Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B01188 Eucalyptus grandis HOM05D007586 ORTHO05D009554 8.5e-37 156.8 95 100.0
Ciclev10006319m.g Citrus clementina HOM05D007586 ORTHO05D009554 6.1e-11 70.9 34 91.2
TWI09G0380 Tripterygium wilfordii HOM05D007586 ORTHO05D009554 1.4e-10 69.7 39 79.5
Nn4g26123 Nelumbo nucifera HOM05D007586 ORTHO05D009554 3.0e-10 68.6 49 63.3
Cpa.g.sc16.72 Carica papaya HOM05D007586 ORTHO05D009554 6.8e-10 67.4 46 65.2
Atru.chr4.2702 Acer truncatum HOM05D007586 ORTHO05D009554 1.2e-09 66.6 32 90.6
Migut.G00284 Erythranthe guttata HOM05D007586 ORTHO05D009554 1.5e-09 66.2 32 90.6
Thecc.04G272400 Theobroma cacao HOM05D007586 ORTHO05D009554 2.0e-09 65.9 31 93.5
PGR031G0345 Punica granatum HOM05D007586 ORTHO05D009554 2.6e-09 65.5 51 56.9
Potri.008G198500 Populus trichocarpa HOM05D007586 ORTHO05D009554 3.4e-09 65.1 32 84.4
Sabra08G0162000 Salix brachista HOM05D007586 ORTHO05D009554 3.4e-09 65.1 32 84.4
Manes.03G188100 Manihot esculenta HOM05D007586 ORTHO05D009554 4.4e-09 64.7 46 58.7
BolC3t13546H Brassica oleracea HOM05D007586 ORTHO05D009554 5.7e-09 64.3 32 84.4
Duzib151G0133 Durio zibethinus HOM05D007586 ORTHO05D009554 5.7e-09 64.3 31 90.3
Gohir.A10G105800 Gossypium hirsutum HOM05D007586 ORTHO05D009554 5.7e-09 64.3 46 60.9
Gohir.D10G162600 Gossypium hirsutum HOM05D007586 ORTHO05D009554 5.7e-09 64.3 46 60.9
Gorai.011G181700 Gossypium raimondii HOM05D007586 ORTHO05D009554 5.7e-09 64.3 46 60.9
CANSAT01G2672 Cannabis sativa HOM05D007586 ORTHO05D009554 7.5e-09 63.9 34 76.5
Aa31LG11G10810 Aethionema arabicum HOM05D007586 ORTHO05D009554 9.8e-09 63.5 34 79.4
AL6G30270 Arabidopsis lyrata HOM05D007586 ORTHO05D009554 9.8e-09 63.5 32 84.4
AT5G18920 Arabidopsis thaliana HOM05D007586 ORTHO05D009554 9.8e-09 63.5 32 84.4
BcaB01g05279 Brassica carinata HOM05D007586 ORTHO05D009554 9.8e-09 63.5 32 84.4
BcaB08g36636 Brassica carinata HOM05D007586 ORTHO05D009554 9.8e-09 63.5 32 84.4
C03p10700 Brassica napus HOM05D007586 ORTHO05D009554 9.8e-09 63.5 32 84.4
Carub.0006s1722 Capsella rubella HOM05D007586 ORTHO05D009554 9.8e-09 63.5 32 84.4
Thhalv10015193m.g Eutrema salsugineum HOM05D007586 ORTHO05D009554 9.8e-09 63.5 32 84.4
Potri.010G028000 Populus trichocarpa HOM05D007586 ORTHO05D009554 9.8e-09 63.5 32 81.2
Sp6g25470 Schrenkiella parvula HOM05D007586 ORTHO05D009554 9.8e-09 63.5 32 84.4
Sopen01g032230 Solanum pennellii HOM05D007586 ORTHO05D009554 9.8e-09 63.5 46 58.7
BcaB01g04886 Brassica carinata HOM05D007586 ORTHO05D009554 1.3e-08 63.2 32 84.4
Nitab4.5_0000201g0230 Nicotiana tabacum HOM05D007586 ORTHO05D009554 1.3e-08 63.2 34 76.5
Nitab4.5_0009518g0010 Nicotiana tabacum HOM05D007586 ORTHO05D009554 1.3e-08 63.2 34 76.5
THA.LOC104802735 Tarenaya hassleriana HOM05D007586 ORTHO05D009554 1.3e-08 63.2 46 56.5
Actinidia00073 Actinidia chinensis HOM05D007586 ORTHO05D009554 1.7e-08 62.8 31 87.1
RcHm_v2.0_Chr4g0420101 Rosa chinensis HOM05D007586 ORTHO05D009554 1.7e-08 62.8 31 83.9
TAR636G1069 Trochodendron aralioides HOM05D007586 ORTHO05D009554 1.7e-08 62.8 31 87.1
A03p09170 Brassica napus HOM05D007586 ORTHO05D009554 2.2e-08 62.4 32 81.2
BraA03t10240Z Brassica rapa HOM05D007586 ORTHO05D009554 2.2e-08 62.4 32 81.2
CSS0032912 Camellia sinensis var. sinensis HOM05D007586 ORTHO05D009554 2.2e-08 62.4 31 87.1
COL.COLO4_13963 Corchorus olitorius HOM05D007586 ORTHO05D009554 2.2e-08 62.4 32 81.2
FvH4_4g16650 Fragaria vesca HOM05D007586 ORTHO05D009554 2.2e-08 62.4 31 83.9
FAN12G0362 Fragaria x ananassa HOM05D007586 ORTHO05D009554 2.2e-08 62.4 31 83.9
Hma1.2p1_0511F.1_g169220 Hydrangea macrophylla HOM05D000488 ORTHO05D000347 2.2e-08 62.4 33 81.8
QL06p006198 Quercus lobata HOM05D007586 ORTHO05D009554 2.2e-08 62.4 46 58.7
Dinv38351 Davidia involucrata HOM05D007586 ORTHO05D009554 2.8e-08 62.0 32 84.4
SalBow2G2177 Salvia bowleyana HOM05D007586 ORTHO05D009554 3.7e-08 61.6 32 78.1
CsaV3_6G005530 Cucumis sativus L. HOM05D007586 ORTHO05D009554 4.9e-08 61.2 48 60.4
BraA10t44138Z Brassica rapa HOM05D007586 ORTHO05D009554 6.3e-08 60.8 32 78.1
COL.COLO4_25734 Corchorus olitorius HOM05D007586 ORTHO05D009554 6.3e-08 60.8 32 78.1
CiPaw.02G089500 Carya illinoinensis HOM05D007586 ORTHO05D009554 8.3e-08 60.5 46 58.7
Haze_01009 Corylus avellana HOM05D007586 ORTHO05D009554 8.3e-08 60.5 46 58.7
CARHR194100 Cardamine hirsuta HOM05D007586 ORTHO05D009554 1.1e-07 60.1 31 80.6
Hma1.2p1_2025F.1_g311520 Hydrangea macrophylla HOM05D007586 ORTHO05D009554 1.1e-07 60.1 31 80.6
EL10Ac3g07262 Beta vulgaris HOM05D007586 ORTHO05D009554 1.4e-07 59.7 32 78.1
Cfa015540 Carpinus fangiana HOM05D007586 ORTHO05D009554 1.4e-07 59.7 46 56.5
unitig_749.g14058 Utricularia gibba HOM05D007586 ORTHO05D009554 1.4e-07 59.7 77 39.0
vmacro15289 Vaccinium macrocarpon HOM05D007586 ORTHO05D009554 1.4e-07 59.7 32 78.1
ClCG06G005620 Citrullus lanatus HOM05D007586 ORTHO05D009554 2.4e-07 58.9 31 77.4
Lalb_Chr18g0055891 Lupinus albus HOM05D007586 ORTHO05D009554 2.4e-07 58.9 32 78.1
Os05g0404300 Oryza sativa ssp. japonica HOM05D007586 ORTHO05D009554 2.4e-07 58.9 31 80.6
GSVIVG01017851001 Vitis vinifera HOM05D007586 ORTHO05D009554 2.4e-07 58.9 46 54.3
Ca_00589_v3 Cicer arietinum L. HOM05D002494 ORTHO05D002673 3.1e-07 58.5 33 72.7
Cc03_g02750 Coffea canephora HOM05D007586 ORTHO05D009554 3.1e-07 58.5 31 77.4
MBI19_g21636_MAGBIO Magnolia biondii HOM05D007586 ORTHO05D009554 3.1e-07 58.5 31 80.6
PSO832G2949 Papaver somniferum HOM05D007586 ORTHO05D009554 3.1e-07 58.5 31 77.4
Prupe.1G146700 Prunus persica HOM05D007586 ORTHO05D009554 3.1e-07 58.5 31 77.4
Sed0005131 Sechium edule HOM05D007586 ORTHO05D009554 4.1e-07 58.2 50 62.0
TPR.G18017 Trifolium pratense HOM05D007586 ORTHO05D009554 4.1e-07 58.2 46 56.5
AUR62018376 Chenopodium quinoa HOM05D000949 ORTHO05D001276 5.4e-07 57.8 32 75.0
ECA246G1660 Erigeron canadensis HOM05D007586 ORTHO05D009554 5.4e-07 57.8 46 50.0
MD13G1177700 Malus domestica HOM05D007586 ORTHO05D009554 5.4e-07 57.8 46 54.3
PSO210G0926 Papaver somniferum HOM05D007586 ORTHO05D009554 5.4e-07 57.8 31 77.4
Psat1g185520 Pisum sativum HOM05D007586 ORTHO05D009554 5.4e-07 57.8 32 75.0
ATR0626G363 Amborella trichopoda HOM05D007586 ORTHO05D009554 7.0e-07 57.4 31 77.4
DCAR_027132 Daucus carota HOM05D007586 ORTHO05D009554 7.0e-07 57.4 75 37.3
Nitab4.5_0000059g0210 Nicotiana tabacum HOM05D007586 ORTHO05D009554 9.2e-07 57.0 39 66.7
Ah.04g150810 Amaranthus hybridus HOM05D007586 ORTHO05D009554 1.2e-06 56.6 32 71.9
arahy.Tifrunner.gnm1.ann1.5VHG73 Arachis hypogaea HOM05D007586 ORTHO05D009554 1.2e-06 56.6 31 77.4
arahy.Tifrunner.gnm1.ann1.SH255N Arachis hypogaea HOM05D007586 ORTHO05D009554 1.2e-06 56.6 31 77.4
Lj6g0006659 Lotus japonicus HOM05D007586 ORTHO05D009554 1.6e-06 56.2 32 71.9
Medtr2g020920 Medicago truncatula HOM05D007586 ORTHO05D009554 1.6e-06 56.2 31 74.2
arahy.Tifrunner.gnm1.ann1.70FWSL Arachis hypogaea HOM05D007586 ORTHO05D009554 2.0e-06 55.8 31 74.2
Lj3g0017006 Lotus japonicus HOM05D007586 ORTHO05D009554 2.0e-06 55.8 31 74.2
A10p20750 Brassica napus HOM05D007586 ORTHO05D009554 5.9e-06 54.3 30 76.7
SEGI_37206 Sequoiadendron giganteum HOM05D007586 ORTHO05D009554 7.8e-06 53.9 31 67.7
Zm00001eb349880 Zea mays HOM05D007586 ORTHO05D009554 7.8e-06 53.9 31 67.7


User provided reference genes

Program Settings