Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B01552 Eucalyptus grandis HOM05D004208 ORTHO05D005156 4.9e-255 884.0 460 100.0
Eucgr.G01944 Eucalyptus grandis HOM05D004208 ORTHO05D005156 2.5e-195 685.6 433 85.9
PGR031G1029 Punica granatum HOM05D004208 ORTHO05D005156 2.6e-171 605.9 508 65.0
CiPaw.11G131900 Carya illinoinensis HOM05D004208 ORTHO05D005156 1.6e-157 560.1 462 65.2
Cfa012194 Carpinus fangiana HOM05D004208 ORTHO05D005156 2.1e-157 559.7 465 64.7
Thecc.01G258100 Theobroma cacao HOM05D004208 ORTHO05D005156 8.0e-157 557.8 507 61.5
Gohir.A08G190100 Gossypium hirsutum HOM05D004208 ORTHO05D005156 2.3e-156 556.2 507 62.7
TAR636G1466 Trochodendron aralioides HOM05D004208 ORTHO05D005156 5.2e-156 555.1 507 60.7
Duzib138G0474 Durio zibethinus HOM05D004208 ORTHO05D005156 6.8e-156 554.7 507 61.9
Gohir.D08G208600 Gossypium hirsutum HOM05D004208 ORTHO05D005156 8.8e-156 554.3 507 61.9
Gorai.004G221000 Gossypium raimondii HOM05D004208 ORTHO05D005156 8.8e-156 554.3 507 61.9
Prupe.8G223600 Prunus persica HOM05D004208 ORTHO05D005156 1.5e-155 553.5 507 61.3
Duzib133G1203 Durio zibethinus HOM05D004208 ORTHO05D005156 7.5e-155 551.2 507 60.9
CANSAT01G2107 Cannabis sativa HOM05D004208 ORTHO05D005156 2.2e-154 549.7 513 61.0
Manes.12G032400 Manihot esculenta HOM05D004208 ORTHO05D005156 2.2e-154 549.7 507 61.3
Dinv22405 Davidia involucrata HOM05D004208 ORTHO05D005156 4.1e-153 545.4 510 59.8
COL.COLO4_05893 Corchorus olitorius HOM05D004208 ORTHO05D005156 3.5e-152 542.3 516 59.3
Haze_08822 Corylus avellana HOM05D004208 ORTHO05D005156 4.3e-150 535.4 492 60.0
GSVIVG01028335001 Vitis vinifera HOM05D004208 ORTHO05D005156 1.5e-147 526.9 507 60.4
Actinidia07297 Actinidia chinensis HOM05D004208 ORTHO05D005156 6.4e-146 521.5 510 58.6
CsaV3_5G028820 Cucumis sativus L. HOM05D004208 ORTHO05D005156 1.1e-145 520.8 508 57.1
Lj2A1151T32 Lonicera japonica HOM05D004208 ORTHO05D005156 1.1e-145 520.8 513 58.3
Actinidia25791 Actinidia chinensis HOM05D004208 ORTHO05D005156 2.4e-145 519.6 524 57.3
Hma1.2p1_0273F.1_g109690 Hydrangea macrophylla HOM05D004208 ORTHO05D005156 5.4e-145 518.5 507 58.4
Atru.chr5.1689 Acer truncatum HOM05D004208 ORTHO05D005156 7.0e-145 518.1 507 58.8
Manes.13G034400 Manihot esculenta HOM05D004208 ORTHO05D005156 2.0e-144 516.5 507 56.8
Sed0002598 Sechium edule HOM05D004208 ORTHO05D005156 1.5e-142 510.4 508 57.1
Sed0003224 Sechium edule HOM05D004208 ORTHO05D005156 5.6e-142 508.4 507 56.0
AUR62030125 Chenopodium quinoa HOM05D004208 ORTHO05D005156 2.8e-141 506.1 507 56.2
CSS0041954 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 4.7e-141 505.4 510 55.9
AUR62038602 Chenopodium quinoa HOM05D004208 ORTHO05D005156 1.2e-139 500.7 507 55.8
QL12p032241 Quercus lobata HOM05D004208 ORTHO05D005156 1.5e-139 500.4 498 56.6
CSS0038412 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 7.5e-139 498.0 510 55.1
FAN17G2653 Fragaria x ananassa HOM05D004208 ORTHO05D005156 7.5e-139 498.0 507 55.2
FAN20G2986 Fragaria x ananassa HOM05D004208 ORTHO05D005156 6.4e-138 495.0 499 56.1
FAN07G0785 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.1e-137 494.2 538 53.0
PSO339G3828 Papaver somniferum HOM05D004208 ORTHO05D005156 1.1e-137 494.2 509 55.4
FAN15G2877 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.4e-137 493.8 530 54.0
CDE03G0182 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 1.9e-137 493.4 506 54.3
Ah.03g147410 Amaranthus hybridus HOM05D004208 ORTHO05D005156 4.1e-137 492.3 509 55.6
Potri.005G224500 Populus trichocarpa HOM05D004208 ORTHO05D005156 9.2e-137 491.1 509 56.2
FvH4_4g12040 Fragaria vesca HOM05D004208 ORTHO05D005156 1.6e-136 490.3 507 54.4
FAN27G3501 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.6e-136 490.3 493 56.6
RcHm_v2.0_Chr6g0288111 Rosa chinensis HOM05D004208 ORTHO05D005156 2.0e-136 490.0 507 54.6
Sabra05G0173200 Salix brachista HOM05D004208 ORTHO05D005156 2.0e-136 490.0 524 55.0
Potri.002G038300 Populus trichocarpa HOM05D004208 ORTHO05D005156 7.8e-136 488.0 511 56.4
MD05G1197100 Malus domestica HOM05D004208 ORTHO05D005156 1.7e-135 486.9 515 55.7
Ah.02g120380 Amaranthus hybridus HOM05D004208 ORTHO05D005156 3.9e-135 485.7 506 54.7
TWI32G0756 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 8.6e-135 484.6 507 55.2
EL10Ac7g17258 Beta vulgaris HOM05D004208 ORTHO05D005156 1.5e-134 483.8 440 59.5
Aa31LG8G17460 Aethionema arabicum HOM05D004208 ORTHO05D005156 4.3e-134 482.3 507 51.9
FvH4_2g21470 Fragaria vesca HOM05D004208 ORTHO05D005156 5.6e-134 481.9 507 54.4
Ciclev10019992m.g Citrus clementina HOM05D004208 ORTHO05D005156 3.6e-133 479.2 507 56.4
Cc01_g18340 Coffea canephora HOM05D004208 ORTHO05D005156 4.7e-133 478.8 515 54.0
SalBow1G3185 Salvia bowleyana HOM05D004208 ORTHO05D005156 6.2e-133 478.4 448 58.3
Sopen01g041810 Solanum pennellii HOM05D004208 ORTHO05D005156 8.1e-133 478.0 518 54.2
Solyc01g098230.3 Solanum lycopersicum HOM05D004208 ORTHO05D005156 1.4e-132 477.2 518 54.1
Lsat_1_v5_gn_7_79121 Lactuca sativa HOM05D004208 ORTHO05D005156 1.8e-132 476.9 514 55.1
AT2G36070 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 6.8e-132 474.9 507 52.5
Migut.O00608 Erythranthe guttata HOM05D004208 ORTHO05D005156 6.8e-132 474.9 462 57.6
FAN24G2300 Fragaria x ananassa HOM05D004208 ORTHO05D005156 6.8e-132 474.9 485 55.9
CAN.G134.214 Capsicum annuum HOM05D004208 ORTHO05D005156 8.9e-132 474.6 510 53.7
Migut.N01348 Erythranthe guttata HOM05D004208 ORTHO05D005156 4.9e-130 468.8 462 57.1
MBI10_g22594_MAGBIO Magnolia biondii HOM05D004208 ORTHO05D005156 1.9e-129 466.8 427 59.3
Thhalv10001977m.g Eutrema salsugineum HOM05D004208 ORTHO05D005156 7.1e-129 464.9 507 51.3
Glyma.04G107400 Glycine max HOM05D004208 ORTHO05D005156 7.1e-129 464.9 506 53.4
Psat7g228960 Pisum sativum HOM05D004208 ORTHO05D005156 9.2e-129 464.5 506 54.0
Sabra02G0030700 Salix brachista HOM05D004208 ORTHO05D005156 9.2e-129 464.5 462 58.0
Peaxi162Scf00225g00519 Petunia axillaris HOM05D004208 ORTHO05D005156 1.6e-128 463.8 527 52.4
AL4G32160 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 4.6e-128 462.2 507 51.1
Actinidia09547 Actinidia chinensis HOM05D004208 ORTHO05D005156 3.0e-127 459.5 510 53.1
HanXRQChr16g0512021 Helianthus annuus HOM05D004208 ORTHO05D005156 3.0e-127 459.5 513 53.2
SGA_v2.0_scaffold32G13335 Striga asiatica HOM05D004208 ORTHO05D005156 3.3e-126 456.1 492 54.1
Phvul.005G002100 Phaseolus vulgaris HOM05D004208 ORTHO05D005156 7.3e-126 454.9 443 57.8
AL3G53520 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 9.5e-126 454.5 507 50.3
Cpa.g.sc81.94 Carica papaya HOM05D004208 ORTHO05D005156 3.6e-125 452.6 463 56.6
Nitab4.5_0000245g0150 Nicotiana tabacum HOM05D004208 ORTHO05D005156 8.1e-125 451.4 505 53.5
ATR0736G190 Amborella trichopoda HOM05D004208 ORTHO05D005156 5.2e-124 448.7 508 51.2
TAR362G0204 Trochodendron aralioides HOM05D004208 ORTHO05D005156 7.6e-123 444.9 464 55.8
Carub.0004s1781 Capsella rubella HOM05D004208 ORTHO05D005156 1.3e-122 444.1 507 49.5
MSTRG.16949 Avicennia marina HOM05D004208 ORTHO05D005156 6.4e-122 441.8 511 51.7
RcHm_v2.0_Chr4g0409381 Rosa chinensis HOM05D004208 ORTHO05D005156 8.4e-122 441.4 425 57.2
Ca_26001_v3 Cicer arietinum L. HOM05D004208 ORTHO05D005156 1.4e-121 440.7 513 50.9
Nn3g19657 Nelumbo nucifera HOM05D004208 ORTHO05D005156 1.9e-121 440.3 507 51.1
Medtr2g083690 Medicago truncatula HOM05D004208 ORTHO05D005156 9.2e-121 438.0 443 56.2
Rhsim01G0263600 Rhododendron simsii HOM05D004208 ORTHO05D005156 1.2e-120 437.6 510 51.6
MELO3C033986.2 Cucumis melo HOM05D004208 ORTHO05D005156 1.0e-119 434.5 589 45.3
Dinv34629 Davidia involucrata HOM05D004208 ORTHO05D005156 5.1e-119 432.2 444 57.9
SGA_v2.0_scaffold58G20323 Striga asiatica HOM05D004208 ORTHO05D005156 5.1e-119 432.2 405 58.8
THA.LOC104805532 Tarenaya hassleriana HOM05D004208 ORTHO05D005156 8.6e-119 431.4 508 50.0
arahy.Tifrunner.gnm1.ann1.W57KUE Arachis hypogaea HOM05D004208 ORTHO05D005156 1.2e-117 427.6 539 48.6
VMungo1080G0701 Vigna mungo HOM05D004208 ORTHO05D005156 1.6e-117 427.2 443 54.9
Aqoxy2G03649 Aquilegia oxysepala HOM05D004208 ORTHO05D005156 3.6e-117 426.0 501 50.3
Sp3g33730 Schrenkiella parvula HOM05D004208 ORTHO05D005156 4.7e-117 425.6 508 48.6
TWI34G1830 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 3.1e-116 422.9 507 50.1
Peaxi162Scf00225g00527 Petunia axillaris HOM05D004208 ORTHO05D005156 6.9e-116 421.8 435 55.6
Medtr4g075680 Medicago truncatula HOM05D004208 ORTHO05D005156 2.6e-115 419.9 496 50.4
FAN12G0345 Fragaria x ananassa HOM05D004208 ORTHO05D005156 3.8e-114 416.0 553 47.2
BcaB07g31584 Brassica carinata HOM05D004208 ORTHO05D005156 4.9e-114 415.6 503 48.7
FAN12G3775 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.1e-113 414.5 553 47.0
AT2G20510 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 1.9e-113 413.7 507 46.7
DCAR_005689 Daucus carota HOM05D004208 ORTHO05D005156 2.4e-113 413.3 531 48.2
Oeu062471.2 Olea europaea HOM05D004208 ORTHO05D005156 3.2e-113 412.9 564 46.5
BcaB03g16846 Brassica carinata HOM05D004208 ORTHO05D005156 1.0e-111 407.9 510 48.0
BraA09t36939Z Brassica rapa HOM05D004208 ORTHO05D005156 2.3e-111 406.8 512 47.5
Lalb_Chr15g0090311 Lupinus albus HOM05D004208 ORTHO05D005156 2.5e-110 403.3 514 48.8
A09p12940 Brassica napus HOM05D004208 ORTHO05D005156 3.6e-109 399.4 509 46.8
BraA07t27815Z Brassica rapa HOM05D004208 ORTHO05D005156 3.6e-109 399.4 509 47.3
C09p15320 Brassica napus HOM05D004208 ORTHO05D005156 6.2e-109 398.7 509 46.6
BolC9t54440H Brassica oleracea HOM05D004208 ORTHO05D005156 8.1e-109 398.3 509 47.2
A07p00220 Brassica napus HOM05D004208 ORTHO05D005156 2.4e-108 396.7 509 47.7
Nitab4.5_0001165g0160 Nicotiana tabacum HOM05D004208 ORTHO05D005156 9.0e-108 394.8 469 51.6
CARHR130310 Cardamine hirsuta HOM05D004208 ORTHO05D005156 2.0e-107 393.7 507 47.5
BcaC04g22784 Brassica carinata HOM05D004208 ORTHO05D005156 4.5e-107 392.5 509 46.2
TPR.G5025 Trifolium pratense HOM05D004208 ORTHO05D005156 3.8e-106 389.4 402 53.5
BcaB08g34912 Brassica carinata HOM05D004208 ORTHO05D005156 4.9e-106 389.0 508 47.0
Zm00001eb111900 Zea mays HOM05D004208 ORTHO05D005156 6.4e-106 388.7 472 47.7
HPP92_012187 Vanilla planifolia HOM05D004208 ORTHO05D005156 1.4e-105 387.5 448 49.3
BolC7t40497H Brassica oleracea HOM05D004208 ORTHO05D005156 2.1e-104 383.6 508 45.9
Oeu042777.2 Olea europaea HOM05D004208 ORTHO05D005156 3.5e-104 382.9 481 49.3
Carub.0003s3496 Capsella rubella HOM05D004208 ORTHO05D005156 6.0e-104 382.1 507 45.2
BcaC06g36740 Brassica carinata HOM05D004208 ORTHO05D005156 1.0e-103 381.3 508 45.7
arahy.Tifrunner.gnm1.ann1.M6MGA2 Arachis hypogaea HOM05D004208 ORTHO05D005156 8.7e-103 378.3 495 47.9
CDE04G1955 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 3.1e-100 369.8 387 52.2
ECA236G3853 Erigeron canadensis HOM05D004208 ORTHO05D000364 6.9e-100 368.6 468 48.3
CSS0015888 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 9.0e-100 368.2 463 49.2
C07p00510 Brassica napus HOM05D004208 ORTHO05D005156 4.2e-97 359.4 510 44.7
Os07g0409700 Oryza sativa ssp. japonica HOM05D004208 ORTHO05D005156 7.1e-97 358.6 463 47.3
Nitab4.5_0007798g0030 Nicotiana tabacum HOM05D004208 ORTHO05D005156 1.3e-95 354.4 423 52.5
Medtr4g029490 Medicago truncatula HOM05D004208 ORTHO05D005156 1.8e-92 344.0 443 48.5
Nitab4.5_0001526g0060 Nicotiana tabacum HOM05D004208 ORTHO05D005156 3.1e-92 343.2 437 49.7
Sc05g0000700 Simmondsia chinensis HOM05D004208 ORTHO05D005156 2.8e-85 320.1 366 51.4
BcaC07g41210 Brassica carinata HOM05D004208 ORTHO05D005156 1.9e-81 307.4 403 46.2
CBR_g30902 Chara braunii HOM05D004208 ORTHO05D005156 2.7e-80 303.5 451 41.2
Lj6g0013651 Lotus japonicus HOM05D004208 ORTHO05D005156 4.6e-80 302.8 506 40.5
Peaxi162Scf00118g00111 Petunia axillaris HOM05D004208 ORTHO05D005156 2.3e-79 300.4 395 48.1
Mapoly0070s0010 Marchantia polymorpha HOM05D004208 ORTHO05D005156 2.4e-76 290.4 372 43.8
SMO353G0191 Selaginella moellendorffii HOM05D004208 ORTHO05D005156 8.5e-74 282.0 447 41.6
SEGI_36648 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 2.7e-72 276.9 359 47.9
Oeu021968.1 Olea europaea HOM05D004208 ORTHO05D005156 6.1e-72 275.8 474 41.6
ClCG01G005870 Citrullus lanatus HOM05D004208 ORTHO05D005156 3.2e-65 253.4 216 60.2
PGSC0003DMG400022489 Solanum tuberosum HOM05D004208 ORTHO05D005156 4.2e-65 253.1 216 61.1
Pp3c4_19960 Physcomitrium patens HOM05D004208 ORTHO05D005156 1.2e-64 251.5 309 43.7
AagrBONN_evm.TU.Sc2ySwM_344.3623 Anthoceros agrestis HOM05D004208 ORTHO05D005156 3.0e-63 246.9 310 44.2
Pp3c12_7570 Physcomitrium patens HOM05D004208 ORTHO05D005156 9.7e-62 241.9 383 38.4
unitig_746.g26574 Utricularia gibba HOM05D004208 ORTHO05D005156 4.4e-54 216.5 222 50.5
Lalb_Chr06g0171061 Lupinus albus HOM05D004208 ORTHO05D005156 3.2e-49 200.3 180 58.9
HanXRQChr10g0294161 Helianthus annuus HOM05D004208 ORTHO05D005156 2.3e-47 194.1 239 51.9
Lalb_Chr06g0171071 Lupinus albus HOM05D004208 ORTHO05D005156 2.3e-47 194.1 272 47.4
SHI09778 Sapria himalayana HOM05D004208 ORTHO05D005156 5.5e-41 172.9 290 42.1
Actinidia37513 Actinidia chinensis HOM05D004208 ORTHO05D005156 4.7e-40 169.9 156 58.3
SEGI_05587 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 1.9e-33 147.9 90 71.1
MCO02G332 Micromonas commoda HOM05D004208 ORTHO05D005156 4.9e-29 133.3 247 32.8
Glyma.09G002800 Glycine max HOM05D004208 ORTHO05D005156 2.0e-27 127.9 76 76.3
CAN.G279.25 Capsicum annuum HOM05D004208 ORTHO05D005156 4.7e-24 116.7 229 40.2
SEGI_40921 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 6.2e-24 116.3 73 68.5
Cre16.g660800 Chlamydomonas reinhardtii HOM05D004208 ORTHO05D005156 8.0e-24 115.9 244 28.7
PRCOL_00004598 Prasinoderma coloniale HOM05D004208 ORTHO05D005156 9.8e-22 109.0 190 33.2
Rhsim01G0263500 Rhododendron simsii HOM05D004208 ORTHO05D005156 2.9e-21 107.5 140 50.7
RcHm_v2.0_Chr5g0013581 Rosa chinensis HOM05D004208 ORTHO05D005156 2.7e-19 100.9 59 74.6
Atru.chr3.4028 Acer truncatum HOM05D004208 ORTHO05D005156 2.3e-18 97.8 60 73.3
Aqoxy5G04369 Aquilegia oxysepala HOM05D004870 ORTHO05D006061 1.1e-15 89.0 135 44.4
QL04p049599 Quercus lobata HOM05D000196 ORTHO05D000279 6.0e-11 73.2 43 79.1
C01p23590 Brassica napus HOM05D026626 ORTHO05D027483 5.1e-10 70.1 88 43.2
BolC1t02302H Brassica oleracea HOM05D026626 ORTHO05D027483 8.6e-10 69.3 88 43.2
MD09G1008600 Malus domestica HOM05D004208 ORTHO05D005156 4.3e-09 67.0 55 58.2
CDE04G1040 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 2.1e-08 64.7 114 41.2
FvH4_4g16331 Fragaria vesca HOM05D004208 ORTHO05D197324 2.1e-08 64.7 75 50.7


User provided reference genes

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