Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B01248 Eucalyptus grandis HOM05D004069 ORTHO05D004699 1.6e-58 229.2 110 100.0
Eucgr.B01240 Eucalyptus grandis HOM05D004069 ORTHO05D004699 7.7e-58 226.9 110 99.1
Cfa015517 Carpinus fangiana HOM05D004069 ORTHO05D004699 2.3e-49 198.7 105 87.6
Cpa.g.sc16.88 Carica papaya HOM05D004069 ORTHO05D004699 2.9e-49 198.4 105 86.7
Manes.03G189600 Manihot esculenta HOM05D004069 ORTHO05D004699 2.5e-48 195.3 105 84.8
Manes.15G019000 Manihot esculenta HOM05D004069 ORTHO05D004699 4.3e-48 194.5 105 84.8
Sabra08G0163600 Salix brachista HOM05D004069 ORTHO05D004699 9.5e-48 193.4 106 85.8
CsaV3_1G037430 Cucumis sativus L. HOM05D004069 ORTHO05D004699 2.1e-47 192.2 105 83.8
CiPaw.01G155300 Carya illinoinensis HOM05D004069 ORTHO05D004699 3.6e-47 191.4 105 83.8
GSVIVG01017834001 Vitis vinifera HOM05D004069 ORTHO05D004699 4.7e-47 191.0 105 82.9
Potri.008G196600 Populus trichocarpa HOM05D004069 ORTHO05D004699 6.1e-47 190.7 106 84.9
Atru.chr4.2722 Acer truncatum HOM05D004069 ORTHO05D004699 8.0e-47 190.3 105 82.9
PGR031G1560 Punica granatum HOM05D004069 ORTHO05D004699 8.0e-47 190.3 106 85.8
Eucgr.H03663 Eucalyptus grandis HOM05D004069 ORTHO05D004699 1.4e-46 189.5 105 84.8
Sed0000717 Sechium edule HOM05D004069 ORTHO05D004699 1.4e-46 189.5 105 82.9
CiPaw.02G087900 Carya illinoinensis HOM05D004069 ORTHO05D004699 1.8e-46 189.1 105 81.9
Ciclev10006197m.g Citrus clementina HOM05D004069 ORTHO05D004699 2.3e-46 188.7 105 81.9
Potri.010G026000 Populus trichocarpa HOM05D004069 ORTHO05D004699 2.3e-46 188.7 104 82.7
Sabra10G0013600 Salix brachista HOM05D004069 ORTHO05D004699 3.0e-46 188.3 104 83.7
TWI09G1514 Tripterygium wilfordii HOM05D004069 ORTHO05D004699 5.2e-46 187.6 105 80.0
TWI73G0788 Tripterygium wilfordii HOM05D004069 ORTHO05D004699 5.2e-46 187.6 105 80.0
Prupe.1G144300 Prunus persica HOM05D004069 ORTHO05D004699 1.2e-45 186.4 105 81.9
THA.LOC104818836 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 3.4e-45 184.9 105 79.0
Cc03_g02560 Coffea canephora HOM05D004069 ORTHO05D004699 4.4e-45 184.5 106 80.2
CARHR194200 Cardamine hirsuta HOM05D004069 ORTHO05D004699 5.8e-45 184.1 105 79.0
Thhalv10015085m.g Eutrema salsugineum HOM05D004069 ORTHO05D004699 5.8e-45 184.1 105 79.0
Sp6g25590 Schrenkiella parvula HOM05D004069 ORTHO05D004699 5.8e-45 184.1 105 79.0
BraA02t05469Z Brassica rapa HOM05D004069 ORTHO05D004699 7.5e-45 183.7 105 79.0
Carub.0003s0574 Capsella rubella HOM05D004069 ORTHO05D004699 9.8e-45 183.3 102 80.4
MD10G1048000 Malus domestica HOM05D004069 ORTHO05D004699 9.8e-45 183.3 105 79.0
MD13G1175600 Malus domestica HOM05D004069 ORTHO05D004699 9.8e-45 183.3 105 80.0
Nn4g26079 Nelumbo nucifera HOM05D004069 ORTHO05D004699 9.8e-45 183.3 104 79.8
PGR004G0388 Punica granatum HOM05D004069 ORTHO05D004699 9.8e-45 183.3 105 81.0
PGR031G3162 Punica granatum HOM05D004069 ORTHO05D004699 9.8e-45 183.3 106 82.1
AL6G30150 Arabidopsis lyrata HOM05D004069 ORTHO05D004699 1.3e-44 183.0 105 78.1
AT5G18800 Arabidopsis thaliana HOM05D004069 ORTHO05D004699 1.3e-44 183.0 105 78.1
BcaB01g05275 Brassica carinata HOM05D004069 ORTHO05D004699 1.3e-44 183.0 105 78.1
BcaC03g13618 Brassica carinata HOM05D004069 ORTHO05D004699 1.3e-44 183.0 105 78.1
A03p09140 Brassica napus HOM05D004069 ORTHO05D004699 1.3e-44 183.0 105 78.1
A10p20810 Brassica napus HOM05D004069 ORTHO05D004699 1.3e-44 183.0 105 78.1
C03p10670 Brassica napus HOM05D004069 ORTHO05D004699 1.3e-44 183.0 105 78.1
BolC2t06916H Brassica oleracea HOM05D004069 ORTHO05D004699 1.3e-44 183.0 105 78.1
BolC3t13543H Brassica oleracea HOM05D004069 ORTHO05D004699 1.3e-44 183.0 105 78.1
BraA03t10237Z Brassica rapa HOM05D004069 ORTHO05D004699 1.3e-44 183.0 105 78.1
BraA10t44146Z Brassica rapa HOM05D004069 ORTHO05D004699 1.3e-44 183.0 105 78.1
Carub.0006s1710 Capsella rubella HOM05D004069 ORTHO05D004699 1.3e-44 183.0 105 78.1
CARHR080830 Cardamine hirsuta HOM05D004069 ORTHO05D004699 1.3e-44 183.0 102 80.4
Nn3g21235 Nelumbo nucifera HOM05D004069 ORTHO05D004699 1.3e-44 183.0 104 79.8
RcHm_v2.0_Chr4g0420511 Rosa chinensis HOM05D004069 ORTHO05D004699 1.3e-44 183.0 105 80.0
Sp3g05220 Schrenkiella parvula HOM05D004069 ORTHO05D004699 1.3e-44 183.0 104 78.8
AL3G17240 Arabidopsis lyrata HOM05D004069 ORTHO05D004699 1.7e-44 182.6 102 80.4
CANSAT54G0205 Cannabis sativa HOM05D004069 ORTHO05D004699 1.7e-44 182.6 105 80.0
MD05G1041600 Malus domestica HOM05D004069 ORTHO05D004699 1.7e-44 182.6 105 80.0
Sed0022789 Sechium edule HOM05D004069 ORTHO05D004699 2.2e-44 182.2 106 79.2
Thhalv10021810m.g Eutrema salsugineum HOM05D004069 ORTHO05D004699 2.9e-44 181.8 103 79.6
Glyma.01G145000 Glycine max HOM05D004069 ORTHO05D004699 2.9e-44 181.8 105 80.0
BcaB08g36643 Brassica carinata HOM05D004069 ORTHO05D004699 3.7e-44 181.4 105 77.1
BcaC04g18646 Brassica carinata HOM05D004069 ORTHO05D004699 3.7e-44 181.4 105 76.2
BolC9t58640H Brassica oleracea HOM05D004069 ORTHO05D004699 3.7e-44 181.4 105 76.2
FAN17G0096 Fragaria x ananassa HOM05D004069 ORTHO05D004699 3.7e-44 181.4 105 79.0
Lj3g0025312 Lotus japonicus HOM05D004069 ORTHO05D004699 3.7e-44 181.4 105 80.0
VMungo0331G0279 Vigna mungo HOM05D004069 ORTHO05D004699 3.7e-44 181.4 105 79.0
Aa31LG11G10890 Aethionema arabicum HOM05D004069 ORTHO05D004699 4.9e-44 181.0 105 78.1
AT3G06310 Arabidopsis thaliana HOM05D004069 ORTHO05D004699 4.9e-44 181.0 102 79.4
BcaB01g04889 Brassica carinata HOM05D004069 ORTHO05D004699 4.9e-44 181.0 104 77.9
C09p57690 Brassica napus HOM05D004069 ORTHO05D004699 4.9e-44 181.0 105 76.2
FAN07G2596 Fragaria x ananassa HOM05D004069 ORTHO05D004699 8.3e-44 180.3 105 79.0
FAN22G1255 Fragaria x ananassa HOM05D004069 ORTHO05D004699 8.3e-44 180.3 105 79.0
Medtr8g035900 Medicago truncatula HOM05D004069 ORTHO05D004699 8.3e-44 180.3 105 79.0
VMungo0331G0995 Vigna mungo HOM05D004069 ORTHO05D004699 8.3e-44 180.3 105 78.1
Psat4g149640 Pisum sativum HOM05D004069 ORTHO05D004699 1.1e-43 179.9 107 78.5
CSS0012120 Camellia sinensis var. sinensis HOM05D004069 ORTHO05D004699 1.4e-43 179.5 104 77.9
Glyma.03G021800 Glycine max HOM05D004069 ORTHO05D004699 1.4e-43 179.5 105 79.0
ECA240G0933 Erigeron canadensis HOM05D004069 ORTHO05D004699 1.8e-43 179.1 105 77.1
FvH4_4g16930 Fragaria vesca HOM05D004069 ORTHO05D004699 1.8e-43 179.1 105 78.1
FAN12G1790 Fragaria x ananassa HOM05D004069 ORTHO05D004699 1.8e-43 179.1 105 78.1
FAN12G4073 Fragaria x ananassa HOM05D004069 ORTHO05D004699 1.8e-43 179.1 105 78.1
QL06p006731 Quercus lobata HOM05D004069 ORTHO05D004699 1.8e-43 179.1 108 75.9
Hund07638 Selenicereus undatus HOM05D004069 ORTHO05D004699 1.8e-43 179.1 105 78.1
Actinidia23443 Actinidia chinensis HOM05D004069 ORTHO05D004699 3.2e-43 178.3 104 77.9
vmacro08226 Vaccinium macrocarpon HOM05D004069 ORTHO05D004699 3.2e-43 178.3 104 76.9
Ah.01g005950 Amaranthus hybridus HOM05D004069 ORTHO05D004699 4.1e-43 177.9 95 85.3
TAR362G0867 Trochodendron aralioides HOM05D004069 ORTHO05D004699 5.4e-43 177.6 105 77.1
Nitab4.5_0001714g0140 Nicotiana tabacum HOM05D004069 ORTHO05D004699 7.0e-43 177.2 104 76.9
Nitab4.5_0009882g0010 Nicotiana tabacum HOM05D004069 ORTHO05D004699 7.0e-43 177.2 104 76.9
HanXRQChr13g0410171 Helianthus annuus HOM05D004069 ORTHO05D004699 9.2e-43 176.8 105 75.2
Actinidia32378 Actinidia chinensis HOM05D004069 ORTHO05D004699 1.2e-42 176.4 104 76.0
Hma1.2p1_0078F.1_g040910 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 1.2e-42 176.4 103 78.6
arahy.Tifrunner.gnm1.ann1.J8E67M Arachis hypogaea HOM05D004069 ORTHO05D004699 1.6e-42 176.0 105 76.2
EL10Ac9g21174 Beta vulgaris HOM05D004069 ORTHO05D004699 1.6e-42 176.0 108 75.9
CAN.G981.42 Capsicum annuum HOM05D004069 ORTHO05D004699 1.6e-42 176.0 104 76.9
Hma1.2p1_1671F.1_g296710 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 1.6e-42 176.0 103 78.6
TPR.G36608 Trifolium pratense HOM05D004069 ORTHO05D004699 2.0e-42 175.6 107 75.7
MD16G1177400 Malus domestica HOM05D004069 ORTHO05D004699 2.7e-42 175.3 105 76.2
Sc11g0003950 Simmondsia chinensis HOM05D004069 ORTHO05D004699 2.7e-42 175.3 105 75.2
arahy.Tifrunner.gnm1.ann1.EYX6XU Arachis hypogaea HOM05D004069 ORTHO05D004699 3.5e-42 174.9 105 75.2
A02p05100 Brassica napus HOM05D000415 ORTHO05D002707 3.5e-42 174.9 102 77.5
C02p10150 Brassica napus HOM05D000415 ORTHO05D002707 3.5e-42 174.9 102 77.5
Phvul.010G048500 Phaseolus vulgaris HOM05D004069 ORTHO05D004699 3.5e-42 174.9 105 75.2
Lsat_1_v5_gn_5_49720 Lactuca sativa HOM05D004069 ORTHO05D004699 4.6e-42 174.5 105 76.2
Peaxi162Scf00620g00918 Petunia axillaris HOM05D004069 ORTHO05D004699 6.0e-42 174.1 104 75.0
Actinidia40204 Actinidia chinensis HOM05D004069 ORTHO05D004699 7.8e-42 173.7 104 76.0
HanXRQChr03g0079731 Helianthus annuus HOM05D004069 ORTHO05D004699 7.8e-42 173.7 105 74.3
Lalb_Chr13g0291661 Lupinus albus HOM05D004069 ORTHO05D004699 7.8e-42 173.7 103 75.7
DCAR_002434 Daucus carota HOM05D004069 ORTHO05D004699 1.0e-41 173.3 106 75.5
THA.LOC104827125 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 1.0e-41 173.3 105 75.2
ATR0208G034 Amborella trichopoda HOM05D004069 ORTHO05D004699 1.3e-41 172.9 105 75.2
Gohir.A09G232800 Gossypium hirsutum HOM05D004069 ORTHO05D004699 1.3e-41 172.9 105 74.3
Solyc08g080240.3 Solanum lycopersicum HOM05D004069 ORTHO05D004699 1.3e-41 172.9 104 74.0
Sopen08g028590 Solanum pennellii HOM05D004069 ORTHO05D004699 1.3e-41 172.9 104 74.0
Actinidia00062 Actinidia chinensis HOM05D004069 ORTHO05D004699 2.3e-41 172.2 104 74.0
Sc19g0004820 Simmondsia chinensis HOM05D004069 ORTHO05D004699 2.3e-41 172.2 104 76.0
Thecc.04G274500 Theobroma cacao HOM05D004069 ORTHO05D004699 2.3e-41 172.2 105 73.3
AUR62022250 Chenopodium quinoa HOM05D004069 ORTHO05D004699 3.9e-41 171.4 95 80.0
Gohir.D10G164800 Gossypium hirsutum HOM05D004069 ORTHO05D004699 3.9e-41 171.4 105 74.3
Gorai.006G256800 Gossypium raimondii HOM05D004069 ORTHO05D004699 3.9e-41 171.4 105 73.3
Gorai.011G184000 Gossypium raimondii HOM05D004069 ORTHO05D004699 3.9e-41 171.4 107 73.8
CDE09G1375 Ceratophyllum demersum HOM05D004069 ORTHO05D004699 5.0e-41 171.0 105 71.4
PGSC0003DMG400022739 Solanum tuberosum HOM05D004069 ORTHO05D004699 5.0e-41 171.0 103 73.8
vmacro15276 Vaccinium macrocarpon HOM05D004069 ORTHO05D004699 5.0e-41 171.0 107 73.8
Gohir.D09G233900 Gossypium hirsutum HOM05D004069 ORTHO05D004699 6.6e-41 170.6 105 73.3
Lalb_Chr07g0189611 Lupinus albus HOM05D004069 ORTHO05D004699 8.6e-41 170.2 103 72.8
Hund24899 Selenicereus undatus HOM05D004069 ORTHO05D004699 1.1e-40 169.9 95 80.0
Zm00001eb396890 Zea mays HOM05D004069 ORTHO05D004699 1.5e-40 169.5 109 72.5
Aqoxy2G03156 Aquilegia oxysepala HOM05D004069 ORTHO05D004699 1.9e-40 169.1 104 74.0
Duzib151G0641 Durio zibethinus HOM05D004069 ORTHO05D004699 1.9e-40 169.1 105 72.4
Hma1.2p1_0643F.1_g194630 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 1.9e-40 169.1 108 74.1
Gohir.A10G103600 Gossypium hirsutum HOM05D004069 ORTHO05D004699 3.3e-40 168.3 105 73.3
PSO832G3814 Papaver somniferum HOM05D004069 ORTHO05D004699 4.3e-40 167.9 104 75.0
HPP92_001127 Vanilla planifolia HOM05D004069 ORTHO05D004699 5.6e-40 167.5 103 69.9
PSO210G4490 Papaver somniferum HOM05D004069 ORTHO05D004699 7.3e-40 167.2 104 74.0
Os03g0295500 Oryza sativa ssp. japonica HOM05D004069 ORTHO05D004699 9.5e-40 166.8 109 71.6
Duzib212G0467 Durio zibethinus HOM05D004069 ORTHO05D004699 1.2e-39 166.4 105 71.4
unitig_46.g18583 Utricularia gibba HOM05D004069 ORTHO05D004699 1.6e-39 166.0 107 68.2
Migut.F02022 Erythranthe guttata HOM05D004069 ORTHO05D004699 2.8e-39 165.2 106 70.8
Oeu007709.1 Olea europaea HOM05D004069 ORTHO05D004699 2.8e-39 165.2 104 70.2
Zm00001eb013640 Zea mays HOM05D004069 ORTHO05D004699 3.6e-39 164.9 115 69.6
Aqoxy5G00598 Aquilegia oxysepala HOM05D004069 ORTHO05D004699 4.7e-39 164.5 106 71.7
TAR633G1540 Trochodendron aralioides HOM05D004069 ORTHO05D004699 4.7e-39 164.5 86 83.7
Rhsim02G0014600 Rhododendron simsii HOM05D004069 ORTHO05D004699 6.2e-39 164.1 106 71.7
Duzib052G0156 Durio zibethinus HOM05D004069 ORTHO05D004699 2.3e-38 162.2 105 68.6
unitig_37.g12295 Utricularia gibba HOM05D004069 ORTHO05D004699 1.2e-37 159.8 98 69.4
MSTRG.9205 Avicennia marina HOM05D004069 ORTHO05D004699 1.5e-37 159.5 99 70.7
HanXRQChr03g0080011 Helianthus annuus HOM05D004069 ORTHO05D004699 1.3e-36 156.4 86 79.1
Rhsim04G0214300 Rhododendron simsii HOM05D004069 ORTHO05D004699 4.1e-35 151.4 167 49.1
SEGI_25177 Sequoiadendron giganteum HOM05D004069 ORTHO05D004699 7.0e-35 150.6 106 64.2
Haze_01035 Corylus avellana HOM05D004069 ORTHO05D004699 7.8e-34 147.1 87 80.5
Lsat_1_v5_gn_5_51221 Lactuca sativa HOM05D004069 ORTHO05D004699 1.4e-30 136.3 74 75.7
Pp3c10_17050 Physcomitrium patens HOM05D004069 ORTHO05D004699 4.0e-30 134.8 100 61.0
Pp3c3_33480 Physcomitrium patens HOM05D004069 ORTHO05D004699 8.9e-30 133.7 103 60.2
Mapoly0119s0025 Marchantia polymorpha HOM05D004069 ORTHO05D004699 1.2e-29 133.3 96 61.5
Pp3c4_6220 Physcomitrium patens HOM05D004069 ORTHO05D004699 1.2e-29 133.3 100 59.0
CBR_g31386 Chara braunii HOM05D004069 ORTHO05D004699 5.8e-29 131.0 101 59.4
Dinv44442 Davidia involucrata HOM05D004069 ORTHO05D004699 5.8e-29 131.0 97 62.9
THA.LOC104802732 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 2.9e-28 128.6 80 73.8
Dinv38340 Davidia involucrata HOM05D004069 ORTHO05D004699 3.7e-28 128.3 108 56.5
CDE02G1037 Ceratophyllum demersum HOM05D003181 ORTHO05D003689 2.4e-27 125.6 82 69.5
SMO146G0136 Selaginella moellendorffii HOM05D004069 ORTHO05D004699 4.7e-23 111.3 95 46.3
CSS0016731 Camellia sinensis var. sinensis HOM05D004069 ORTHO05D004699 1.5e-21 106.3 73 68.5
PGSC0003DMG400012496 Solanum tuberosum HOM05D004069 ORTHO05D004699 1.7e-20 102.8 71 64.8
ClCG03G006350 Citrullus lanatus HOM05D004069 ORTHO05D004699 2.9e-20 102.1 67 73.1
MELO3C035505.2 Cucumis melo HOM05D004069 ORTHO05D004699 1.1e-19 100.1 63 76.2
MCO10G196 Micromonas commoda HOM05D004069 ORTHO05D004699 1.1e-19 100.1 97 46.4
Ca_23836_v3 Cicer arietinum L. HOM05D004069 ORTHO05D004699 4.6e-18 94.7 63 71.4
HanXRQChr05g0152631 Helianthus annuus HOM05D001685 ORTHO05D007488 2.3e-17 92.4 77 59.7
PRCOL_00002240 Prasinoderma coloniale HOM05D004069 ORTHO05D004699 2.3e-17 92.4 90 45.6
Oeu055049.1 Olea europaea HOM05D005940 ORTHO05D007027 3.0e-17 92.0 69 63.8
CANSAT54G1967 Cannabis sativa HOM05D004069 ORTHO05D004699 6.6e-17 90.9 60 75.0
MBI18_g15803_MAGBIO Magnolia biondii HOM05D004069 ORTHO05D004699 6.6e-17 90.9 41 92.7
Ah.01g017180 Amaranthus hybridus HOM05D004069 ORTHO05D004699 1.1e-16 90.1 53 69.8
Solyc08g007805.1 Solanum lycopersicum HOM05D004069 ORTHO05D004699 9.6e-16 87.0 54 68.5
AUR62031965 Chenopodium quinoa HOM05D004069 ORTHO05D004699 1.6e-15 86.3 53 75.5
Lsat_1_v5_gn_5_162901 Lactuca sativa HOM05D004069 ORTHO05D004699 2.8e-15 85.5 63 68.3
SGA_v2.0_scaffold122G33247 Striga asiatica HOM05D002362 ORTHO05D002465 1.8e-14 82.8 58 65.5
Ah.01g017190 Amaranthus hybridus HOM05D004069 ORTHO05D004699 2.4e-14 82.4 51 78.4
VMungo0720G1128 Vigna mungo HOM05D004069 ORTHO05D004699 2.2e-12 75.9 65 60.0
VMungo0251G3681 Vigna mungo HOM05D039118 ORTHO05D004699 8.4e-12 73.9 44 77.3
Cre07.g333900 Chlamydomonas reinhardtii HOM05D004069 ORTHO05D004699 1.3e-07 60.1 94 31.9


User provided reference genes

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