Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B01312 Eucalyptus grandis HOM05D004153 ORTHO05D004678 2.9e-88 328.6 167 100.0
Ciclev10007035m.g Citrus clementina HOM05D004153 ORTHO05D004678 3.4e-49 198.7 158 56.3
Lj3P816T18 Lonicera japonica HOM05D004153 ORTHO05D004678 2.9e-48 195.7 150 60.7
CANSAT78G0904 Cannabis sativa HOM05D004153 ORTHO05D004678 5.5e-47 191.4 163 54.0
Lj3P819T20 Lonicera japonica HOM05D004153 ORTHO05D004678 1.0e-45 187.2 135 63.0
PGR031G1230 Punica granatum HOM05D004153 ORTHO05D004678 1.3e-45 186.8 156 58.3
Atru.chr4.2837 Acer truncatum HOM05D004153 ORTHO05D004678 5.1e-45 184.9 161 54.0
Lj6g0000547 Lotus japonicus HOM05D004153 ORTHO05D004678 2.8e-43 179.1 164 52.4
TWI53G1241 Tripterygium wilfordii HOM05D004153 ORTHO05D004678 3.7e-43 178.7 162 53.1
Duzib052G0234 Durio zibethinus HOM05D004153 ORTHO05D004678 6.3e-43 177.9 162 52.5
Thecc.04G284700 Theobroma cacao HOM05D004153 ORTHO05D004678 1.1e-42 177.2 161 52.8
EL10Ac3g06596 Beta vulgaris HOM05D004153 ORTHO05D004678 1.4e-42 176.8 165 51.5
Haze_01203 Corylus avellana HOM05D004153 ORTHO05D004678 3.4e-41 172.2 161 52.2
RcHm_v2.0_Chr4g0422241 Rosa chinensis HOM05D004153 ORTHO05D004678 4.5e-41 171.8 164 48.8
COL.COLO4_23373 Corchorus olitorius HOM05D004153 ORTHO05D004678 5.9e-41 171.4 158 50.6
TPR.G13834 Trifolium pratense HOM05D004153 ORTHO05D004678 5.9e-41 171.4 162 50.6
Glyma.15G147800 Glycine max HOM05D004153 ORTHO05D004678 7.6e-41 171.0 163 48.5
Phvul.009G248000 Phaseolus vulgaris HOM05D004153 ORTHO05D004678 7.6e-41 171.0 162 49.4
Duzib138G0244 Durio zibethinus HOM05D004153 ORTHO05D004678 1.3e-40 170.2 159 51.6
Glyma.09G044900 Glycine max HOM05D004153 ORTHO05D004678 2.9e-40 169.1 163 49.1
Sed0018454 Sechium edule HOM05D004153 ORTHO05D004678 1.1e-39 167.2 161 50.3
Gohir.D12G011200 Gossypium hirsutum HOM05D004153 ORTHO05D004678 4.2e-39 165.2 158 50.6
Gorai.008G011200 Gossypium raimondii HOM05D004153 ORTHO05D004678 4.2e-39 165.2 158 50.6
Lalb_Chr18g0051691 Lupinus albus HOM05D004153 ORTHO05D004678 4.2e-39 165.2 160 48.1
Atru.chr5.1180 Acer truncatum HOM05D004153 ORTHO05D004678 3.6e-38 162.2 158 49.4
TWI73G1192 Tripterygium wilfordii HOM05D004153 ORTHO05D004678 4.6e-38 161.8 158 50.0
Potri.010G025200 Populus trichocarpa HOM05D004153 ORTHO05D004678 1.4e-37 160.2 155 49.7
TWI23G0022 Tripterygium wilfordii HOM05D004153 ORTHO05D004678 1.8e-37 159.8 163 48.5
Psat1g153880 Pisum sativum HOM05D004153 ORTHO05D004678 3.0e-37 159.1 164 46.3
TAR365G1014 Trochodendron aralioides HOM05D004153 ORTHO05D004678 3.0e-37 159.1 135 53.3
VMungo1309G0390 Vigna mungo HOM05D004153 ORTHO05D004678 3.9e-37 158.7 162 45.1
MELO3C006663.2 Cucumis melo HOM05D004153 ORTHO05D004678 6.7e-37 157.9 159 47.8
Gohir.A12G010800 Gossypium hirsutum HOM05D004153 ORTHO05D004678 1.9e-36 156.4 158 49.4
Manes.04G056100 Manihot esculenta HOM05D004153 ORTHO05D004678 1.9e-36 156.4 160 45.0
Medtr2g436790 Medicago truncatula HOM05D004153 ORTHO05D004678 1.9e-36 156.4 164 45.7
CsaV3_3G014620 Cucumis sativus L. HOM05D004153 ORTHO05D004678 4.3e-36 155.2 158 48.1
Manes.05G063900 Manihot esculenta HOM05D004153 ORTHO05D004678 4.3e-36 155.2 162 45.7
Manes.03G195100 Manihot esculenta HOM05D004153 ORTHO05D004678 5.7e-36 154.8 141 52.5
Aqoxy2G02983 Aquilegia oxysepala HOM05D004153 ORTHO05D004678 9.7e-36 154.1 165 43.6
FAN07G0961 Fragaria x ananassa HOM05D004153 ORTHO05D004678 1.3e-35 153.7 157 47.8
Gohir.D10G170400 Gossypium hirsutum HOM05D004153 ORTHO05D004678 2.2e-35 152.9 163 45.4
Potri.002G206100 Populus trichocarpa HOM05D004153 ORTHO05D004678 2.8e-35 152.5 163 45.4
Gohir.A10G164100 Gossypium hirsutum HOM05D004153 ORTHO05D004678 3.7e-35 152.1 163 45.4
QL12p027168 Quercus lobata HOM05D004153 ORTHO05D004678 4.8e-35 151.8 162 48.8
Gorai.011G190200 Gossypium raimondii HOM05D004153 ORTHO05D004678 8.2e-35 151.0 163 44.8
Peaxi162Scf00067g00254 Petunia axillaris HOM05D004153 ORTHO05D004678 1.4e-34 150.2 161 45.3
Potri.014G131400 Populus trichocarpa HOM05D004153 ORTHO05D004678 3.1e-34 149.1 164 43.9
Sabra02G0153200 Salix brachista HOM05D004153 ORTHO05D004678 5.3e-34 148.3 163 44.2
Lj1C0T8 Lonicera japonica HOM05D004153 ORTHO05D004678 9.1e-34 147.5 159 47.2
Nitab4.5_0000619g0070 Nicotiana tabacum HOM05D004153 ORTHO05D004678 9.1e-34 147.5 160 43.8
Nitab4.5_0003901g0020 Nicotiana tabacum HOM05D004153 ORTHO05D004678 9.1e-34 147.5 160 43.8
Prupe.1G136800 Prunus persica HOM05D004153 ORTHO05D004678 9.1e-34 147.5 142 47.2
CAN.G339.31 Capsicum annuum HOM05D004153 ORTHO05D004678 2.6e-33 146.0 154 45.5
FAN15G0276 Fragaria x ananassa HOM05D004153 ORTHO05D004678 3.4e-33 145.6 158 46.8
Thecc.01G297300 Theobroma cacao HOM05D004153 ORTHO05D004678 3.4e-33 145.6 158 45.6
Nn4g25841 Nelumbo nucifera HOM05D004153 ORTHO05D004678 4.5e-33 145.2 166 43.4
PSO017G2667 Papaver somniferum HOM05D004153 ORTHO05D004678 4.5e-33 145.2 151 45.7
Prupe.8G258500 Prunus persica HOM05D004153 ORTHO05D004678 5.9e-33 144.8 163 43.6
Sc13g0003480 Simmondsia chinensis HOM05D004153 ORTHO05D004678 5.9e-33 144.8 151 47.7
PSO675G8366 Papaver somniferum HOM05D004153 ORTHO05D004678 7.7e-33 144.4 151 45.0
Cc01_g20660 Coffea canephora HOM05D004153 ORTHO05D004678 1.0e-32 144.1 165 41.8
Migut.D00197 Erythranthe guttata HOM05D004153 ORTHO05D004678 1.0e-32 144.1 161 44.1
Lsat_1_v5_gn_5_190540 Lactuca sativa HOM05D004153 ORTHO05D004678 6.5e-32 141.4 162 40.7
Solyc09g074910.1 Solanum lycopersicum HOM05D004153 ORTHO05D004678 6.5e-32 141.4 163 42.9
Hma1.2p1_0209F.1_g088580 Hydrangea macrophylla HOM05D004153 ORTHO05D004678 1.1e-31 140.6 150 45.3
Rhsim04G0221600 Rhododendron simsii HOM05D004153 ORTHO05D004678 1.1e-31 140.6 152 46.7
FAN15G2246 Fragaria x ananassa HOM05D000802 ORTHO05D001074 1.4e-31 140.2 158 44.9
PGSC0003DMG400035200 Solanum tuberosum HOM05D004153 ORTHO05D004678 1.4e-31 140.2 148 45.3
Oeu030970.1 Olea europaea HOM05D004153 ORTHO05D004678 1.9e-31 139.8 163 42.9
RcHm_v2.0_Chr6g0293581 Rosa chinensis HOM05D004153 ORTHO05D004678 1.9e-31 139.8 159 44.0
Sopen09g029730 Solanum pennellii HOM05D004153 ORTHO05D004678 1.9e-31 139.8 163 42.3
MD03G1285300 Malus domestica HOM05D004153 ORTHO05D004678 2.5e-31 139.4 163 40.5
FvH4_2g25400 Fragaria vesca HOM05D004153 ORTHO05D004678 4.2e-31 138.7 158 44.3
FAN24G2766 Fragaria x ananassa HOM05D004153 ORTHO05D004678 4.2e-31 138.7 158 44.3
FAN27G1399 Fragaria x ananassa HOM05D004153 ORTHO05D004678 5.5e-31 138.3 153 45.8
THA.LOC104802169 Tarenaya hassleriana HOM05D004153 ORTHO05D004678 5.5e-31 138.3 153 43.1
DCAR_002817 Daucus carota HOM05D004153 ORTHO05D004678 1.2e-30 137.1 154 43.5
Haze_04898 Corylus avellana HOM05D004153 ORTHO05D004678 1.6e-30 136.7 150 46.0
EL10Ac6g15659 Beta vulgaris HOM05D004153 ORTHO05D004678 2.7e-30 136.0 166 39.2
Sed0010104 Sechium edule HOM05D004153 ORTHO05D004678 3.6e-30 135.6 160 43.8
CANSAT01G1893 Cannabis sativa HOM05D004153 ORTHO05D004678 1.4e-29 133.7 158 40.5
SalBow3G0249 Salvia bowleyana HOM05D004153 ORTHO05D004678 2.3e-29 132.9 152 42.1
Ciclev10022120m.g Citrus clementina HOM05D004153 ORTHO05D004678 3.0e-29 132.5 160 42.5
Phvul.001G205900 Phaseolus vulgaris HOM05D004153 ORTHO05D004678 3.0e-29 132.5 160 42.5
FAN20G2301 Fragaria x ananassa HOM05D004153 ORTHO05D004678 5.1e-29 131.7 158 43.7
HanXRQChr10g0284631 Helianthus annuus HOM05D004153 ORTHO05D004678 5.1e-29 131.7 154 37.7
Ca_01937_v3 Cicer arietinum L. HOM05D000639 ORTHO05D004019 8.8e-29 131.0 132 50.0
Nn5g27910 Nelumbo nucifera HOM05D004153 ORTHO05D004678 8.8e-29 131.0 158 40.5
Sabra10G0013900 Salix brachista HOM05D004153 ORTHO05D004678 1.5e-28 130.2 127 53.5
Carub.0004s3048 Capsella rubella HOM05D004153 ORTHO05D004678 2.0e-28 129.8 166 40.4
Lj1g0005892 Lotus japonicus HOM05D004153 ORTHO05D004678 3.3e-28 129.0 158 39.2
Cpa.g.sc9.210 Carica papaya HOM05D004153 ORTHO05D004678 4.4e-28 128.6 158 40.5
Ah.08g213200 Amaranthus hybridus HOM05D004153 ORTHO05D004678 7.4e-28 127.9 164 37.8
AT2G47770 Arabidopsis thaliana HOM05D004153 ORTHO05D004678 7.4e-28 127.9 166 39.2
CiPaw.07G106600 Carya illinoinensis HOM05D004153 ORTHO05D004678 1.3e-27 127.1 161 40.4
PGR119G1654 Punica granatum HOM05D004153 ORTHO05D004678 1.3e-27 127.1 158 43.7
PGR119G2063 Punica granatum HOM05D004153 ORTHO05D004678 1.3e-27 127.1 158 43.7
AL4G47340 Arabidopsis lyrata HOM05D004153 ORTHO05D004678 2.2e-27 126.3 166 38.0
Cfa005949 Carpinus fangiana HOM05D004153 ORTHO05D004678 2.8e-27 125.9 124 46.8
SGA_v2.0_scaffold2G01404 Striga asiatica HOM05D004153 ORTHO05D004678 2.8e-27 125.9 165 35.8
unitig_0.g1178 Utricularia gibba HOM05D004153 ORTHO05D004678 2.8e-27 125.9 151 39.1
HanXRQChr01g0001291 Helianthus annuus HOM05D004153 ORTHO05D004678 1.4e-26 123.6 140 42.1
CARHR143140 Cardamine hirsuta HOM05D004153 ORTHO05D004678 1.8e-26 123.2 166 39.2
CSS0027100 Camellia sinensis var. sinensis HOM05D004153 ORTHO05D004678 3.1e-26 122.5 155 36.1
Glyma.03G213300 Glycine max HOM05D004153 ORTHO05D004678 4.1e-26 122.1 162 38.9
Lsat_1_v5_gn_9_1141 Lactuca sativa HOM05D004153 ORTHO05D004678 6.9e-26 121.3 165 33.3
Lalb_Chr15g0078571 Lupinus albus HOM05D004153 ORTHO05D004678 1.2e-25 120.6 164 38.4
MBI18_g21824_MAGBIO Magnolia biondii HOM05D004153 ORTHO05D004678 1.2e-25 120.6 163 41.1
VMungo1383G3271 Vigna mungo HOM05D004153 ORTHO05D004678 1.2e-25 120.6 160 38.8
AUR62033157 Chenopodium quinoa HOM05D004153 ORTHO05D004678 1.5e-25 120.2 163 36.2
AUR62033169 Chenopodium quinoa HOM05D004153 ORTHO05D004678 1.5e-25 120.2 163 36.2
Psat3g022920 Pisum sativum HOM05D004153 ORTHO05D004678 1.5e-25 120.2 165 38.8
Aa31LG1G29110 Aethionema arabicum HOM05D004153 ORTHO05D004678 2.0e-25 119.8 167 38.9
Thhalv10001647m.g Eutrema salsugineum HOM05D004153 ORTHO05D004678 4.5e-25 118.6 167 38.9
arahy.Tifrunner.gnm1.ann1.3INE6D Arachis hypogaea HOM05D004153 ORTHO05D004678 1.0e-24 117.5 148 41.2
BraA04t18942Z Brassica rapa HOM05D004153 ORTHO05D004678 2.9e-24 115.9 166 35.5
Sp4g29700 Schrenkiella parvula HOM05D004153 ORTHO05D004678 2.9e-24 115.9 167 38.9
ClCG09G006030 Citrullus lanatus HOM05D004153 ORTHO05D004678 3.8e-24 115.5 162 40.1
Lalb_Chr18g0047121 Lupinus albus HOM05D004153 ORTHO05D004678 1.9e-23 113.2 171 36.8
A04p35060 Brassica napus HOM05D004153 ORTHO05D004678 2.5e-23 112.8 167 36.5
AUR62008617 Chenopodium quinoa HOM05D004153 ORTHO05D004678 4.2e-23 112.1 163 34.4
Sed0026977 Sechium edule HOM05D004153 ORTHO05D004678 4.2e-23 112.1 153 39.9
ATR0796G004 Amborella trichopoda HOM05D004153 ORTHO05D004678 9.4e-23 110.9 164 35.4
BcaC02g06991 Brassica carinata HOM05D004153 ORTHO05D004678 1.2e-22 110.5 166 36.7
C04p72970 Brassica napus HOM05D004153 ORTHO05D004678 1.2e-22 110.5 166 36.7
BolC4t28778H Brassica oleracea HOM05D004153 ORTHO05D004678 1.2e-22 110.5 166 36.7
MD11G1304700 Malus domestica HOM05D004153 ORTHO05D004678 2.1e-22 109.8 99 48.5
Medtr7g108650 Medicago truncatula HOM05D004153 ORTHO05D004678 2.1e-22 109.8 165 36.4
HPP92_016940 Vanilla planifolia HOM05D004153 ORTHO05D004678 3.6e-22 109.0 157 37.6
BcaB06g29494 Brassica carinata HOM05D004153 ORTHO05D004678 2.3e-21 106.3 167 35.9
BcaB06g29497 Brassica carinata HOM05D004153 ORTHO05D004678 2.3e-21 106.3 167 35.9
BcaC02g12543 Brassica carinata HOM05D004153 ORTHO05D004678 2.0e-20 103.2 166 36.1
C04p00110 Brassica napus HOM05D004153 ORTHO05D004678 2.0e-20 103.2 166 34.9
BcaB06g29496 Brassica carinata HOM05D004153 ORTHO05D004678 4.4e-20 102.1 154 37.7
BolC4t21658H Brassica oleracea HOM05D004153 ORTHO05D004678 4.4e-20 102.1 166 34.9
Rhsim01G0283900 Rhododendron simsii HOM05D004153 ORTHO05D004678 2.4e-18 96.3 165 32.1
CsaV3_7G029110 Cucumis sativus L. HOM05D004153 ORTHO05D004678 5.3e-18 95.1 115 43.5
MELO3C016017.2 Cucumis melo HOM05D004153 ORTHO05D004678 2.0e-17 93.2 161 34.8
Actinidia24837 Actinidia chinensis HOM05D004153 ORTHO05D004678 2.6e-17 92.8 113 37.2
BraA05t19015Z Brassica rapa HOM05D004153 ORTHO05D004678 4.5e-17 92.0 167 32.3
A05p00190 Brassica napus HOM05D004153 ORTHO05D004678 1.3e-16 90.5 167 32.3
CBR_g30074 Chara braunii HOM05D004153 ORTHO05D004678 2.3e-13 79.7 144 28.5
SMO115G0169 Selaginella moellendorffii HOM05D004153 ORTHO05D004678 1.5e-12 77.0 133 36.1
Lj1C32T8 Lonicera japonica HOM05D004153 ORTHO05D004678 2.6e-12 76.3 163 30.7
Zm00001eb354150 Zea mays HOM05D004153 ORTHO05D004678 5.7e-12 75.1 107 40.2
Os05g0151200 Oryza sativa ssp. japonica HOM05D004153 ORTHO05D004678 2.2e-11 73.2 106 36.8
AagrBONN_evm.TU.Sc2ySwM_362.296 Anthoceros agrestis HOM05D004153 ORTHO05D004678 2.8e-11 72.8 155 34.8
CDE02G0764 Ceratophyllum demersum HOM05D004153 ORTHO05D004678 6.3e-11 71.6 129 33.3
BcaB02g08747 Brassica carinata HOM05D004153 ORTHO05D004678 8.2e-11 71.2 166 29.5
Mapoly0050s0023 Marchantia polymorpha HOM05D004153 ORTHO05D004678 7.0e-10 68.2 123 39.0
Pp3c26_2060 Physcomitrium patens HOM05D004153 ORTHO05D004678 9.1e-10 67.8 114 31.6
SEGI_18828 Sequoiadendron giganteum HOM05D004153 ORTHO05D004678 3.5e-09 65.9 156 27.6
Pp3c4_22190 Physcomitrium patens HOM05D004153 ORTHO05D004678 5.9e-09 65.1 114 31.6
Dinv19716 Davidia involucrata HOM05D004153 ORTHO05D004678 1.0e-08 64.3 163 31.9
Pp3c24_14170 Physcomitrium patens HOM05D004153 ORTHO05D004678 1.0e-08 64.3 154 34.4
ECA248G0131 Erigeron canadensis HOM05D004153 ORTHO05D004678 8.5e-08 61.2 77 37.7
Actinidia21057 Actinidia chinensis HOM05D004153 ORTHO05D004678 1.1e-07 60.8 96 36.5
Pp3c10_6760 Physcomitrium patens HOM05D004153 ORTHO05D004678 2.5e-07 59.7 163 26.4
Mapoly0003s0268 Marchantia polymorpha HOM05D004153 ORTHO05D004678 2.1e-06 56.6 114 28.1
Pp3c2_17540 Physcomitrium patens HOM05D004153 ORTHO05D004678 4.7e-06 55.5 161 26.7
SMO144G0096 Selaginella moellendorffii HOM05D004153 ORTHO05D004678 6.1e-06 55.1 121 27.3


User provided reference genes

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