Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B01457 Eucalyptus grandis HOM05D005855 ORTHO05D006406 0.0e+00 1181.0 677 100.0
PGR031G3878 Punica granatum HOM05D005855 ORTHO05D006406 5.4e-178 628.6 682 62.2
Potri.008G077800 Populus trichocarpa HOM05D005855 ORTHO05D006406 4.6e-177 625.5 683 63.3
QL01p051691 Quercus lobata HOM05D005855 ORTHO05D006406 8.1e-174 614.8 684 60.1
QL01p051722 Quercus lobata HOM05D005855 ORTHO05D006406 8.1e-174 614.8 684 60.1
Lj8C197T11 Lonicera japonica HOM05D005855 ORTHO05D006406 6.4e-171 605.1 680 62.1
TAR633G1091 Trochodendron aralioides HOM05D005855 ORTHO05D006406 3.2e-170 602.8 684 59.1
Manes.13G000700 Manihot esculenta HOM05D005855 ORTHO05D006406 5.4e-170 602.1 680 59.6
Sabra08G0057900 Salix brachista HOM05D005855 ORTHO05D006406 7.1e-170 601.7 686 62.1
Prupe.6G365000 Prunus persica HOM05D005855 ORTHO05D006406 2.1e-169 600.1 684 60.1
Dinv17130 Davidia involucrata HOM05D005855 ORTHO05D006406 2.5e-167 593.2 685 59.7
Sopen11g004450 Solanum pennellii HOM05D005855 ORTHO05D006406 2.5e-167 593.2 686 59.0
CsaV3_2G010280 Cucumis sativus L. HOM05D005855 ORTHO05D006406 3.7e-166 589.3 678 59.0
Actinidia19643 Actinidia chinensis HOM05D005855 ORTHO05D006406 1.4e-165 587.4 676 60.1
Rhsim04G0133000 Rhododendron simsii HOM05D005855 ORTHO05D006406 1.4e-165 587.4 685 58.5
MD12G1261700 Malus domestica HOM05D005855 ORTHO05D006406 1.8e-165 587.0 684 58.5
PGSC0003DMG400016248 Solanum tuberosum HOM05D005855 ORTHO05D006406 2.4e-165 586.6 684 58.9
Solyc11g008670.2 Solanum lycopersicum HOM05D005855 ORTHO05D006406 1.7e-163 580.5 683 58.1
MELO3C008612.2 Cucumis melo HOM05D005855 ORTHO05D006406 3.8e-163 579.3 681 58.3
Ca_08015_v3 Cicer arietinum L. HOM05D005855 ORTHO05D006406 5.5e-162 575.5 686 51.7
RcHm_v2.0_Chr3g0447421 Rosa chinensis HOM05D005855 ORTHO05D006406 1.6e-161 573.9 683 57.8
FAN14G2818 Fragaria x ananassa HOM05D005855 ORTHO05D006406 2.1e-161 573.5 683 58.6
Gohir.A13G090000 Gossypium hirsutum HOM05D005855 ORTHO05D006406 3.5e-161 572.8 677 56.7
FvH4_6g00081 Fragaria vesca HOM05D005855 ORTHO05D006406 6.0e-161 572.0 683 58.3
Gorai.002G148000 Gossypium raimondii HOM05D005855 ORTHO05D006406 6.0e-161 572.0 676 57.0
Peaxi162Scf00254g00712 Petunia axillaris HOM05D005855 ORTHO05D006406 1.0e-160 571.2 693 57.7
AUR62000270 Chenopodium quinoa HOM05D005855 ORTHO05D006406 1.3e-160 570.9 689 57.2
Haze_04608 Corylus avellana HOM05D005855 ORTHO05D006406 1.8e-160 570.5 750 52.1
Glyma.18G244800 Glycine max HOM05D005855 ORTHO05D006406 8.7e-160 568.2 679 51.7
Lj1g0024601 Lotus japonicus HOM05D005855 ORTHO05D006406 1.5e-159 567.4 681 51.4
FAN02G1917 Fragaria x ananassa HOM05D005855 ORTHO05D006406 1.9e-159 567.0 684 57.6
CiPaw.08G111900 Carya illinoinensis HOM05D005855 ORTHO05D006406 3.3e-159 566.2 681 55.5
vmacro08871 Vaccinium macrocarpon HOM05D005855 ORTHO05D006406 2.8e-158 563.1 705 52.6
Ciclev10000302m.g Citrus clementina HOM05D005855 ORTHO05D006406 3.7e-158 562.8 684 56.9
THA.LOC104805689 Tarenaya hassleriana HOM05D005855 ORTHO05D006406 6.9e-157 558.5 681 56.5
Glyma.09G248000 Glycine max HOM05D005855 ORTHO05D006406 9.0e-157 558.1 681 51.8
Gohir.A02G107108 Gossypium hirsutum HOM05D005855 ORTHO05D006406 1.5e-156 557.4 673 57.4
Atru.chr2.218 Acer truncatum HOM05D005855 ORTHO05D006406 4.5e-156 555.8 697 58.2
Phvul.008G051800 Phaseolus vulgaris HOM05D005855 ORTHO05D006406 4.5e-156 555.8 679 50.2
TAR362G1086 Trochodendron aralioides HOM05D005855 ORTHO05D006406 7.6e-156 555.1 683 56.4
Cc09_g04110 Coffea canephora HOM05D005855 ORTHO05D006406 4.9e-155 552.4 677 55.7
Lalb_Chr03g0038151 Lupinus albus HOM05D005855 ORTHO05D006406 4.9e-155 552.4 691 49.2
Hund21931 Selenicereus undatus HOM05D005855 ORTHO05D006406 8.4e-155 551.6 673 54.4
TPR.G31229 Trifolium pratense HOM05D005855 ORTHO05D006406 2.5e-154 550.1 706 51.4
Nitab4.5_0003928g0050 Nicotiana tabacum HOM05D005855 ORTHO05D006406 5.5e-154 548.9 716 54.7
CANSAT64G2413 Cannabis sativa HOM05D005855 ORTHO05D006406 2.1e-153 547.0 685 56.9
COL.COLO4_22931 Corchorus olitorius HOM05D005855 ORTHO05D006406 3.5e-153 546.2 656 57.8
Duzib177G0112 Durio zibethinus HOM05D005855 ORTHO05D006406 7.9e-153 545.0 671 58.3
CAN.G321.5 Capsicum annuum HOM05D005855 ORTHO05D006406 3.9e-152 542.7 681 56.8
THA.LOC104822010 Tarenaya hassleriana HOM05D005855 ORTHO05D006406 5.1e-152 542.3 685 49.1
FAN09G4305 Fragaria x ananassa HOM05D005855 ORTHO05D006406 1.9e-151 540.4 708 55.8
Nitab4.5_0001003g0160 Nicotiana tabacum HOM05D005855 ORTHO05D006406 2.5e-151 540.0 713 51.9
TWI18G0231 Tripterygium wilfordii HOM05D005855 ORTHO05D006406 2.5e-151 540.0 672 55.7
Sed0023015 Sechium edule HOM05D005855 ORTHO05D006406 2.8e-150 536.6 680 55.9
Thhalv10018127m.g Eutrema salsugineum HOM05D005855 ORTHO05D006406 6.3e-150 535.4 674 55.5
Potri.002G209795 Populus trichocarpa HOM05D005855 ORTHO05D006406 8.2e-150 535.0 640 59.8
MSTRG.8191 Avicennia marina HOM05D005855 ORTHO05D006406 3.1e-149 533.1 676 55.2
Sp5g20320 Schrenkiella parvula HOM05D005855 ORTHO05D006406 9.0e-149 531.6 676 55.5
Ah.04g159310 Amaranthus hybridus HOM05D005855 ORTHO05D006406 5.9e-148 528.9 677 54.4
ECA232G0592 Erigeron canadensis HOM05D005855 ORTHO05D006406 5.9e-148 528.9 687 52.8
Gohir.D13G093500 Gossypium hirsutum HOM05D005855 ORTHO05D006406 1.0e-147 528.1 679 55.4
MD00G1017400 Malus domestica HOM05D005855 ORTHO05D006406 3.8e-147 526.2 692 54.2
Gohir.D03G072500 Gossypium hirsutum HOM05D005855 ORTHO05D006406 5.0e-147 525.8 673 55.9
Gorai.003G087300 Gossypium raimondii HOM05D005855 ORTHO05D006406 5.0e-147 525.8 673 55.7
Aa31LG2G2480 Aethionema arabicum HOM05D005855 ORTHO05D006406 6.5e-147 525.4 674 51.9
Aqoxy2G04154 Aquilegia oxysepala HOM05D005855 ORTHO05D006406 8.5e-147 525.0 695 47.3
ClCG11G010010 Citrullus lanatus HOM05D005855 ORTHO05D006406 2.5e-146 523.5 682 55.4
arahy.Tifrunner.gnm1.ann1.VEFL47 Arachis hypogaea HOM05D005855 ORTHO05D006406 6.1e-145 518.8 686 52.9
VMungo1383G1707 Vigna mungo HOM05D005855 ORTHO05D006406 6.1e-145 518.8 678 49.3
DCAR_031596 Daucus carota HOM05D005855 ORTHO05D006406 7.9e-145 518.5 687 53.3
Sc16g0010640 Simmondsia chinensis HOM05D005855 ORTHO05D006406 3.3e-143 513.1 639 56.7
AUR62006618 Chenopodium quinoa HOM05D005855 ORTHO05D006406 7.4e-143 511.9 676 54.3
MBI07_g11487_MAGBIO Magnolia biondii HOM05D005855 ORTHO05D006406 1.3e-142 511.1 705 52.2
Medtr7g080500 Medicago truncatula HOM05D005855 ORTHO05D006406 3.7e-142 509.6 682 48.1
CARHR057120 Cardamine hirsuta HOM05D005855 ORTHO05D006406 2.4e-141 506.9 677 53.2
Thecc.05G112200 Theobroma cacao HOM05D005855 ORTHO05D006406 4.1e-141 506.1 641 56.3
EL10Ac4g10026 Beta vulgaris HOM05D005855 ORTHO05D006406 6.9e-141 505.4 680 54.0
Psat3g103080 Pisum sativum HOM05D005855 ORTHO05D006406 2.0e-140 503.8 714 48.0
SGA_v2.0_scaffold340G49313 Striga asiatica HOM05D005855 ORTHO05D006406 2.0e-140 503.8 687 53.6
Actinidia07922 Actinidia chinensis HOM05D005855 ORTHO05D006406 2.6e-140 503.4 679 51.3
Migut.F01842 Erythranthe guttata HOM05D005855 ORTHO05D006406 5.9e-140 502.3 682 52.1
QL01p051710 Quercus lobata HOM05D005855 ORTHO05D006406 1.3e-139 501.1 485 57.3
AT1G65470 Arabidopsis thaliana HOM05D005855 ORTHO05D006406 5.0e-139 499.2 683 54.9
AL2G22160 Arabidopsis lyrata HOM05D005855 ORTHO05D006406 6.1e-137 492.3 682 54.1
Lsat_1_v5_gn_0_14480 Lactuca sativa HOM05D005855 ORTHO05D006406 5.1e-136 489.2 688 52.9
Oeu034710.1 Olea europaea HOM05D005855 ORTHO05D006406 1.1e-135 488.0 684 53.1
Lalb_Chr21g0311491 Lupinus albus HOM05D005855 ORTHO05D006406 2.8e-134 483.4 667 47.7
SGA_v2.0_scaffold122G33208 Striga asiatica HOM05D005855 ORTHO05D006406 1.5e-132 477.6 679 51.1
HanXRQChr16g0511741 Helianthus annuus HOM05D005855 ORTHO05D006406 4.5e-132 476.1 689 51.7
TWI36G1346 Tripterygium wilfordii HOM05D000941 ORTHO05D006406 6.5e-131 472.2 670 52.1
Carub.0002s1120 Capsella rubella HOM05D005855 ORTHO05D006406 5.5e-130 469.2 693 51.4
PSO017G4019 Papaver somniferum HOM05D005855 ORTHO05D006406 2.9e-123 446.8 672 52.2
PSO573G0046 Papaver somniferum HOM05D005855 ORTHO05D006406 1.1e-122 444.9 673 51.3
A07p32840 Brassica napus HOM05D005855 ORTHO05D006406 1.2e-121 441.4 683 48.6
C06p39070 Brassica napus HOM05D005855 ORTHO05D006406 2.1e-121 440.7 683 48.5
BraA07t30911Z Brassica rapa HOM05D005855 ORTHO05D006406 4.7e-121 439.5 683 48.5
BolC6t38999H Brassica oleracea HOM05D005855 ORTHO05D006406 1.0e-120 438.3 683 48.5
unitig_749.g13497 Utricularia gibba HOM05D005855 ORTHO05D006406 3.7e-118 429.9 676 50.0
arahy.Tifrunner.gnm1.ann1.65FHJK Arachis hypogaea HOM05D005855 ORTHO05D006406 1.3e-115 421.4 475 54.1
Actinidia31264 Actinidia chinensis HOM05D005855 ORTHO05D006406 2.2e-110 404.1 681 43.8
Oeu001220.3 Olea europaea HOM05D005855 ORTHO05D006406 1.7e-107 394.4 612 51.6
Os01g0896300 Oryza sativa ssp. japonica HOM05D005855 ORTHO05D006406 1.5e-106 391.3 743 42.9
ATR0743G043 Amborella trichopoda HOM05D005855 ORTHO05D006406 3.1e-101 373.6 727 45.0
Zm00001eb365740 Zea mays HOM05D005855 ORTHO05D006406 3.3e-98 363.6 737 40.0
HPP92_024393 Vanilla planifolia HOM05D005855 ORTHO05D006406 2.0e-92 344.4 689 43.1
Zm00001eb144810 Zea mays HOM05D005855 ORTHO05D006406 2.7e-92 344.0 764 37.3
CDE04G3007 Ceratophyllum demersum HOM05D005855 ORTHO05D006406 8.3e-78 295.8 657 41.1
SEGI_12971 Sequoiadendron giganteum HOM05D005855 ORTHO05D006406 1.1e-77 295.4 749 35.2
Zm00001eb304780 Zea mays HOM05D005855 ORTHO05D006406 1.7e-75 288.1 695 37.1
arahy.Tifrunner.gnm1.ann1.8C47BX Arachis hypogaea HOM05D005855 ORTHO05D006406 4.4e-71 273.5 496 40.3
arahy.Tifrunner.gnm1.ann1.F2WWIZ Arachis hypogaea HOM05D005855 ORTHO05D006406 2.7e-68 264.2 496 39.7
CDE02G2532 Ceratophyllum demersum HOM05D005855 ORTHO05D006406 5.8e-63 246.5 466 45.9
Os07g0273301 Oryza sativa ssp. japonica HOM05D005855 ORTHO05D006406 5.8e-63 246.5 414 39.1
GSVIVG01007185001 Vitis vinifera HOM05D005855 ORTHO05D006406 1.2e-60 238.8 223 61.0
Cpa.g.sc88.1 Carica papaya HOM05D005855 ORTHO05D006406 4.9e-54 216.9 246 52.8
Dinv29076 Davidia involucrata HOM05D005855 ORTHO05D006406 3.4e-47 194.1 300 42.3
arahy.Tifrunner.gnm1.ann1.X0XBNQ Arachis hypogaea HOM05D005855 ORTHO05D006406 4.6e-44 183.7 199 56.8
Pp3c3_24970 Physcomitrium patens HOM05D005855 ORTHO05D006406 5.1e-43 180.3 371 37.2
Mapoly0189s0010 Marchantia polymorpha HOM05D005855 ORTHO05D006406 1.6e-36 158.7 610 35.7
AagrBONN_evm.TU.Sc2ySwM_344.4907 Anthoceros agrestis HOM05D005855 ORTHO05D006406 3.5e-36 157.5 688 27.5
SMO356G0323 Selaginella moellendorffii HOM05D005855 ORTHO05D006406 5.1e-35 153.7 440 32.3
Zm00001eb310680 Zea mays HOM05D000012 ORTHO05D006406 2.2e-25 121.7 143 49.0
CBR_g39948 Chara braunii HOM05D005855 ORTHO05D006406 1.3e-22 112.5 172 43.6
GSVIVG01007186001 Vitis vinifera HOM05D005855 ORTHO05D006406 3.0e-19 101.3 56 76.8
Zm00001eb381860 Zea mays HOM05D000012 ORTHO05D006406 2.0e-18 98.6 97 53.6
Cpa.g.c37190 Carica papaya HOM05D005855 ORTHO05D006406 1.4e-16 92.4 57 70.2
Nn8g40536 Nelumbo nucifera HOM05D005855 ORTHO05D006406 4.5e-15 87.4 82 54.9
VMungo1383G0582 Vigna mungo HOM05D005855 ORTHO05D000818 5.9e-15 87.0 121 39.7
Zm00001eb367440 Zea mays HOM05D005855 ORTHO05D006406 3.8e-14 84.3 106 50.0
Lju114A5T28 Lonicera japonica HOM05D005855 ORTHO05D006406 8.0e-12 76.6 139 41.0
RcHm_v2.0_Chr5g0011851 Rosa chinensis HOM05D005855 ORTHO05D006406 6.3e-09 67.0 47 68.1
Lju1609C0G6 Lonicera japonica HOM05D016202 ORTHO05D006406 7.0e-08 63.5 67 53.7
Lju1034A2T22 Lonicera japonica HOM05D016202 ORTHO05D006406 1.2e-07 62.8 69 50.7
Lj9A5T14 Lonicera japonica HOM05D016202 ORTHO05D006406 2.6e-07 61.6 80 46.2
Cre12.g550152 Chlamydomonas reinhardtii HOM05D005855 ORTHO05D006406 8.5e-06 56.6 158 32.3


User provided reference genes

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