Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B01571 Eucalyptus grandis HOM05D007152 ORTHO05D008912 5.4e-88 327.8 184 100.0
Dinv44343 Davidia involucrata HOM05D007152 ORTHO05D008912 2.0e-26 123.2 188 49.5
Thecc.04G290300 Theobroma cacao HOM05D007152 ORTHO05D008912 1.3e-25 120.6 201 44.8
Gohir.D10G173100 Gossypium hirsutum HOM05D007152 ORTHO05D008912 7.2e-24 114.8 203 45.3
Gorai.011G193700 Gossypium raimondii HOM05D007152 ORTHO05D008912 1.2e-23 114.0 203 44.8
Gohir.A10G167100 Gossypium hirsutum HOM05D007152 ORTHO05D008912 1.1e-21 107.5 203 44.3
Manes.03G199400 Manihot esculenta HOM05D007152 ORTHO05D008912 2.5e-21 106.3 184 46.2
QL06p010801 Quercus lobata HOM05D007152 ORTHO05D008912 2.5e-21 106.3 181 47.5
Haze_01149 Corylus avellana HOM05D007152 ORTHO05D008912 3.3e-21 105.9 186 47.3
Duzib212G0417 Durio zibethinus HOM05D007152 ORTHO05D008912 3.3e-21 105.9 203 41.9
PGSC0003DMG400017287 Solanum tuberosum HOM05D007152 ORTHO05D008912 4.3e-21 105.5 202 43.1
CsaV3_6G022730 Cucumis sativus L. HOM05D007152 ORTHO05D008912 5.7e-21 105.1 146 51.4
GSVIVG01035097001 Vitis vinifera HOM05D007152 ORTHO05D008912 7.4e-21 104.8 203 46.8
CiPaw.02G079300 Carya illinoinensis HOM05D007152 ORTHO05D008912 3.7e-20 102.4 182 46.7
MELO3C021305.2 Cucumis melo HOM05D007152 ORTHO05D008912 1.8e-19 100.1 202 43.6
Hma1.2p1_1352F.1_g277500 Hydrangea macrophylla HOM05D007152 ORTHO05D008912 1.8e-19 100.1 146 48.6
MBI18_g04558_MAGBIO Magnolia biondii HOM05D000387 ORTHO05D008912 1.8e-19 100.1 177 43.5
Atru.chr4.2916 Acer truncatum HOM05D007152 ORTHO05D008912 2.4e-19 99.8 184 44.0
Nitab4.5_0007965g0010 Nicotiana tabacum HOM05D007152 ORTHO05D008912 3.1e-19 99.4 197 44.2
CANSAT78G0935 Cannabis sativa HOM05D007152 ORTHO05D008912 5.3e-19 98.6 153 49.0
ClCG06G004920 Citrullus lanatus HOM05D007152 ORTHO05D008912 5.3e-19 98.6 145 49.0
CiPaw.01G144800 Carya illinoinensis HOM05D007152 ORTHO05D008912 1.2e-18 97.4 188 47.3
Glyma.17G029000 Glycine max HOM05D007152 ORTHO05D008912 1.2e-18 97.4 183 46.4
Lj4g0009216 Lotus japonicus HOM05D007152 ORTHO05D008912 1.2e-18 97.4 146 49.3
PGR004G0508 Punica granatum HOM05D007152 ORTHO05D008912 2.6e-18 96.3 190 44.2
THA.LOC104818902 Tarenaya hassleriana HOM05D007152 ORTHO05D008912 2.6e-18 96.3 200 38.5
TWI73G1002 Tripterygium wilfordii HOM05D007152 ORTHO05D008912 2.6e-18 96.3 203 43.8
TAR362G0707 Trochodendron aralioides HOM05D007152 ORTHO05D008912 2.6e-18 96.3 194 43.3
Glyma.07G244800 Glycine max HOM05D007152 ORTHO05D008912 4.5e-18 95.5 180 46.7
Cc03_g01440 Coffea canephora HOM05D007152 ORTHO05D008912 1.0e-17 94.4 148 52.7
VMungo1215G1115 Vigna mungo HOM05D007152 ORTHO05D008912 1.3e-17 94.0 150 52.0
Sabra10G0005500 Salix brachista HOM05D007152 ORTHO05D008912 8.5e-17 91.3 79 59.5
FAN17G1647 Fragaria x ananassa HOM05D007152 ORTHO05D008912 1.1e-16 90.9 182 48.9
Manes.15G009801 Manihot esculenta HOM05D007152 ORTHO05D008912 1.1e-16 90.9 93 54.8
Potri.010G006600 Populus trichocarpa HOM05D007152 ORTHO05D008912 1.1e-16 90.9 75 58.7
Duzib151G0510 Durio zibethinus HOM05D007152 ORTHO05D008912 1.4e-16 90.5 202 44.1
Phvul.003G108000 Phaseolus vulgaris HOM05D007152 ORTHO05D008912 4.2e-16 89.0 185 45.9
Nn6g34202 Nelumbo nucifera HOM05D007152 ORTHO05D008912 5.5e-16 88.6 196 41.8
Aqoxy2G02883 Aquilegia oxysepala HOM05D007152 ORTHO05D008912 9.4e-16 87.8 186 43.0
Eucgr.H03966 Eucalyptus grandis HOM05D007152 ORTHO05D008912 9.4e-16 87.8 199 46.2
Actinidia14275 Actinidia chinensis HOM05D007152 ORTHO05D008912 1.2e-15 87.4 162 46.3
FvH4_4g18790 Fragaria vesca HOM05D007152 ORTHO05D008912 1.2e-15 87.4 191 47.6
FAN12G2857 Fragaria x ananassa HOM05D007152 ORTHO05D008912 1.2e-15 87.4 191 47.6
Prupe.1G130200 Prunus persica HOM05D007152 ORTHO05D008912 1.2e-15 87.4 195 45.1
RcHm_v2.0_Chr4g0423591 Rosa chinensis HOM05D007152 ORTHO05D008912 1.2e-15 87.4 148 53.4
Peaxi162Scf00065g10111 Petunia axillaris HOM05D007152 ORTHO05D008912 1.6e-15 87.0 193 42.0
FAN12G4239 Fragaria x ananassa HOM05D007152 ORTHO05D008912 2.7e-15 86.3 191 47.1
MD16G1162700 Malus domestica HOM05D007152 ORTHO05D008912 2.3e-14 83.2 195 45.6
Sc13g0003130 Simmondsia chinensis HOM05D007152 ORTHO05D008912 2.3e-14 83.2 148 50.0
FAN07G1963 Fragaria x ananassa HOM05D007152 ORTHO05D008912 3.0e-14 82.8 186 46.8
COL.COLO4_13806 Corchorus olitorius HOM05D007152 ORTHO05D008912 5.1e-14 82.0 194 35.1
Migut.G00085 Erythranthe guttata HOM05D007152 ORTHO05D008912 6.7e-14 81.6 189 40.2
Aa31LG5G17390 Aethionema arabicum HOM05D007152 ORTHO05D008912 1.1e-13 80.9 179 42.5
Migut.G00124 Erythranthe guttata HOM05D007152 ORTHO05D008912 2.0e-13 80.1 187 38.0
Nn2g11629 Nelumbo nucifera HOM05D000191 ORTHO05D000122 2.6e-13 79.7 136 38.2
SalBow2G3473 Salvia bowleyana HOM05D007152 ORTHO05D008912 3.3e-13 79.3 190 38.4
Lalb_Chr12g0201151 Lupinus albus HOM05D007152 ORTHO05D008912 9.7e-13 77.8 180 40.0
Carub.0003s0633 Capsella rubella HOM05D007152 ORTHO05D008912 1.3e-12 77.4 167 47.3
Cfa015435 Carpinus fangiana HOM05D007152 ORTHO05D008912 2.8e-12 76.3 186 43.0
Actinidia13384 Actinidia chinensis HOM05D007152 ORTHO05D008912 4.8e-12 75.5 162 46.9
Potri.008G211000 Populus trichocarpa HOM05D007152 ORTHO05D008912 4.8e-12 75.5 143 46.9
Sopen07g029030 Solanum pennellii HOM05D007152 ORTHO05D008912 4.8e-12 75.5 201 38.8
CSS0046950 Camellia sinensis var. sinensis HOM05D007152 ORTHO05D008912 1.1e-11 74.3 190 43.2
CSS0044056 Camellia sinensis var. sinensis HOM05D007152 ORTHO05D008912 1.4e-11 73.9 190 43.2
CARHR081420 Cardamine hirsuta HOM05D007152 ORTHO05D008912 1.4e-11 73.9 144 45.1
Ciclev10006039m.g Citrus clementina HOM05D007152 ORTHO05D008912 1.8e-11 73.6 178 41.6
C05p60530 Brassica napus HOM05D007152 ORTHO05D008912 2.4e-11 73.2 184 41.8
BolC5t34707H Brassica oleracea HOM05D007152 ORTHO05D008912 2.4e-11 73.2 184 41.8
Eucgr.G02139 Eucalyptus grandis HOM05D007152 ORTHO05D008912 2.4e-11 73.2 109 53.2
Ca_21475_v3 Cicer arietinum L. HOM05D007152 ORTHO05D008912 4.1e-11 72.4 152 47.4
AT3G06780 Arabidopsis thaliana HOM05D007152 ORTHO05D008912 1.2e-10 70.9 162 47.5
Eucgr.G02132 Eucalyptus grandis HOM05D007152 ORTHO05D008912 2.0e-10 70.1 72 55.6
Sabra08G0151100 Salix brachista HOM05D007152 ORTHO05D008912 2.0e-10 70.1 62 54.8
Lsat_1_v5_gn_3_21801 Lactuca sativa HOM05D007152 ORTHO05D008912 1.0e-09 67.8 175 40.6
AL3G17910 Arabidopsis lyrata HOM05D007152 ORTHO05D008912 2.2e-09 66.6 167 45.5
BNapus_Darmor_BZH_scaffold_117p00080 Brassica napus HOM05D007152 ORTHO05D008912 2.2e-09 66.6 132 47.0
Medtr4g120400 Medicago truncatula HOM05D007152 ORTHO05D008912 3.8e-09 65.9 178 42.1
Lalb_Chr20g0121161 Lupinus albus HOM05D007152 ORTHO05D008912 1.1e-08 64.3 149 41.6
SGA_v2.0_scaffold18G08363 Striga asiatica HOM05D007152 ORTHO05D008912 1.1e-08 64.3 150 42.0
PSO407G0318 Papaver somniferum HOM05D007152 ORTHO05D008912 1.5e-08 63.9 150 38.7
Thhalv10022432m.g Eutrema salsugineum HOM05D007152 ORTHO05D008912 1.9e-08 63.5 144 45.1
A05p41300 Brassica napus HOM05D007152 ORTHO05D008912 2.5e-08 63.2 151 43.0
BraA05t22853Z Brassica rapa HOM05D007152 ORTHO05D008912 2.5e-08 63.2 151 43.0
Nn4g25735 Nelumbo nucifera HOM05D007152 ORTHO05D008912 3.2e-08 62.8 152 38.2
ATR0693G346 Amborella trichopoda HOM05D007152 ORTHO05D008912 5.5e-08 62.0 158 36.7
EL10Ac3g06653 Beta vulgaris HOM05D007152 ORTHO05D008912 5.5e-08 62.0 145 47.6
DCAR_027047 Daucus carota HOM05D007152 ORTHO05D008912 7.2e-08 61.6 144 45.8
ECA246G2204 Erigeron canadensis HOM05D007152 ORTHO05D008912 7.2e-08 61.6 146 36.3
Sed0011406 Sechium edule HOM05D007152 ORTHO05D008912 7.2e-08 61.6 192 39.6
Solyc07g055660.2 Solanum lycopersicum HOM05D007152 ORTHO05D008912 7.2e-08 61.6 197 28.9
Nitab4.5_0000306g0360 Nicotiana tabacum HOM05D007152 ORTHO05D008912 9.4e-08 61.2 180 40.0
BraA01t04415Z Brassica rapa HOM05D007152 ORTHO05D008912 2.7e-07 59.7 129 43.4
BolC3t16516H Brassica oleracea HOM05D007152 ORTHO05D008912 4.7e-07 58.9 169 34.3
Ah.04g153700 Amaranthus hybridus HOM05D007152 ORTHO05D008912 1.4e-06 57.4 139 39.6
C03p42450 Brassica napus HOM05D007152 ORTHO05D008912 2.3e-06 56.6 165 34.5
Lsat_1_v5_gn_6_76040 Lactuca sativa HOM05D007152 ORTHO05D008912 2.3e-06 56.6 157 41.4


User provided reference genes

Program Settings