Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B01277 Eucalyptus grandis HOM05D005803 ORTHO05D008090 1.0e-307 1059.3 562 100.0
PGR031G1735 Punica granatum HOM05D005803 ORTHO05D008090 1.6e-260 902.5 562 81.5
Thecc.04G279700 Theobroma cacao HOM05D005803 ORTHO05D008090 1.1e-256 889.8 562 80.6
Gorai.011G187600 Gossypium raimondii HOM05D005803 ORTHO05D008090 2.0e-255 885.6 562 82.4
Ciclev10004654m.g Citrus clementina HOM05D005803 ORTHO05D008090 3.9e-254 881.3 562 79.4
GSVIVG01017783001 Vitis vinifera HOM05D005803 ORTHO05D008090 5.0e-254 880.9 562 79.4
Gohir.A10G161600 Gossypium hirsutum HOM05D005803 ORTHO05D008090 2.5e-253 878.6 542 82.3
Manes.15G015300 Manihot esculenta HOM05D005803 ORTHO05D008090 4.3e-253 877.9 562 80.8
CSS0017376 Camellia sinensis var. sinensis HOM05D005803 ORTHO05D008090 1.5e-250 869.4 562 79.2
CSS0035312 Camellia sinensis var. sinensis HOM05D005803 ORTHO05D008090 1.5e-250 869.4 562 79.2
Sopen01g029400 Solanum pennellii HOM05D005803 ORTHO05D008090 7.5e-250 867.1 562 77.9
Cfa015360 Carpinus fangiana HOM05D005803 ORTHO05D008090 6.4e-249 864.0 562 78.1
Hma1.2p1_0698F.1_g205430 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 6.4e-249 864.0 562 79.2
TWI09G0274 Tripterygium wilfordii HOM05D005803 ORTHO05D008090 1.1e-248 863.2 563 78.7
CAN.G223.20 Capsicum annuum HOM05D005803 ORTHO05D008090 4.1e-248 861.3 562 79.7
Duzib151G0664 Durio zibethinus HOM05D005803 ORTHO05D008090 2.1e-247 859.0 562 81.3
QL06p007721 Quercus lobata HOM05D005803 ORTHO05D008090 2.1e-247 859.0 561 78.3
Sabra08G0155700 Salix brachista HOM05D005803 ORTHO05D008090 1.7e-246 855.9 562 77.2
CsaV3_6G017350 Cucumis sativus L. HOM05D005803 ORTHO05D008090 5.1e-246 854.4 562 77.8
Potri.008G215100 Populus trichocarpa HOM05D005803 ORTHO05D008090 6.6e-246 854.0 562 77.4
Gohir.D10G168100 Gossypium hirsutum HOM05D005803 ORTHO05D008090 6.2e-244 847.4 562 80.1
Prupe.1G140200 Prunus persica HOM05D005803 ORTHO05D008090 6.2e-244 847.4 562 77.9
Dinv44408 Davidia involucrata HOM05D005803 ORTHO05D008090 8.1e-244 847.0 562 78.5
Haze_01246 Corylus avellana HOM05D005803 ORTHO05D008090 1.1e-243 846.7 601 72.7
Peaxi162Scf00386g00615 Petunia axillaris HOM05D005803 ORTHO05D008090 3.1e-243 845.1 562 76.7
Sc19g0005000 Simmondsia chinensis HOM05D005803 ORTHO05D008090 4.0e-243 844.7 562 77.2
Psat1g187960 Pisum sativum HOM05D005803 ORTHO05D008090 8.9e-243 843.6 562 78.1
Potri.010G022100 Populus trichocarpa HOM05D005803 ORTHO05D008090 8.9e-243 843.6 562 76.9
Glyma.15G096000 Glycine max HOM05D005803 ORTHO05D008090 2.6e-242 842.0 562 79.0
Sed0014775 Sechium edule HOM05D005803 ORTHO05D008090 3.4e-242 841.6 562 78.5
Glyma.13G216500 Glycine max HOM05D005803 ORTHO05D008090 1.7e-241 839.3 562 78.6
VMungo0540G0998 Vigna mungo HOM05D005803 ORTHO05D008090 4.9e-241 837.8 562 78.5
RcHm_v2.0_Chr4g0421441 Rosa chinensis HOM05D005803 ORTHO05D008090 6.4e-241 837.4 562 76.3
FAN07G1352 Fragaria x ananassa HOM05D005803 ORTHO05D008090 1.1e-240 836.6 565 78.2
Actinidia40241 Actinidia chinensis HOM05D005803 ORTHO05D008090 2.4e-240 835.5 558 77.8
FAN12G0977 Fragaria x ananassa HOM05D005803 ORTHO05D008090 2.7e-239 832.0 557 78.3
Lj6g0003207 Lotus japonicus HOM05D005803 ORTHO05D008090 7.8e-239 830.5 562 75.6
Nn3g21354 Nelumbo nucifera HOM05D005803 ORTHO05D008090 1.0e-238 830.1 562 75.1
Phvul.006G162900 Phaseolus vulgaris HOM05D005803 ORTHO05D008090 5.1e-238 827.8 562 76.5
FAN12G3070 Fragaria x ananassa HOM05D005803 ORTHO05D008090 1.9e-237 825.9 560 77.9
TAR365G0996 Trochodendron aralioides HOM05D005803 ORTHO05D008090 3.3e-237 825.1 542 77.5
MD16G1173300 Malus domestica HOM05D005803 ORTHO05D008090 2.1e-236 822.4 563 75.0
Lalb_Chr18g0055621 Lupinus albus HOM05D005803 ORTHO05D008090 4.7e-236 821.2 562 74.9
Ca_00559_v3 Cicer arietinum L. HOM05D005803 ORTHO05D008090 1.4e-235 819.7 562 76.5
Lsat_1_v5_gn_5_69681 Lactuca sativa HOM05D005803 ORTHO05D008090 3.1e-235 818.5 562 76.5
ClCG06G005310 Citrullus lanatus HOM05D005803 ORTHO05D008090 4.0e-235 818.1 627 69.2
MD13G1171800 Malus domestica HOM05D005803 ORTHO05D008090 4.0e-235 818.1 563 75.0
DCAR_027096 Daucus carota HOM05D005803 ORTHO05D008090 6.8e-235 817.4 576 75.3
CiPaw.01G151500 Carya illinoinensis HOM05D005803 ORTHO05D008090 7.6e-234 813.9 562 74.2
Atru.chr4.2785 Acer truncatum HOM05D005803 ORTHO05D008090 1.3e-233 813.1 515 79.8
FAN22G2255 Fragaria x ananassa HOM05D005803 ORTHO05D008090 7.8e-231 803.9 542 78.4
EL10Ac3g06553 Beta vulgaris HOM05D005803 ORTHO05D008090 2.3e-230 802.4 562 73.7
MSTRG.3937 Avicennia marina HOM05D005803 ORTHO05D008090 5.1e-230 801.2 545 74.3
Migut.G00189 Erythranthe guttata HOM05D005803 ORTHO05D008090 2.5e-229 798.9 545 73.9
Rhsim04G0218200 Rhododendron simsii HOM05D005803 ORTHO05D008090 4.3e-229 798.1 613 69.8
Cpa.g.sc1214.2 Carica papaya HOM05D005803 ORTHO05D008090 9.6e-229 797.0 562 74.4
CANSAT78G2259 Cannabis sativa HOM05D005803 ORTHO05D008090 1.3e-228 796.6 562 73.5
HanXRQChr13g0410111 Helianthus annuus HOM05D005803 ORTHO05D008090 1.8e-227 792.7 562 74.2
arahy.Tifrunner.gnm1.ann1.7QB25Q Arachis hypogaea HOM05D005803 ORTHO05D008090 2.4e-227 792.3 562 73.1
arahy.Tifrunner.gnm1.ann1.FSUI8I Arachis hypogaea HOM05D005803 ORTHO05D008090 2.4e-227 792.3 562 73.1
FvH4_4g17530 Fragaria vesca HOM05D005803 ORTHO05D008090 9.0e-227 790.4 513 77.8
Cc03_g02160 Coffea canephora HOM05D005803 ORTHO05D008090 2.0e-226 789.3 560 72.5
Aqoxy5G00678 Aquilegia oxysepala HOM05D005803 ORTHO05D008090 8.4e-225 783.9 542 73.2
THA.LOC104820247 Tarenaya hassleriana HOM05D005803 ORTHO05D008090 3.2e-224 781.9 562 71.9
Nitab4.5_0000644g0090 Nicotiana tabacum HOM05D005803 ORTHO05D008090 1.3e-220 770.0 576 71.5
Ah.13g074480 Amaranthus hybridus HOM05D005803 ORTHO05D008090 1.8e-219 766.1 555 71.5
Lj6C671G13 Lonicera japonica HOM05D005803 ORTHO05D008090 4.5e-218 761.5 515 75.5
PSO832G0201 Papaver somniferum HOM05D005803 ORTHO05D008090 2.9e-217 758.8 562 70.5
Sp4g21440 Schrenkiella parvula HOM05D005803 ORTHO05D008090 2.9e-217 758.8 562 71.7
Carub.0004s2114 Capsella rubella HOM05D005803 ORTHO05D008090 1.1e-216 756.9 562 71.9
Medtr2g019850 Medicago truncatula HOM05D005803 ORTHO05D008090 3.2e-216 755.4 562 72.1
MELO3C021349.2 Cucumis melo HOM05D005803 ORTHO05D008090 4.2e-216 755.0 642 64.3
BcaB02g09144 Brassica carinata HOM05D005803 ORTHO05D008090 5.4e-216 754.6 562 71.2
AT2G39090 Arabidopsis thaliana HOM05D005803 ORTHO05D008090 2.1e-215 752.7 562 71.4
A05p07190 Brassica napus HOM05D005803 ORTHO05D008090 1.0e-214 750.4 563 71.0
BraA05t19684Z Brassica rapa HOM05D005803 ORTHO05D008090 1.0e-214 750.4 563 71.0
PSO210G1989 Papaver somniferum HOM05D005803 ORTHO05D008090 1.8e-214 749.6 562 69.8
COL.COLO4_13910 Corchorus olitorius HOM05D005803 ORTHO05D008090 5.1e-214 748.0 513 75.0
CARHR133850 Cardamine hirsuta HOM05D005803 ORTHO05D008090 1.1e-213 746.9 562 69.9
HPP92_015179 Vanilla planifolia HOM05D005803 ORTHO05D008090 9.6e-213 743.8 562 68.5
BcaC02g12039 Brassica carinata HOM05D005803 ORTHO05D008090 8.1e-212 740.7 562 70.3
MBI19_g01944_MAGBIO Magnolia biondii HOM05D005803 ORTHO05D008090 3.1e-211 738.8 533 72.2
ATR0706G085 Amborella trichopoda HOM05D005803 ORTHO05D008090 1.5e-210 736.5 563 66.4
C04p08600 Brassica napus HOM05D005803 ORTHO05D008090 2.0e-210 736.1 563 70.2
BolC4t22455H Brassica oleracea HOM05D005803 ORTHO05D008090 2.0e-210 736.1 562 70.1
Thhalv10017916m.g Eutrema salsugineum HOM05D005803 ORTHO05D008090 1.9e-208 729.6 533 71.3
AL4G36390 Arabidopsis lyrata HOM05D005803 ORTHO05D008090 5.5e-208 728.0 562 70.1
Aa31LG5G20510 Aethionema arabicum HOM05D005803 ORTHO05D008090 2.3e-206 722.6 577 66.6
vmacro22476 Vaccinium macrocarpon HOM05D005803 ORTHO05D008090 3.1e-195 685.6 595 63.0
SGA_v2.0_scaffold57G20231 Striga asiatica HOM05D005803 ORTHO05D008090 1.1e-187 660.6 403 80.1
unitig_26.g9058 Utricularia gibba HOM05D005803 ORTHO05D008090 4.4e-181 638.6 432 71.5
Hma1.2p1_0698F.1_g205440 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 6.1e-175 618.2 393 79.6
Os05g0149900 Oryza sativa ssp. japonica HOM05D005803 ORTHO05D008090 7.0e-171 604.7 434 71.0
Mapoly0073s0077 Marchantia polymorpha HOM05D005803 ORTHO05D008090 1.5e-168 597.0 563 56.8
AUR62042651 Chenopodium quinoa HOM05D005803 ORTHO05D008090 1.5e-165 587.0 555 59.3
Pp3c23_6980 Physcomitrium patens HOM05D005803 ORTHO05D008090 2.0e-165 586.6 563 56.3
SMO119G0467 Selaginella moellendorffii HOM05D005803 ORTHO05D008090 2.1e-159 566.6 569 54.8
AagrBONN_evm.TU.Sc2ySwM_228.1968 Anthoceros agrestis HOM05D005803 ORTHO05D008090 2.9e-153 546.2 563 53.1
CBR_g37168 Chara braunii HOM05D005803 ORTHO05D000048 2.8e-151 539.7 551 51.7
AUR62043505 Chenopodium quinoa HOM05D005803 ORTHO05D008090 2.5e-144 516.5 382 70.2
Nitab4.5_0000829g0230 Nicotiana tabacum HOM05D005803 ORTHO05D008090 2.3e-142 510.0 339 77.6
BcaNung07183 Brassica carinata HOM05D005803 ORTHO05D008090 2.5e-136 490.0 523 56.0
TPR.G1478 Trifolium pratense HOM05D005803 ORTHO05D008090 8.1e-135 485.0 306 84.3
CDE06G0920 Ceratophyllum demersum HOM05D005803 ORTHO05D008090 5.2e-126 455.7 329 69.6
Zm00001eb418180 Zea mays HOM05D005803 ORTHO05D008090 3.9e-121 439.5 356 61.5
ECA240G2219 Erigeron canadensis HOM05D005803 ORTHO05D008090 1.9e-120 437.2 341 65.7
TPR.G35525 Trifolium pratense HOM05D005803 ORTHO05D008090 9.3e-99 365.2 261 70.1
MCO16G459 Micromonas commoda HOM05D005803 ORTHO05D008090 7.2e-83 312.4 539 37.8
Solyc01g067490.4 Solanum lycopersicum HOM05D005803 ORTHO05D008090 5.9e-77 292.7 198 75.3
Oeu029260.1 Olea europaea HOM05D005803 ORTHO05D008090 5.3e-70 269.6 208 69.7
ECA240G4135 Erigeron canadensis HOM05D005803 ORTHO05D008090 4.4e-64 250.0 200 69.5
Oeu032270.1 Olea europaea HOM05D005803 ORTHO05D008090 1.3e-60 238.4 144 77.1
SEGI_31260 Sequoiadendron giganteum HOM05D005803 ORTHO05D008090 2.6e-56 224.2 174 61.5
Hma1.2p1_2251F.1_g318140 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 2.2e-52 211.1 130 79.2
TPR.G29244 Trifolium pratense HOM05D005803 ORTHO05D008090 2.7e-45 187.6 162 64.2
BcaC07g41552 Brassica carinata HOM05D000238 ORTHO05D020090 7.5e-32 142.9 180 47.8
BcaC09g48072 Brassica carinata HOM05D005803 ORTHO05D020090 2.4e-30 137.9 178 46.6
C06p17250 Brassica napus HOM05D005803 ORTHO05D020090 2.4e-30 137.9 157 52.2
BolC6t36924H Brassica oleracea HOM05D005803 ORTHO05D020090 2.4e-30 137.9 157 52.2
TPR.G29241 Trifolium pratense HOM05D005803 ORTHO05D008090 3.5e-29 134.0 90 66.7
Hma1.2p1_0055F.1_g031500 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 3.3e-27 127.5 90 67.8
AL92U10050 Arabidopsis lyrata HOM05D005803 ORTHO05D008090 8.0e-26 122.9 131 55.7
C04p44010 Brassica napus HOM05D005803 ORTHO05D020090 8.0e-26 122.9 173 44.5
SEGI_25333 Sequoiadendron giganteum HOM05D005803 ORTHO05D020090 4.9e-23 113.6 77 67.5
Hma1.2p1_2251F.1_g318130 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 3.2e-22 110.9 130 53.1
BcaC08g44302 Brassica carinata HOM05D005803 ORTHO05D020090 5.0e-20 103.6 58 84.5
SEGI_29512 Sequoiadendron giganteum HOM05D005803 ORTHO05D008090 1.4e-17 95.5 81 61.7
Atru.chr4.2782 Acer truncatum HOM05D005803 ORTHO05D008090 4.4e-16 90.5 87 59.8
Hma1.2p1_1012F.1_g247600 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 2.1e-13 81.6 90 51.1
MCO11G723 Micromonas commoda HOM05D004454 ORTHO05D005462 2.8e-10 71.2 161 27.3
CBR_g45228 Chara braunii HOM05D004454 ORTHO05D005462 4.9e-07 60.5 140 27.1
Lsat_1_v5_gn_5_17960 Lactuca sativa HOM05D004454 ORTHO05D005462 7.1e-06 56.6 169 23.1
MD15G1194500 Malus domestica HOM05D003301 ORTHO05D003665 9.2e-06 56.2 155 26.5


User provided reference genes

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