Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B01580 Eucalyptus grandis HOM05D004639 ORTHO05D005201 3.2e-245 851.7 546 100.0
PGR031G3121 Punica granatum HOM05D004639 ORTHO05D005201 7.5e-61 239.2 159 69.2
Ah.05g167280 Amaranthus hybridus HOM05D001485 ORTHO05D001407 1.7e-52 211.5 178 60.1
Cc00_g06760 Coffea canephora HOM05D004639 ORTHO05D005201 2.8e-52 210.7 175 60.6
Atru.chr9.65 Acer truncatum HOM05D004639 ORTHO05D005201 2.4e-51 207.6 156 62.8
Prupe.4G286600 Prunus persica HOM05D004639 ORTHO05D005201 1.2e-50 205.3 182 54.4
CANSAT64G1383 Cannabis sativa HOM05D004639 ORTHO05D005201 2.0e-50 204.5 151 66.9
CANSAT64G2443 Cannabis sativa HOM05D004639 ORTHO05D005201 2.0e-50 204.5 151 66.9
Ciclev10028470m.g Citrus clementina HOM05D004639 ORTHO05D005201 2.0e-50 204.5 152 65.1
Aqoxy4G01839 Aquilegia oxysepala HOM05D004639 ORTHO05D005201 3.5e-50 203.8 190 53.7
AUR62017756 Chenopodium quinoa HOM05D004639 ORTHO05D005201 3.5e-50 203.8 154 61.0
MD00G1164900 Malus domestica HOM05D004639 ORTHO05D005201 3.5e-50 203.8 164 58.5
Nitab4.5_0010824g0010 Nicotiana tabacum HOM05D004639 ORTHO05D005201 3.5e-50 203.8 178 56.7
PSO384G4518 Papaver somniferum HOM05D004639 ORTHO05D005201 3.5e-50 203.8 187 55.6
PSO493G0020 Papaver somniferum HOM05D004639 ORTHO05D005201 3.5e-50 203.8 187 55.6
BraA07t27872Z Brassica rapa HOM05D004639 ORTHO05D005201 5.9e-50 203.0 168 58.9
Thhalv10020704m.g Eutrema salsugineum HOM05D004639 ORTHO05D005201 5.9e-50 203.0 181 56.9
Peaxi162Scf00331g00311 Petunia axillaris HOM05D004639 ORTHO05D005201 5.9e-50 203.0 156 62.2
GSVIVG01003641001 Vitis vinifera HOM05D004639 ORTHO05D005201 5.9e-50 203.0 144 63.9
CANSAT64G2852 Cannabis sativa HOM05D004639 ORTHO05D005201 7.8e-50 202.6 152 66.4
Carub.0003s0750 Capsella rubella HOM05D004639 ORTHO05D005201 1.0e-49 202.2 181 55.8
Rhsim11G0007200 Rhododendron simsii HOM05D004639 ORTHO05D005201 1.0e-49 202.2 202 54.5
Cpa.g.sc15.68 Carica papaya HOM05D004639 ORTHO05D005201 1.3e-49 201.8 183 56.3
C07p01740 Brassica napus HOM05D004639 ORTHO05D005201 1.7e-49 201.4 168 58.9
BolC7t40577H Brassica oleracea HOM05D004639 ORTHO05D005201 1.7e-49 201.4 168 58.9
QL01p053168 Quercus lobata HOM05D004639 ORTHO05D005201 1.7e-49 201.4 189 55.6
AL3G19300 Arabidopsis lyrata HOM05D004639 ORTHO05D005201 5.0e-49 199.9 168 58.9
A07p00740 Brassica napus HOM05D004639 ORTHO05D005201 5.0e-49 199.9 168 58.3
Oeu061992.1 Olea europaea HOM05D004639 ORTHO05D005201 6.6e-49 199.5 174 56.9
Phvul.L000400 Phaseolus vulgaris HOM05D004639 ORTHO05D005201 6.6e-49 199.5 160 59.4
Thecc.04G056700 Theobroma cacao HOM05D004639 ORTHO05D005201 6.6e-49 199.5 158 62.0
Actinidia23035 Actinidia chinensis HOM05D004639 ORTHO05D005201 8.6e-49 199.1 177 55.4
QL01p053770 Quercus lobata HOM05D004639 ORTHO05D005201 8.6e-49 199.1 182 56.0
Hma1.2p1_1077F.1_g254710 Hydrangea macrophylla HOM05D004639 ORTHO05D005201 1.1e-48 198.7 163 61.3
Manes.18G143900 Manihot esculenta HOM05D004639 ORTHO05D005201 1.1e-48 198.7 153 60.8
Sp3g06840 Schrenkiella parvula HOM05D004639 ORTHO05D005201 1.5e-48 198.4 177 56.5
ATR0068G005 Amborella trichopoda HOM05D004639 ORTHO05D005201 1.9e-48 198.0 174 54.0
Nitab4.5_0001799g0030 Nicotiana tabacum HOM05D004639 ORTHO05D005201 1.9e-48 198.0 174 56.9
THA.LOC104805811 Tarenaya hassleriana HOM05D004639 ORTHO05D005201 1.9e-48 198.0 173 56.1
BcaB04g16901 Brassica carinata HOM05D004639 ORTHO05D005201 2.5e-48 197.6 168 58.3
Gorai.006G008100 Gossypium raimondii HOM05D004639 ORTHO05D005201 2.5e-48 197.6 154 62.3
vmacro04281 Vaccinium macrocarpon HOM05D004639 ORTHO05D005201 2.5e-48 197.6 171 57.9
arahy.Tifrunner.gnm1.ann1.CP937L Arachis hypogaea HOM05D004639 ORTHO05D005201 4.3e-48 196.8 173 56.6
arahy.Tifrunner.gnm1.ann1.GWL1KB Arachis hypogaea HOM05D004639 ORTHO05D005201 4.3e-48 196.8 173 56.6
Gohir.A09G007300 Gossypium hirsutum HOM05D004639 ORTHO05D005201 4.3e-48 196.8 154 62.3
Lj2g0020909 Lotus japonicus HOM05D004639 ORTHO05D005201 4.3e-48 196.8 175 55.4
Dinv01634 Davidia involucrata HOM05D004639 ORTHO05D005201 7.3e-48 196.1 190 53.7
TAR376G0371 Trochodendron aralioides HOM05D004639 ORTHO05D005201 7.3e-48 196.1 162 59.3
vmacro22429 Vaccinium macrocarpon HOM05D004639 ORTHO05D005201 7.3e-48 196.1 171 57.9
FAN19G3130 Fragaria x ananassa HOM05D004639 ORTHO05D005201 1.2e-47 195.3 183 54.1
Gohir.D09G006600 Gossypium hirsutum HOM05D004639 ORTHO05D005201 1.2e-47 195.3 154 61.7
FvH4_1g27870 Fragaria vesca HOM05D004639 ORTHO05D005201 2.1e-47 194.5 183 54.1
FAN26G1776 Fragaria x ananassa HOM05D004639 ORTHO05D005201 2.1e-47 194.5 183 54.1
CAN.G989.2 Capsicum annuum HOM05D004639 ORTHO05D005201 3.6e-47 193.7 182 53.3
Glyma.13G009500 Glycine max HOM05D004639 ORTHO05D005201 3.6e-47 193.7 160 58.1
EL10As7g23724 Beta vulgaris HOM05D004639 ORTHO05D005201 4.7e-47 193.4 181 56.4
VMungo0540G1855 Vigna mungo HOM05D004639 ORTHO05D005201 4.7e-47 193.4 165 55.8
Aa31LG5G18470 Aethionema arabicum HOM05D004639 ORTHO05D005201 1.0e-46 192.2 177 53.7
Solyc02g021100.3 Solanum lycopersicum HOM05D004639 ORTHO05D005201 1.0e-46 192.2 152 57.2
ClCG08G005050 Citrullus lanatus HOM05D004639 ORTHO05D005201 1.4e-46 191.8 198 52.0
MELO3C022885.2 Cucumis melo HOM05D004639 ORTHO05D005201 1.8e-46 191.4 198 51.5
MBI03_g13041_MAGBIO Magnolia biondii HOM05D004639 ORTHO05D005201 1.8e-46 191.4 184 54.3
RcHm_v2.0_Chr3g0497491 Rosa chinensis HOM05D004639 ORTHO05D005201 2.3e-46 191.0 182 53.3
Sopen02g005400 Solanum pennellii HOM05D004639 ORTHO05D005201 2.3e-46 191.0 152 57.2
SalBow6G0181 Salvia bowleyana HOM05D004639 ORTHO05D005201 5.2e-46 189.9 187 54.5
SalBow6G5700 Salvia bowleyana HOM05D004639 ORTHO05D005201 5.2e-46 189.9 187 54.5
Lsat_1_v5_gn_3_140620 Lactuca sativa HOM05D004639 ORTHO05D005201 1.2e-45 188.7 156 54.5
TWI15G1026 Tripterygium wilfordii HOM05D004639 ORTHO05D005201 1.2e-45 188.7 160 55.6
Nn5g27169 Nelumbo nucifera HOM05D004639 ORTHO05D005201 1.5e-45 188.3 155 58.1
SEGI_27362 Sequoiadendron giganteum HOM05D004639 ORTHO05D005201 1.5e-45 188.3 145 60.7
Medtr0037s0250 Medicago truncatula HOM05D004639 ORTHO05D005201 2.0e-45 188.0 185 52.4
TWI31G0951 Tripterygium wilfordii HOM05D004639 ORTHO05D005201 7.5e-45 186.0 160 55.6
MSTRG.8994 Avicennia marina HOM05D004639 ORTHO05D005201 1.3e-44 185.3 164 55.5
Lj2g0022882 Lotus japonicus HOM05D004639 ORTHO05D005201 2.2e-44 184.5 151 58.9
Migut.A01100 Erythranthe guttata HOM05D004639 ORTHO05D005201 2.9e-44 184.1 171 53.8
CsaV3_5G037160 Cucumis sativus L. HOM05D004639 ORTHO05D005201 4.9e-44 183.3 198 50.0
SGA_v2.0_scaffold291G47333 Striga asiatica HOM05D004639 ORTHO05D005201 6.4e-44 183.0 164 54.9
DCAR_016067 Daucus carota HOM05D004639 ORTHO05D005201 8.3e-44 182.6 170 51.8
Hund25534 Selenicereus undatus HOM05D004639 ORTHO05D005201 1.4e-43 181.8 162 59.3
ECA234G0087 Erigeron canadensis HOM05D004639 ORTHO05D005201 1.6e-42 178.3 161 50.9
SHI25031 Sapria himalayana HOM05D004639 ORTHO05D005201 1.6e-42 178.3 144 56.9
HPP92_007024 Vanilla planifolia HOM05D004639 ORTHO05D005201 3.5e-42 177.2 166 54.8
HanXRQChr12g0386021 Helianthus annuus HOM05D004639 ORTHO05D005201 4.6e-42 176.8 141 55.3
Potri.012G037700 Populus trichocarpa HOM05D004639 ORTHO05D005201 6.0e-42 176.4 144 57.6
Lalb_Chr00c23g0406301 Lupinus albus HOM05D004639 ORTHO05D005201 1.7e-41 174.9 153 54.9
Sabra12G0026100 Salix brachista HOM05D004639 ORTHO05D005201 2.3e-41 174.5 170 52.4
HanXRQChr16g0532761 Helianthus annuus HOM05D004639 ORTHO05D005201 6.6e-41 172.9 141 53.9
CiPaw.15G093500 Carya illinoinensis HOM05D004639 ORTHO05D005201 8.6e-41 172.6 165 53.9
ECA234G3785 Erigeron canadensis HOM05D004639 ORTHO05D005201 8.6e-41 172.6 167 47.9
Potri.014G189400 Populus trichocarpa HOM05D004639 ORTHO05D005201 3.3e-40 170.6 183 50.3
Sabra19G0060900 Salix brachista HOM05D004639 ORTHO05D005201 4.3e-40 170.2 170 51.8
Sabra19G0061000 Salix brachista HOM05D004639 ORTHO05D005201 4.3e-40 170.2 170 51.8
SabraUnG0000100 Salix brachista HOM05D004639 ORTHO05D005201 4.3e-40 170.2 170 51.8
SabraUnG0000200 Salix brachista HOM05D004639 ORTHO05D005201 4.3e-40 170.2 170 51.8
AUR62032895 Chenopodium quinoa HOM05D004639 ORTHO05D005201 7.3e-40 169.5 184 50.5
Potri.014G187300 Populus trichocarpa HOM05D004639 ORTHO05D005201 7.3e-40 169.5 152 53.9
Potri.014G187000 Populus trichocarpa HOM05D004639 ORTHO05D005201 1.2e-39 168.7 152 53.9
HPP92_007076 Vanilla planifolia HOM05D004639 ORTHO05D005201 4.7e-39 166.8 149 57.0
Os09g0101100 Oryza sativa ssp. japonica HOM05D004639 ORTHO05D005201 8.0e-39 166.0 171 49.1
Medtr0037s0060 Medicago truncatula HOM05D004639 ORTHO05D005201 2.3e-38 164.5 193 46.1
BcaC08g44553 Brassica carinata HOM05D004639 ORTHO05D005201 2.0e-37 161.4 156 55.1
Sabra19G0060700 Salix brachista HOM05D004639 ORTHO05D005201 2.6e-37 161.0 146 52.7
Zm00001eb264110 Zea mays HOM05D004639 ORTHO05D005201 2.2e-36 157.9 186 46.2
Mapoly0049s0024 Marchantia polymorpha HOM05D004639 ORTHO05D005201 1.4e-35 155.2 203 40.4
Duzib235G0802 Durio zibethinus HOM05D004639 ORTHO05D005201 2.4e-35 154.5 121 62.8
CDE02G2478 Ceratophyllum demersum HOM05D004639 ORTHO05D005201 7.8e-34 149.4 181 47.0
BcaC06g36658 Brassica carinata HOM05D004639 ORTHO05D005201 1.3e-33 148.7 136 55.9
CBR_g51322 Chara braunii HOM05D004639 ORTHO05D005201 1.7e-33 148.3 133 51.1
Lj2g0018447 Lotus japonicus HOM05D004639 ORTHO05D005201 3.0e-33 147.5 191 41.4
Pp3c15_4380 Physcomitrium patens HOM05D004639 ORTHO05D005201 3.0e-33 147.5 131 51.1
unitig_22.g6364 Utricularia gibba HOM05D004639 ORTHO05D005201 1.6e-31 141.7 136 52.9
PRCOL_00006916 Prasinoderma coloniale HOM05D004639 ORTHO05D005201 4.7e-31 140.2 134 49.3
Sc22g0004560 Simmondsia chinensis HOM05D004639 ORTHO05D005201 4.7e-31 140.2 153 49.0
Nitab4.5_0000843g0080 Nicotiana tabacum HOM05D004639 ORTHO05D005201 6.2e-31 139.8 141 51.8
Potri.014G187766 Populus trichocarpa HOM05D004639 ORTHO05D005201 8.1e-31 139.4 183 44.8
SMO334G0025 Selaginella moellendorffii HOM05D004639 ORTHO05D005201 1.1e-30 139.0 133 48.1
Sabra19G0060200 Salix brachista HOM05D004639 ORTHO05D005201 6.8e-30 136.3 171 45.6
QL01p052883 Quercus lobata HOM05D011240 ORTHO05D005201 1.3e-28 132.1 97 64.9
Sed0017627 Sechium edule HOM05D004639 ORTHO05D005201 2.2e-28 131.3 153 47.1
CARHR082670 Cardamine hirsuta HOM05D004639 ORTHO05D005201 8.3e-28 129.4 98 61.2
C06p20180 Brassica napus HOM05D004639 ORTHO05D005201 7.1e-27 126.3 171 43.3
BolC6t37199H Brassica oleracea HOM05D004639 ORTHO05D005201 7.1e-27 126.3 171 43.3
Dinv08242 Davidia involucrata HOM05D004639 ORTHO05D005201 1.7e-25 121.7 93 58.1
Lalb_Chr18g0049251 Lupinus albus HOM05D004639 ORTHO05D005201 1.7e-25 121.7 99 54.5
Cre05.g234250 Chlamydomonas reinhardtii HOM05D004639 ORTHO05D005201 3.0e-25 120.9 161 41.0
Lalb_Chr00c55g0413711 Lupinus albus HOM05D004639 ORTHO05D005201 6.6e-25 119.8 94 56.4
TPR.G9531 Trifolium pratense HOM05D004639 ORTHO05D005201 8.6e-25 119.4 98 54.1
HPP92_015991 Vanilla planifolia HOM05D004639 ORTHO05D005201 4.7e-23 113.6 108 53.7
CBR_g37349 Chara braunii HOM05D000004 ORTHO05D000002 6.8e-22 109.8 116 46.6
COL.COLO4_05916 Corchorus olitorius HOM05D004639 ORTHO05D005201 3.8e-20 104.0 124 46.0
Gohir.D02G140450 Gossypium hirsutum HOM05D004639 ORTHO05D005201 4.9e-20 103.6 69 68.1
Gorai.005G156200 Gossypium raimondii HOM05D004639 ORTHO05D005201 1.6e-18 98.6 69 65.2
QL93p0107_0438 Quercus lobata HOM05D004639 ORTHO05D005201 2.1e-18 98.2 56 73.2
Sabra19G0060300 Salix brachista HOM05D004639 ORTHO05D005201 6.6e-17 93.2 82 56.1
Sabra19G0060600 Salix brachista HOM05D004639 ORTHO05D005201 1.4e-14 85.5 88 53.4
Haze_08020 Corylus avellana HOM05D004639 ORTHO05D005201 6.9e-14 83.2 89 52.8
TPR.G22982 Trifolium pratense HOM05D004639 ORTHO05D005201 1.2e-13 82.4 100 47.0
CARHR082660 Cardamine hirsuta HOM05D004639 ORTHO05D005201 1.5e-13 82.0 55 65.5
CSS0047186 Camellia sinensis var. sinensis HOM05D004639 ORTHO05D005201 4.4e-13 80.5 69 55.1
CSS0021628 Camellia sinensis var. sinensis HOM05D004639 ORTHO05D005201 2.2e-12 78.2 78 53.8
QL01p054228 Quercus lobata HOM05D004639 ORTHO05D005201 1.1e-11 75.9 85 50.6
QL02p058806 Quercus lobata HOM05D004639 ORTHO05D005201 4.2e-11 73.9 85 49.4
AT3G07930 Arabidopsis thaliana HOM05D004639 ORTHO05D005201 2.7e-10 71.2 77 49.4
Psat1g014800 Pisum sativum HOM05D004639 ORTHO05D005201 1.0e-09 69.3 52 59.6
Medtr6g034730 Medicago truncatula HOM05D004639 ORTHO05D005201 1.1e-08 65.9 63 47.6
MCO02G309 Micromonas commoda HOM05D004639 ORTHO05D005201 3.3e-08 64.3 166 30.1
FAN23G0569 Fragaria x ananassa HOM05D004639 ORTHO05D005201 3.6e-07 60.8 53 56.6
Lalb_Chr18g0049241 Lupinus albus HOM05D004639 ORTHO05D005201 8.1e-07 59.7 55 56.4
unitig_22.g6365 Utricularia gibba HOM05D004639 ORTHO05D005201 1.8e-06 58.5 32 68.8
MCO10G304 Micromonas commoda HOM05D046594 ORTHO05D005201 4.0e-06 57.4 88 36.4
Medtr6g033105 Medicago truncatula HOM05D004639 ORTHO05D005201 5.3e-06 57.0 89 39.3


User provided reference genes

Program Settings