Oeu000168.1 Olea europaea HOM05D005167 ORTHO05D006312 1.9e-41 173.7 311 39.5
C07p02160 Brassica napus HOM05D005167 ORTHO05D006312 2.5e-41 173.3 282 38.3
Lsat_1_v5_gn_8_167100 Lactuca sativa HOM05D005167 ORTHO05D006312 2.5e-41 173.3 283 38.5
Migut.N00879 Erythranthe guttata HOM05D005167 ORTHO05D006312 4.2e-41 172.6 318 37.4
Ciclev10030405m.g Citrus clementina HOM05D005167 ORTHO05D006312 7.2e-41 171.8 281 39.5
BolC7t40625H Brassica oleracea HOM05D005167 ORTHO05D006312 9.4e-41 171.4 282 38.3
Nn5g27095 Nelumbo nucifera HOM05D005167 ORTHO05D006312 1.2e-40 171.0 398 32.9
A03p66890 Brassica napus HOM05D005167 ORTHO05D006312 2.7e-40 169.9 282 37.9
BraA01t02792Z Brassica rapa HOM05D005167 ORTHO05D006312 2.7e-40 169.9 282 37.9
CANSAT64G2797 Cannabis sativa HOM05D005167 ORTHO05D006312 3.6e-40 169.5 294 38.8
ClCG04G000020 Citrullus lanatus HOM05D005167 ORTHO05D006312 4.7e-40 169.1 285 36.5
PGSC0003DMG400014526 Solanum tuberosum HOM05D005167 ORTHO05D006312 8.0e-40 168.3 267 38.6
ECA248G1565 Erigeron canadensis HOM05D005167 ORTHO05D006312 1.0e-39 167.9 362 35.4
Sed0010261 Sechium edule HOM05D005167 ORTHO05D006312 1.0e-39 167.9 286 39.2
PSO170G3824 Papaver somniferum HOM05D005167 ORTHO05D006312 4.0e-39 166.0 355 37.2
CAN.G989.3 Capsicum annuum HOM05D005167 ORTHO05D006312 5.2e-39 165.6 268 36.6
ClCG08G000010 Citrullus lanatus HOM05D005167 ORTHO05D006312 5.2e-39 165.6 286 36.7
MD00G1096100 Malus domestica HOM05D005167 ORTHO05D006312 6.8e-39 165.2 295 39.7
VMungo0540G0564 Vigna mungo HOM05D005167 ORTHO05D006312 2.0e-38 163.7 373 34.3
Phvul.006G133500 Phaseolus vulgaris HOM05D005167 ORTHO05D006312 3.4e-38 162.9 368 34.8
SGA_v2.0_scaffold401G50971 Striga asiatica HOM05D005167 ORTHO05D006312 3.4e-38 162.9 358 34.1
HPP92_025056 Vanilla planifolia HOM05D005167 ORTHO05D006312 4.4e-38 162.5 346 33.5
Cc02_g36800 Coffea canephora HOM05D005167 ORTHO05D006312 5.7e-38 162.2 376 34.8
HanXRQChr15g0488451 Helianthus annuus HOM05D005167 ORTHO05D006312 5.7e-38 162.2 326 37.7
SGA_v2.0_scaffold150G36624 Striga asiatica HOM05D005167 ORTHO05D006312 1.3e-37 161.0 282 36.9
MELO3C034515.2 Cucumis melo HOM05D005167 ORTHO05D006312 2.2e-37 160.2 323 35.3
Nitab4.5_0001246g0010 Nicotiana tabacum HOM05D005167 ORTHO05D006312 2.2e-37 160.2 283 36.4
arahy.Tifrunner.gnm1.ann1.JG47X3 Arachis hypogaea HOM05D005167 ORTHO05D006312 4.8e-37 159.1 372 33.6
Hma1.2p1_0052F.1_g030120 Hydrangea macrophylla HOM05D005167 ORTHO05D006312 4.8e-37 159.1 397 33.8
Nitab4.5_0005690g0020 Nicotiana tabacum HOM05D005167 ORTHO05D006312 4.8e-37 159.1 279 36.2
Hund15261 Selenicereus undatus HOM05D005167 ORTHO05D006312 4.8e-37 159.1 382 32.2
RcHm_v2.0_Chr3g0496761 Rosa chinensis HOM05D005167 ORTHO05D006312 1.4e-36 157.5 338 34.3
Lj9C241G5 Lonicera japonica HOM05D005167 ORTHO05D006312 1.8e-36 157.1 388 33.0
Sopen02g001190 Solanum pennellii HOM05D005167 ORTHO05D006312 1.8e-36 157.1 266 37.2
EL10Ac6g13938 Beta vulgaris HOM05D005167 ORTHO05D006312 4.1e-36 156.0 384 31.8
Nitab4.5_0007926g0020 Nicotiana tabacum HOM05D005167 ORTHO05D006312 7.0e-36 155.2 283 35.3
Ah.02g128610 Amaranthus hybridus HOM05D005167 ORTHO05D006312 9.1e-36 154.8 384 32.6
arahy.Tifrunner.gnm1.ann1.T4BBUF Arachis hypogaea HOM05D005167 ORTHO05D006312 2.0e-35 153.7 372 33.9
TWI31G1352 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 2.7e-35 153.3 201 44.3
Gorai.009G128100 Gossypium raimondii HOM05D005167 ORTHO05D006312 7.7e-35 151.8 346 35.0
Lj6g0014124 Lotus japonicus HOM05D005167 ORTHO05D006312 1.0e-34 151.4 384 33.6
Sc07g0003350 Simmondsia chinensis HOM05D005167 ORTHO05D006312 1.0e-34 151.4 348 33.3
Sc07g0003360 Simmondsia chinensis HOM05D005167 ORTHO05D006312 1.0e-34 151.4 348 33.3
Gohir.D05G124100 Gossypium hirsutum HOM05D005167 ORTHO05D006312 1.3e-34 151.0 339 35.1
Peaxi162Scf00194g00934 Petunia axillaris HOM05D005167 ORTHO05D006312 1.3e-34 151.0 388 32.0
Gohir.A05G123200 Gossypium hirsutum HOM05D005167 ORTHO05D006312 2.9e-34 149.8 337 35.9
SalBow3G4053 Salvia bowleyana HOM05D005167 ORTHO05D006312 2.9e-34 149.8 379 32.5
Os07g0657600 Oryza sativa ssp. japonica HOM05D005167 ORTHO05D006312 3.8e-34 149.4 368 31.5
Thecc.06G025200 Theobroma cacao HOM05D005167 ORTHO05D006312 8.6e-34 148.3 344 36.6
QL02p104239 Quercus lobata HOM05D005167 ORTHO05D006312 1.1e-33 147.9 367 32.7
PGSC0003DMG400018222 Solanum tuberosum HOM05D005167 ORTHO05D006312 1.1e-33 147.9 388 32.0
Manes.18G143000 Manihot esculenta HOM05D005167 ORTHO05D006312 2.5e-33 146.7 316 33.2
CAN.G1379.23 Capsicum annuum HOM05D005167 ORTHO05D006312 5.5e-33 145.6 389 32.1
Duzib160G0520 Durio zibethinus HOM05D005167 ORTHO05D006312 7.2e-33 145.2 347 35.2
Sopen01g045080 Solanum pennellii HOM05D005167 ORTHO05D006312 7.2e-33 145.2 389 31.6
ATR0782G113 Amborella trichopoda HOM05D005167 ORTHO05D006312 9.5e-33 144.8 381 30.7
Solyc01g102670.3 Solanum lycopersicum HOM05D005167 ORTHO05D006312 9.5e-33 144.8 389 31.9
BcaC08g44461 Brassica carinata HOM05D005167 ORTHO05D006312 1.2e-32 144.4 289 34.6
Glyma.09G018700 Glycine max HOM05D005167 ORTHO05D006312 1.2e-32 144.4 363 33.6
DCAR_029460 Daucus carota HOM05D005167 ORTHO05D006312 2.1e-32 143.7 397 31.7
Dinv24548 Davidia involucrata HOM05D000457 ORTHO05D000560 2.8e-32 143.3 406 31.8
BcaC06g36613 Brassica carinata HOM05D005167 ORTHO05D006312 1.8e-31 140.6 188 41.5
ECA234G3362 Erigeron canadensis HOM05D005167 ORTHO05D006312 1.8e-31 140.6 286 35.7
QL01p052835 Quercus lobata HOM05D005167 ORTHO05D006312 2.3e-31 140.2 143 54.5
CiPaw.09G096800 Carya illinoinensis HOM05D005167 ORTHO05D006312 6.8e-31 138.7 409 31.5
QL93p1868_0064 Quercus lobata HOM05D005167 ORTHO05D006312 6.8e-31 138.7 143 53.8
BcaC06g31947 Brassica carinata HOM05D005167 ORTHO05D006312 8.8e-31 138.3 177 42.9
Rhsim05G0120900 Rhododendron simsii HOM05D005167 ORTHO05D006312 8.8e-31 138.3 382 31.9
Ciclev10001110m.g Citrus clementina HOM05D005167 ORTHO05D006312 3.4e-30 136.3 378 32.3
Nitab4.5_0004176g0010 Nicotiana tabacum HOM05D005167 ORTHO05D006312 3.4e-30 136.3 389 30.6
Atru.chr6.56 Acer truncatum HOM05D005167 ORTHO05D006312 4.4e-30 136.0 387 32.3
Manes.06G015900 Manihot esculenta HOM05D005167 ORTHO05D006312 5.7e-30 135.6 395 30.4
Gohir.A09G002900 Gossypium hirsutum HOM05D005167 ORTHO05D006312 1.7e-29 134.0 193 43.0
PGR042G3689 Punica granatum HOM05D005167 ORTHO05D006312 2.2e-29 133.7 391 31.2
Gorai.006G003300 Gossypium raimondii HOM05D005167 ORTHO05D006312 2.8e-29 133.3 193 42.5
HanXRQChr12g0386151 Helianthus annuus HOM05D005167 ORTHO05D006312 1.1e-28 131.3 282 31.6
Nitab4.5_0001085g0040 Nicotiana tabacum HOM05D005167 ORTHO05D006312 2.4e-28 130.2 398 29.4
Haze_09951 Corylus avellana HOM05D005167 ORTHO05D006312 7.0e-28 128.6 405 30.9
CANSAT01G2096 Cannabis sativa HOM05D005167 ORTHO05D006312 2.7e-27 126.7 378 30.4
QL93p0255_0001 Quercus lobata HOM05D005167 ORTHO05D006312 4.5e-27 125.9 274 33.6
Lju225C0G3 Lonicera japonica HOM05D005167 ORTHO05D006312 7.8e-27 125.2 276 35.9
Potri.003G046300 Populus trichocarpa HOM05D005167 ORTHO05D006312 1.0e-26 124.8 401 30.4
C06p19120 Brassica napus HOM05D005167 ORTHO05D006312 5.0e-26 122.5 227 37.9
BolC6t37111H Brassica oleracea HOM05D005167 ORTHO05D006312 5.0e-26 122.5 227 37.9
vmacro19812 Vaccinium macrocarpon HOM05D005167 ORTHO05D006312 6.6e-26 122.1 380 30.3
TWI23G0323 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 5.6e-25 119.0 404 29.0
Gohir.D07G228750 Gossypium hirsutum HOM05D005167 ORTHO05D006312 3.0e-23 113.2 260 34.6
AUR62024866 Chenopodium quinoa HOM05D005167 ORTHO05D006312 5.2e-23 112.5 324 29.9
CDE02G1408 Ceratophyllum demersum HOM05D005167 ORTHO05D006312 6.8e-23 112.1 142 45.1
Gorai.001G263800 Gossypium raimondii HOM05D005167 ORTHO05D006312 3.7e-21 106.3 256 33.6
QL07p001518 Quercus lobata HOM05D005167 ORTHO05D006312 3.7e-21 106.3 211 36.5
Eucgr.G00036 Eucalyptus grandis HOM05D005167 ORTHO05D006312 2.4e-20 103.6 320 28.1
THA.LOC104809040 Tarenaya hassleriana HOM05D005167 ORTHO05D006312 5.4e-20 102.4 399 27.1
PGSC0003DMG400040448 Solanum tuberosum HOM05D005167 ORTHO05D006312 2.7e-19 100.1 141 42.6
FvH4_1g27954 Fragaria vesca HOM05D005167 ORTHO05D006312 2.3e-18 97.1 131 42.7
Actinidia01647 Actinidia chinensis HOM05D005167 ORTHO05D006312 1.1e-17 94.7 114 43.9
A07p01000 Brassica napus HOM05D005167 ORTHO05D006312 1.9e-17 94.0 140 41.4
Sabra03G0019800 Salix brachista HOM05D005167 ORTHO05D006312 2.5e-17 93.6 375 28.5
MBI17_g35115_MAGBIO Magnolia biondii HOM05D005167 ORTHO05D006312 3.3e-17 93.2 101 46.5
QL93p1868_0059 Quercus lobata HOM05D005167 ORTHO05D006312 3.3e-17 93.2 138 42.0
QL01p053234 Quercus lobata HOM05D005167 ORTHO05D006312 9.5e-17 91.7 113 45.1
Thhalv10028065m.g Eutrema salsugineum HOM05D005167 ORTHO05D006312 1.6e-16 90.9 140 40.7
SpUn0005_0090 Schrenkiella parvula HOM05D005167 ORTHO05D006312 2.1e-16 90.5 96 45.8
Oeu000169.3 Olea europaea HOM05D005167 ORTHO05D006312 4.7e-16 89.4 109 45.9
Atru.chr6.45 Acer truncatum HOM05D005167 ORTHO05D006312 6.2e-16 89.0 240 32.9
COL.COLO4_11943 Corchorus olitorius HOM05D005167 ORTHO05D006312 1.1e-15 88.2 102 43.1
CDE02G4394 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 8.9e-15 85.1 103 42.7
AUR62032503 Chenopodium quinoa HOM05D005167 ORTHO05D000001 4.4e-14 82.8 101 44.6
BcaC06g31946 Brassica carinata HOM05D005167 ORTHO05D006312 7.5e-14 82.0 175 30.3
Atru.chr9.63 Acer truncatum HOM05D005167 ORTHO05D006312 6.4e-13 79.0 102 41.2
Aqoxy4G01501 Aquilegia oxysepala HOM05D005167 ORTHO05D006312 3.2e-12 76.6 142 35.2
Nn2g11162 Nelumbo nucifera HOM05D000080 ORTHO05D000053 3.9e-10 69.7 42 73.8
HanXRQChr12g0378911 Helianthus annuus HOM05D005167 ORTHO05D006312 3.1e-07 60.1 76 35.5


User provided reference genes

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