Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B01266 Eucalyptus grandis HOM05D003864 ORTHO05D004658 1.0e-199 699.9 356 100.0
Potri.008G204700 Populus trichocarpa HOM05D003864 ORTHO05D004658 2.1e-141 506.1 290 81.7
Cfa015492 Carpinus fangiana HOM05D003864 ORTHO05D004658 1.3e-138 496.9 317 76.3
ClCG06G005360 Citrullus lanatus HOM05D003864 ORTHO05D004658 1.3e-138 496.9 329 73.6
PGR031G0559 Punica granatum HOM05D003864 ORTHO05D004658 3.8e-138 495.4 324 75.6
Manes.03G191300 Manihot esculenta HOM05D003864 ORTHO05D004658 8.4e-138 494.2 289 80.6
Duzib151G0071 Durio zibethinus HOM05D003864 ORTHO05D004658 1.4e-137 493.4 301 78.1
CiPaw.02G086600 Carya illinoinensis HOM05D003864 ORTHO05D004658 3.2e-137 492.3 289 81.7
Ciclev10005325m.g Citrus clementina HOM05D003864 ORTHO05D004658 3.2e-137 492.3 298 78.2
Haze_01063 Corylus avellana HOM05D003864 ORTHO05D004658 5.4e-137 491.5 303 78.2
TAR633G1069 Trochodendron aralioides HOM05D003864 ORTHO05D004658 2.7e-136 489.2 287 80.1
Sed0008062 Sechium edule HOM05D003864 ORTHO05D004658 6.0e-136 488.0 286 80.8
MELO3C021355.2 Cucumis melo HOM05D003864 ORTHO05D004658 1.0e-135 487.3 296 77.4
Nn4g25986 Nelumbo nucifera HOM05D003864 ORTHO05D004658 1.3e-135 486.9 302 76.8
Sabra08G0157300 Salix brachista HOM05D003864 ORTHO05D004658 2.3e-135 486.1 301 76.7
Thecc.04G277700 Theobroma cacao HOM05D003864 ORTHO05D004658 3.0e-135 485.7 320 73.4
Manes.15G016900 Manihot esculenta HOM05D003864 ORTHO05D004658 6.7e-135 484.6 340 72.1
Actinidia23428 Actinidia chinensis HOM05D003864 ORTHO05D004658 1.9e-134 483.0 291 79.0
Gohir.D10G166700 Gossypium hirsutum HOM05D003864 ORTHO05D004658 2.5e-134 482.6 295 77.6
Gorai.011G185900 Gossypium raimondii HOM05D003864 ORTHO05D004658 3.3e-134 482.3 295 77.6
Prupe.1G142000 Prunus persica HOM05D003864 ORTHO05D004658 4.3e-134 481.9 279 81.4
TWI53G1008 Tripterygium wilfordii HOM05D003864 ORTHO05D004658 7.4e-134 481.1 332 71.1
CiPaw.01G152900 Carya illinoinensis HOM05D003864 ORTHO05D004658 9.6e-134 480.7 277 81.2
Gohir.A10G101440 Gossypium hirsutum HOM05D003864 ORTHO05D004658 1.3e-133 480.3 274 81.0
TWI53G0015 Tripterygium wilfordii HOM05D003864 ORTHO05D004658 1.6e-133 479.9 332 71.1
CsaV3_6G017400 Cucumis sativus L. HOM05D003864 ORTHO05D004658 2.1e-133 479.6 328 70.4
GSVIVG01017804001 Vitis vinifera HOM05D003864 ORTHO05D004658 3.7e-133 478.8 299 77.6
Nn3g21324 Nelumbo nucifera HOM05D003864 ORTHO05D004658 8.1e-133 477.6 349 68.2
Sed0015457 Sechium edule HOM05D003864 ORTHO05D004658 1.1e-132 477.2 285 79.6
Solyc01g067630.3 Solanum lycopersicum HOM05D003864 ORTHO05D004658 1.1e-132 477.2 291 77.0
Cc03_g02350 Coffea canephora HOM05D003864 ORTHO05D004658 6.9e-132 474.6 301 75.7
Atru.chr4.2755 Acer truncatum HOM05D003864 ORTHO05D004658 9.0e-132 474.2 295 76.3
Aqoxy2G03115 Aquilegia oxysepala HOM05D003864 ORTHO05D004658 1.2e-131 473.8 281 78.3
PGSC0003DMG400030786 Solanum tuberosum HOM05D003864 ORTHO05D004658 1.5e-131 473.4 291 76.6
TAR362G0395 Trochodendron aralioides HOM05D003864 ORTHO05D004658 1.5e-131 473.4 322 71.7
MSTRG.10054 Avicennia marina HOM05D003864 ORTHO05D004658 1.4e-129 466.8 286 75.9
FvH4_4g17200 Fragaria vesca HOM05D003864 ORTHO05D004658 1.4e-129 466.8 272 80.1
Nitab4.5_0004537g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 7.1e-129 464.5 345 67.8
vmacro08202 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 7.1e-129 464.5 290 77.6
Nitab4.5_0000784g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 2.1e-128 463.0 285 76.5
PSO210G7573 Papaver somniferum HOM05D003864 ORTHO05D004658 3.5e-128 462.2 284 75.4
Lj6A670T81 Lonicera japonica HOM05D003864 ORTHO05D004658 1.0e-127 460.7 302 75.2
Peaxi162Scf00033g01410 Petunia axillaris HOM05D003864 ORTHO05D004658 3.9e-127 458.8 343 67.1
PSO170G3769 Papaver somniferum HOM05D003864 ORTHO05D004658 8.7e-127 457.6 284 74.6
THA.LOC104821766 Tarenaya hassleriana HOM05D003864 ORTHO05D004658 1.9e-126 456.4 295 73.2
Nitab4.5_0001054g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 9.6e-126 454.1 360 64.2
arahy.Tifrunner.gnm1.ann1.CLS5KG Arachis hypogaea HOM05D003864 ORTHO05D004658 1.3e-125 453.8 276 76.1
LjContig00389g0005087 Lotus japonicus HOM05D003864 ORTHO05D004658 1.3e-125 453.8 326 68.7
Oeu044793.1 Olea europaea HOM05D003864 ORTHO05D004658 6.2e-125 451.4 272 77.2
Nitab4.5_0001459g0140 Nicotiana tabacum HOM05D003864 ORTHO05D004658 1.1e-124 450.7 353 64.9
THA.LOC104820237 Tarenaya hassleriana HOM05D003864 ORTHO05D004658 1.4e-124 450.3 335 66.9
AL4G36380 Arabidopsis lyrata HOM05D003864 ORTHO05D004658 2.6e-123 446.0 288 73.3
PGR004G1016 Punica granatum HOM05D003864 ORTHO05D004658 3.4e-123 445.7 340 64.4
RcHm_v2.0_Chr4g0421021 Rosa chinensis HOM05D003864 ORTHO05D004658 2.2e-122 443.0 339 66.7
CAN.G256.9 Capsicum annuum HOM05D003864 ORTHO05D004658 2.9e-122 442.6 300 72.0
CDE01G0506 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 5.0e-122 441.8 287 71.4
Glyma.15G097900 Glycine max HOM05D003864 ORTHO05D004658 1.9e-121 439.9 273 75.5
TPR.G1486 Trifolium pratense HOM05D003864 ORTHO05D004658 3.5e-120 435.6 307 67.8
ECA240G1720 Erigeron canadensis HOM05D003864 ORTHO05D004658 4.6e-120 435.3 291 70.8
C03p25940 Brassica napus HOM05D003864 ORTHO05D004658 6.1e-120 434.9 295 69.8
AT2G39080 Arabidopsis thaliana HOM05D003864 ORTHO05D004658 3.0e-119 432.6 300 69.7
Lj4g0016445 Lotus japonicus HOM05D003864 ORTHO05D004658 3.0e-119 432.6 303 67.7
Phvul.006G161500 Phaseolus vulgaris HOM05D003864 ORTHO05D004658 3.0e-119 432.6 262 75.2
Glyma.05G133900 Glycine max HOM05D003864 ORTHO05D004658 3.9e-119 432.2 272 73.9
Lalb_Chr20g0118111 Lupinus albus HOM05D003864 ORTHO05D004658 3.9e-119 432.2 319 66.8
Ca_00573_v3 Cicer arietinum L. HOM05D003864 ORTHO05D004658 8.7e-119 431.0 262 74.4
Lsat_1_v5_gn_5_56881 Lactuca sativa HOM05D003864 ORTHO05D004658 8.7e-119 431.0 266 76.3
Cpa.g.sc1008.4 Carica papaya HOM05D003864 ORTHO05D004658 1.1e-118 430.6 295 71.2
Dinv38324 Davidia involucrata HOM05D003864 ORTHO05D004658 1.1e-118 430.6 300 72.0
MD13G1173800 Malus domestica HOM05D003864 ORTHO05D004658 1.1e-118 430.6 290 72.1
DCAR_027110 Daucus carota HOM05D003864 ORTHO05D004658 4.3e-118 428.7 285 73.0
Migut.G00209 Erythranthe guttata HOM05D003864 ORTHO05D004658 4.3e-118 428.7 281 71.9
Sp4g21430 Schrenkiella parvula HOM05D003864 ORTHO05D004658 4.3e-118 428.7 290 70.0
BraA05t19685Z Brassica rapa HOM05D003864 ORTHO05D004658 5.7e-118 428.3 339 63.1
DCAR_002443 Daucus carota HOM05D003864 ORTHO05D004658 5.7e-118 428.3 300 70.0
Sc19g0004950 Simmondsia chinensis HOM05D003864 ORTHO05D004658 5.7e-118 428.3 311 66.2
A03p21870 Brassica napus HOM05D003864 ORTHO05D004658 9.7e-118 427.6 297 69.4
Glyma.08G088600 Glycine max HOM05D003864 ORTHO05D004658 9.7e-118 427.6 290 69.7
arahy.Tifrunner.gnm1.ann1.ZU35GG Arachis hypogaea HOM05D003864 ORTHO05D004658 2.8e-117 426.0 288 70.8
Phvul.002G188400 Phaseolus vulgaris HOM05D003864 ORTHO05D004658 2.8e-117 426.0 305 65.9
Carub.0004s2113 Capsella rubella HOM05D003864 ORTHO05D004658 4.8e-117 425.2 302 67.2
Glyma.13G215300 Glycine max HOM05D003864 ORTHO05D004658 4.8e-117 425.2 292 69.5
BraA03t11423Z Brassica rapa HOM05D003864 ORTHO05D004658 2.4e-116 422.9 298 69.1
Thhalv10016876m.g Eutrema salsugineum HOM05D003864 ORTHO05D004658 4.1e-116 422.2 345 61.7
Os01g0367100 Oryza sativa ssp. japonica HOM05D003864 ORTHO05D004658 4.1e-116 422.2 282 70.2
Ca_18234_v3 Cicer arietinum L. HOM05D003864 ORTHO05D004658 5.3e-116 421.8 260 73.1
TPR.G23836 Trifolium pratense HOM05D003864 ORTHO05D004658 4.5e-115 418.7 312 64.7
Zm00001eb131760 Zea mays HOM05D003864 ORTHO05D004658 4.5e-115 418.7 308 65.6
EL10Ac6g14524 Beta vulgaris HOM05D003864 ORTHO05D004658 1.3e-114 417.2 274 70.4
Ah.12g064180 Amaranthus hybridus HOM05D003864 ORTHO05D004658 2.2e-114 416.4 269 71.0
COL.COLO4_13927 Corchorus olitorius HOM05D003864 ORTHO05D004658 6.5e-114 414.8 291 70.1
Medtr2g020190 Medicago truncatula HOM05D003864 ORTHO05D004658 1.1e-113 414.1 271 71.6
Lalb_Chr07g0188241 Lupinus albus HOM05D003864 ORTHO05D004658 2.5e-113 412.9 297 65.3
BcaB01g03648 Brassica carinata HOM05D003864 ORTHO05D004658 2.1e-112 409.8 348 60.3
Lalb_Chr18g0055711 Lupinus albus HOM05D003864 ORTHO05D004658 6.1e-112 408.3 307 67.1
Hund20596 Selenicereus undatus HOM05D003864 ORTHO05D004658 6.1e-112 408.3 334 62.0
A05p07200 Brassica napus HOM05D003864 ORTHO05D004658 2.3e-111 406.4 339 61.1
BcaB02g09145 Brassica carinata HOM05D003864 ORTHO05D004658 3.0e-111 406.0 284 69.4
Zm00001eb341670 Zea mays HOM05D003864 ORTHO05D004658 8.8e-111 404.4 298 64.1
Medtr4g094742 Medicago truncatula HOM05D003864 ORTHO05D004658 1.5e-110 403.7 269 69.1
Hma1.2p1_0150F.1_g066600 Hydrangea macrophylla HOM05D003864 ORTHO05D004658 2.0e-110 403.3 232 81.0
Rhsim02G0013600 Rhododendron simsii HOM05D003864 ORTHO05D004658 3.3e-110 402.5 340 62.4
BcaC02g12038 Brassica carinata HOM05D003864 ORTHO05D004658 2.2e-109 399.8 294 66.3
BolC4t22455H Brassica oleracea HOM05D005803 ORTHO05D008090 3.7e-109 399.1 294 66.3
Peaxi162Scf00386g00316 Petunia axillaris HOM05D003864 ORTHO05D004658 1.1e-108 397.5 338 63.6
MD16G1174800 Malus domestica HOM05D003864 ORTHO05D004658 1.4e-108 397.1 360 58.9
Rhsim04G0216400 Rhododendron simsii HOM05D003864 ORTHO05D004658 6.5e-106 388.3 325 63.1
C04p08610 Brassica napus HOM05D003864 ORTHO05D004658 4.2e-105 385.6 299 64.2
Actinidia00050 Actinidia chinensis HOM05D003864 ORTHO05D004658 7.2e-105 384.8 299 64.9
CDE05G0625 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 2.7e-104 382.9 309 60.5
vmacro15256 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 2.3e-103 379.8 396 54.3
vmacro22597 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 2.3e-103 379.8 337 59.1
Psat1g187240 Pisum sativum HOM05D003864 ORTHO05D004658 1.1e-102 377.5 267 67.8
HPP92_017180 Vanilla planifolia HOM05D003864 ORTHO05D004658 1.4e-100 370.5 342 57.0
SGA_v2.0_scaffold57G20242 Striga asiatica HOM05D003864 ORTHO05D004658 1.0e-98 364.4 291 63.6
VMungo0540G0878 Vigna mungo HOM05D006883 ORTHO05D008624 7.2e-97 358.2 231 72.7
ATR0706G015 Amborella trichopoda HOM05D003864 ORTHO05D004658 4.0e-95 352.4 290 61.0
Pp3c12_8620 Physcomitrium patens HOM05D003864 ORTHO05D004658 2.0e-91 340.1 258 59.7
Pp3c13_19760 Physcomitrium patens HOM05D003864 ORTHO05D004658 7.7e-91 338.2 273 54.9
MBI19_g44903_MAGBIO Magnolia biondii HOM05D003864 ORTHO05D004658 1.3e-90 337.4 252 65.1
VMungo0251G3051 Vigna mungo HOM05D003864 ORTHO05D004658 1.5e-89 334.0 272 59.6
Mapoly0090s0075 Marchantia polymorpha HOM05D003864 ORTHO05D004658 7.2e-89 331.6 340 53.8
SGA_v2.0_scaffold89G27550 Striga asiatica HOM05D003864 ORTHO05D004658 9.4e-89 331.3 290 57.9
Aa31LG5G20520 Aethionema arabicum HOM05D003864 ORTHO05D004658 1.5e-86 323.9 305 53.4
FAN07G1078 Fragaria x ananassa HOM05D003864 ORTHO05D004658 4.4e-86 322.4 272 59.9
FAN17G0790 Fragaria x ananassa HOM05D003864 ORTHO05D004658 2.2e-85 320.1 272 59.6
AagrBONN_evm.TU.Sc2ySwM_344.1910 Anthoceros agrestis HOM05D003864 ORTHO05D004658 2.8e-85 319.7 278 54.3
CARHR133840 Cardamine hirsuta HOM05D003864 ORTHO05D004658 2.7e-83 313.2 187 77.5
FAN22G0711 Fragaria x ananassa HOM05D003864 ORTHO05D004658 2.2e-82 310.1 281 56.9
arahy.Tifrunner.gnm1.ann1.858I9V Arachis hypogaea HOM05D003864 ORTHO05D004658 5.0e-82 308.9 323 51.1
arahy.Tifrunner.gnm1.ann1.WPBE4U Arachis hypogaea HOM05D003864 ORTHO05D004658 2.5e-81 306.6 323 50.8
Os01g0367400 Oryza sativa ssp. japonica HOM05D003864 ORTHO05D004658 1.4e-79 300.8 300 52.0
Sc25g0004750 Simmondsia chinensis HOM05D003864 ORTHO05D004658 1.4e-79 300.8 242 62.4
MBI19_g26585_MAGBIO Magnolia biondii HOM05D003864 ORTHO05D004658 9.8e-78 294.7 338 49.1
SMO356G0587 Selaginella moellendorffii HOM05D003864 ORTHO05D004658 8.3e-77 291.6 267 54.3
QL06p007391 Quercus lobata HOM05D003864 ORTHO05D004658 1.0e-74 284.6 197 72.1
AUR62007746 Chenopodium quinoa HOM05D003864 ORTHO05D004658 5.0e-74 282.3 264 53.4
Dinv44425 Davidia involucrata HOM05D003864 ORTHO05D004658 7.3e-73 278.5 174 75.9
CBR_g37156 Chara braunii HOM05D003864 ORTHO05D004658 2.3e-71 273.5 301 46.2
Sopen01g029580 Solanum pennellii HOM05D003864 ORTHO05D004658 1.5e-70 270.8 174 74.1
AUR62002937 Chenopodium quinoa HOM05D003864 ORTHO05D004658 2.0e-70 270.4 338 44.7
PGSC0003DMG400010656 Solanum tuberosum HOM05D003864 ORTHO05D004658 3.4e-70 269.6 174 73.6
SalBow2G1899 Salvia bowleyana HOM05D003864 ORTHO05D004658 1.4e-68 264.2 174 71.8
Solyc06g054530.3 Solanum lycopersicum HOM05D003864 ORTHO05D004658 4.6e-67 259.2 174 71.3
Sopen06g019600 Solanum pennellii HOM05D003864 ORTHO05D004658 5.9e-67 258.8 181 69.1
FAN12G3853 Fragaria x ananassa HOM05D003864 ORTHO05D004658 7.8e-67 258.5 247 55.1
CSS0001944 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 5.6e-65 252.3 187 67.4
CSS0038005 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 7.3e-65 251.9 187 66.8
C04p08680 Brassica napus HOM05D003864 ORTHO05D004658 1.4e-63 247.7 176 68.2
BolC3t14979H Brassica oleracea HOM05D003864 ORTHO05D004658 4.0e-63 246.1 178 66.9
Psat7g088240 Pisum sativum HOM05D003864 ORTHO05D004658 2.2e-61 240.4 148 73.6
unitig_748.g8369 Utricularia gibba HOM05D000472 ORTHO05D000344 8.3e-61 238.4 178 65.7
SHI00297 Sapria himalayana HOM05D003864 ORTHO05D004658 3.2e-60 236.5 501 32.3
MCO15G076 Micromonas commoda HOM05D003864 ORTHO05D004658 1.1e-52 211.5 235 43.8
Cre13.g608000 Chlamydomonas reinhardtii HOM05D003864 ORTHO05D004658 4.1e-52 209.5 291 38.8
BcaC02g12030 Brassica carinata HOM05D003864 ORTHO05D004658 8.1e-48 195.3 124 71.0
unitig_748.g8370 Utricularia gibba HOM05D003864 ORTHO05D004658 3.1e-47 193.4 113 72.6
PRCOL_00006073 Prasinoderma coloniale HOM05D003864 ORTHO05D004658 8.9e-47 191.8 344 34.3
HanXRQChr13g0411231 Helianthus annuus HOM05D003864 ORTHO05D004658 1.2e-46 191.4 130 68.5
BolC4t22460H Brassica oleracea HOM05D003864 ORTHO05D004658 5.8e-46 189.1 136 66.9
CDE12G0314 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 3.2e-44 183.3 106 78.3
CDE12G0924 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 6.0e-43 179.1 117 68.4
HanXRQChr13g0411221 Helianthus annuus HOM05D003864 ORTHO05D004658 1.3e-42 177.9 111 73.9
MSTRG.21813 Avicennia marina HOM05D003864 ORTHO05D004658 6.8e-39 165.6 104 73.1
SEGI_14152 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 8.4e-37 158.7 129 58.1
CSS0011053 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 2.4e-36 157.1 97 74.2
CSS0003637 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 7.1e-36 155.6 96 74.0
RcHm_v2.0_Chr4g0421071 Rosa chinensis HOM05D003864 ORTHO05D004658 7.1e-36 155.6 138 58.7
QL06p007393 Quercus lobata HOM05D003864 ORTHO05D004658 4.6e-35 152.9 86 79.1
CSS0041699 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 1.7e-34 151.0 186 47.8
SEGI_31487 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 1.1e-28 131.7 90 65.6
BcaNung07183 Brassica carinata HOM05D005803 ORTHO05D008090 8.7e-26 122.1 111 58.6
Actinidia25721 Actinidia chinensis HOM05D003864 ORTHO05D004658 4.9e-21 106.3 60 75.0
SEGI_13555 Sequoiadendron giganteum HOM05D003864 ORTHO05D004658 4.6e-19 99.8 72 59.7
RcHm_v2.0_Chr4g0421081 Rosa chinensis HOM05D003864 ORTHO05D004658 5.1e-18 96.3 56 78.6
CSS0015623 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 2.8e-16 90.5 51 78.4
Zm00001eb400060 Zea mays HOM05D003864 ORTHO05D004658 7.6e-14 82.4 51 78.4
Dinv02075 Davidia involucrata HOM05D003864 ORTHO05D035062 1.8e-10 71.2 45 71.1
Dinv08007 Davidia involucrata HOM05D003864 ORTHO05D035062 1.1e-09 68.6 43 72.1
Medtr8g027510 Medicago truncatula HOM05D003864 ORTHO05D004658 3.1e-07 60.5 37 78.4


User provided reference genes

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