Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B01143 Eucalyptus grandis HOM05D004860 ORTHO05D006366 2.1e-111 405.6 193 100.0
Eucgr.D02658 Eucalyptus grandis HOM05D004860 ORTHO05D006366 4.5e-77 291.6 153 91.5
Cpa.g.sc16.26 Carica papaya HOM05D004860 ORTHO05D006366 1.8e-70 269.6 153 81.0
PGR031G2771 Punica granatum HOM05D004860 ORTHO05D006366 2.4e-70 269.2 153 82.4
Potri.008G202300 Populus trichocarpa HOM05D004860 ORTHO05D006366 4.1e-70 268.5 153 83.0
Sabra08G0159200 Salix brachista HOM05D004860 ORTHO05D006366 4.1e-70 268.5 153 83.0
Haze_00965 Corylus avellana HOM05D004860 ORTHO05D006366 5.3e-70 268.1 153 80.4
QL06p004255 Quercus lobata HOM05D004860 ORTHO05D006366 4.5e-69 265.0 152 81.6
Manes.15G022900 Manihot esculenta HOM05D004860 ORTHO05D006366 5.9e-69 264.6 153 80.4
TWI73G0632 Tripterygium wilfordii HOM05D004860 ORTHO05D006366 1.7e-68 263.1 153 83.0
Ciclev10005293m.g Citrus clementina HOM05D004860 ORTHO05D006366 2.9e-68 262.3 153 79.7
CANSAT78G2493 Cannabis sativa HOM05D004860 ORTHO05D006366 8.5e-68 260.8 153 79.1
MELO3C006570.2 Cucumis melo HOM05D004860 ORTHO05D006366 8.5e-68 260.8 153 78.4
CiPaw.01G159800 Carya illinoinensis HOM05D004860 ORTHO05D006366 1.4e-67 260.0 153 78.4
ClCG05G005460 Citrullus lanatus HOM05D004860 ORTHO05D006366 1.4e-67 260.0 152 78.3
MD13G1182900 Malus domestica HOM05D004860 ORTHO05D006366 1.9e-67 259.6 153 80.4
MD16G1183500 Malus domestica HOM05D004860 ORTHO05D006366 2.5e-67 259.2 153 80.4
TAR636G2819 Trochodendron aralioides HOM05D004860 ORTHO05D006366 2.5e-67 259.2 153 78.4
CiPaw.02G092200 Carya illinoinensis HOM05D004860 ORTHO05D006366 3.2e-67 258.8 153 77.1
CsaV3_3G013760 Cucumis sativus L. HOM05D004860 ORTHO05D006366 3.2e-67 258.8 153 77.8
Duzib268G1873 Durio zibethinus HOM05D004860 ORTHO05D006366 4.2e-67 258.5 153 80.4
GSVIVG01017886001 Vitis vinifera HOM05D004860 ORTHO05D006366 4.2e-67 258.5 153 79.7
Thecc.04G221400 Theobroma cacao HOM05D004860 ORTHO05D006366 7.2e-67 257.7 153 79.1
FAN12G3962 Fragaria x ananassa HOM05D004860 ORTHO05D006366 1.2e-66 256.9 153 80.4
COL.COLO4_21645 Corchorus olitorius HOM05D004860 ORTHO05D006366 1.6e-66 256.5 153 78.4
Prupe.1G151200 Prunus persica HOM05D004860 ORTHO05D006366 2.1e-66 256.1 153 77.8
Sed0000368 Sechium edule HOM05D004860 ORTHO05D006366 2.7e-66 255.8 153 77.8
RcHm_v2.0_Chr4g0418381 Rosa chinensis HOM05D004860 ORTHO05D006366 4.7e-66 255.0 153 79.1
FvH4_4g14470 Fragaria vesca HOM05D004860 ORTHO05D006366 6.1e-66 254.6 153 79.7
Nn4g26191 Nelumbo nucifera HOM05D004860 ORTHO05D006366 6.1e-66 254.6 153 77.8
CSS0038220 Camellia sinensis var. sinensis HOM05D004860 ORTHO05D006366 1.0e-65 253.8 153 77.8
FAN07G1456 Fragaria x ananassa HOM05D004860 ORTHO05D006366 1.4e-65 253.4 153 77.8
Duzib212G0960 Durio zibethinus HOM05D004860 ORTHO05D006366 1.8e-65 253.1 159 77.4
Ah.07g203980 Amaranthus hybridus HOM05D004860 ORTHO05D006366 3.0e-65 252.3 153 76.5
FAN22G2324 Fragaria x ananassa HOM05D004860 ORTHO05D006366 3.9e-65 251.9 153 78.4
Cfa015580 Carpinus fangiana HOM05D004860 ORTHO05D006366 8.8e-65 250.8 154 77.9
MBI17_g12009_MAGBIO Magnolia biondii HOM05D004860 ORTHO05D006366 1.1e-64 250.4 159 73.6
AUR62030079 Chenopodium quinoa HOM05D004860 ORTHO05D006366 1.5e-64 250.0 153 75.2
Lj4g0005512 Lotus japonicus HOM05D004860 ORTHO05D006366 1.5e-64 250.0 153 75.8
Ca_21591_v3 Cicer arietinum L. HOM05D004860 ORTHO05D006366 2.0e-64 249.6 153 76.5
CARHR193940 Cardamine hirsuta HOM05D004860 ORTHO05D006366 2.6e-64 249.2 153 75.8
TAR365G0160 Trochodendron aralioides HOM05D004860 ORTHO05D006366 2.6e-64 249.2 153 75.8
Lalb_Chr07g0177321 Lupinus albus HOM05D004860 ORTHO05D006366 3.3e-64 248.8 153 74.5
Actinidia40192 Actinidia chinensis HOM05D004860 ORTHO05D006366 4.4e-64 248.4 153 74.5
TPR.G20138 Trifolium pratense HOM05D004860 ORTHO05D006366 4.4e-64 248.4 153 75.2
HanXRQChr09g0248101 Helianthus annuus HOM05D004860 ORTHO05D006366 5.7e-64 248.1 153 75.8
Hund12197 Selenicereus undatus HOM05D004860 ORTHO05D000105 7.4e-64 247.7 153 76.5
Aa31LG11G10670 Aethionema arabicum HOM05D004860 ORTHO05D006366 9.7e-64 247.3 153 74.5
Gohir.A05G316600 Gossypium hirsutum HOM05D004860 ORTHO05D006366 9.7e-64 247.3 153 76.5
PSO407G0112 Papaver somniferum HOM05D004860 ORTHO05D006366 9.7e-64 247.3 153 77.1
THA.LOC104818790 Tarenaya hassleriana HOM05D004860 ORTHO05D006366 1.3e-63 246.9 153 75.2
Gohir.D05G318100 Gossypium hirsutum HOM05D004860 ORTHO05D006366 2.2e-63 246.1 153 77.1
Gorai.009G340700 Gossypium raimondii HOM05D004860 ORTHO05D006366 2.2e-63 246.1 153 77.1
Psat4g031440 Pisum sativum HOM05D004860 ORTHO05D006366 2.2e-63 246.1 153 73.9
arahy.Tifrunner.gnm1.ann1.K193BP Arachis hypogaea HOM05D004860 ORTHO05D006366 2.8e-63 245.7 153 75.8
arahy.Tifrunner.gnm1.ann1.PDW3QZ Arachis hypogaea HOM05D004860 ORTHO05D006366 2.8e-63 245.7 153 75.8
PSO170G1688 Papaver somniferum HOM05D004860 ORTHO05D006366 2.8e-63 245.7 153 76.5
Medtr4g117310 Medicago truncatula HOM05D004860 ORTHO05D006366 6.3e-63 244.6 153 73.9
Atru.chr4.2574 Acer truncatum HOM05D004860 ORTHO05D006366 8.2e-63 244.2 153 72.5
Carub.0006s1737 Capsella rubella HOM05D004860 ORTHO05D006366 1.1e-62 243.8 153 73.9
AT5G19050 Arabidopsis thaliana HOM05D004860 ORTHO05D006366 1.4e-62 243.4 153 73.9
Glyma.17G017300 Glycine max HOM05D004860 ORTHO05D006366 1.4e-62 243.4 153 73.9
Thhalv10013904m.g Eutrema salsugineum HOM05D004860 ORTHO05D006366 1.8e-62 243.0 153 73.9
AUR62038223 Chenopodium quinoa HOM05D004860 ORTHO05D006366 2.4e-62 242.7 153 73.2
Aqoxy2G03261 Aquilegia oxysepala HOM05D004860 ORTHO05D006366 3.1e-62 242.3 153 73.2
BolC3t13554H Brassica oleracea HOM05D004860 ORTHO05D006366 3.1e-62 242.3 153 73.2
Glyma.07G256800 Glycine max HOM05D004860 ORTHO05D006366 3.1e-62 242.3 153 73.9
Sp6g25330 Schrenkiella parvula HOM05D004860 ORTHO05D006366 3.1e-62 242.3 153 73.9
CDE02G3435 Ceratophyllum demersum HOM05D004860 ORTHO05D006366 4.1e-62 241.9 153 71.9
BcaB08g36622 Brassica carinata HOM05D004860 ORTHO05D006366 5.3e-62 241.5 153 73.9
ECA240G4413 Erigeron canadensis HOM05D004860 ORTHO05D006366 5.3e-62 241.5 153 73.2
Phvul.003G093000 Phaseolus vulgaris HOM05D004860 ORTHO05D006366 5.3e-62 241.5 153 73.2
BcaB01g05289 Brassica carinata HOM05D004860 ORTHO05D006366 7.0e-62 241.1 153 73.2
Cc03_g03100 Coffea canephora HOM05D004860 ORTHO05D006366 7.0e-62 241.1 153 73.2
Solyc01g080140.3 Solanum lycopersicum HOM05D004860 ORTHO05D006366 7.0e-62 241.1 153 73.2
Sopen01g031920 Solanum pennellii HOM05D004860 ORTHO05D006366 7.0e-62 241.1 153 73.2
THA.LOC104822311 Tarenaya hassleriana HOM05D004860 ORTHO05D006366 7.0e-62 241.1 153 73.2
BcaC04g18624 Brassica carinata HOM05D004860 ORTHO05D006366 9.1e-62 240.7 153 73.9
A10p20640 Brassica napus HOM05D004860 ORTHO05D006366 9.1e-62 240.7 153 73.9
C09p57430 Brassica napus HOM05D004860 ORTHO05D006366 9.1e-62 240.7 153 73.9
BolC9t58612H Brassica oleracea HOM05D004860 ORTHO05D006366 9.1e-62 240.7 153 73.9
BraA10t44127Z Brassica rapa HOM05D004860 ORTHO05D006366 9.1e-62 240.7 153 73.9
BcaB01g04878 Brassica carinata HOM05D004860 ORTHO05D006366 1.2e-61 240.4 153 72.5
SEGI_28969 Sequoiadendron giganteum HOM05D004860 ORTHO05D006366 3.5e-61 238.8 153 72.5
AL6G30430 Arabidopsis lyrata HOM05D004860 ORTHO05D006366 4.5e-61 238.4 153 72.5
SalBow5G0733 Salvia bowleyana HOM05D004860 ORTHO05D006366 5.9e-61 238.0 159 71.7
SalBow5G4413 Salvia bowleyana HOM05D004860 ORTHO05D006366 5.9e-61 238.0 159 71.7
BraA03t10247Z Brassica rapa HOM05D004860 ORTHO05D006366 1.3e-60 236.9 153 71.9
Ah.13g074180 Amaranthus hybridus HOM05D004860 ORTHO05D006366 1.7e-60 236.5 153 73.9
FAN17G0307 Fragaria x ananassa HOM05D004860 ORTHO05D006366 1.7e-60 236.5 139 79.9
Migut.N00151 Erythranthe guttata HOM05D004860 ORTHO05D006366 2.2e-60 236.1 153 71.2
Dinv38393 Davidia involucrata HOM05D001530 ORTHO05D004168 3.8e-60 235.3 146 77.4
Os07g0211800 Oryza sativa ssp. japonica HOM05D004860 ORTHO05D006366 3.8e-60 235.3 153 71.2
EL10Ac3g06352 Beta vulgaris HOM05D004860 ORTHO05D006366 6.5e-60 234.6 190 61.6
Lj3C761T9 Lonicera japonica HOM05D004860 ORTHO05D006366 6.5e-60 234.6 153 70.6
MSTRG.24756 Avicennia marina HOM05D004860 ORTHO05D006366 8.5e-60 234.2 153 70.6
Zm00001eb303280 Zea mays HOM05D004860 ORTHO05D006366 8.5e-60 234.2 153 70.6
Nitab4.5_0001247g0010 Nicotiana tabacum HOM05D004860 ORTHO05D006366 1.9e-59 233.0 153 71.9
Oeu029304.1 Olea europaea HOM05D004860 ORTHO05D006366 2.5e-59 232.6 153 69.9
Mapoly0095s0018 Marchantia polymorpha HOM05D004860 ORTHO05D006366 2.1e-58 229.6 153 71.2
Oeu017197.2 Olea europaea HOM05D004860 ORTHO05D006366 2.7e-58 229.2 154 70.8
C03p10800 Brassica napus HOM05D004860 ORTHO05D006366 1.5e-56 223.4 144 72.9
unitig_8.g2879 Utricularia gibba HOM05D004860 ORTHO05D006366 3.3e-56 222.2 153 67.3
Migut.G00288 Erythranthe guttata HOM05D004860 ORTHO05D006366 3.7e-55 218.8 153 65.4
AagrBONN_evm.TU.Sc2ySwM_117.2400 Anthoceros agrestis HOM05D004860 ORTHO05D006366 1.6e-53 213.4 152 64.5
Pp3c4_4720 Physcomitrium patens HOM05D004860 ORTHO05D006366 2.6e-53 212.6 153 63.4
Peaxi162Scf01766g00011 Petunia axillaris HOM05D004860 ORTHO05D006366 5.9e-53 211.5 153 67.3
Actinidia12990 Actinidia chinensis HOM05D004860 ORTHO05D006366 7.7e-53 211.1 153 67.3
CAN.G183.30 Capsicum annuum HOM05D004860 ORTHO05D006366 2.5e-51 206.1 153 66.0
Lsat_1_v5_gn_7_67361 Lactuca sativa HOM05D004860 ORTHO05D006366 3.2e-51 205.7 153 66.0
A03p09270 Brassica napus HOM05D004860 ORTHO05D006366 1.2e-50 203.8 136 71.3
Hund22791 Selenicereus undatus HOM05D004860 ORTHO05D006366 8.8e-49 197.6 132 69.7
SMO119G0283 Selaginella moellendorffii HOM05D004860 ORTHO05D006366 1.2e-48 197.2 153 63.4
VMungo1215G0712 Vigna mungo HOM05D004860 ORTHO05D006366 2.7e-45 186.0 109 75.2
Cc02_g31730 Coffea canephora HOM05D004860 ORTHO05D006366 2.5e-43 179.5 108 74.1
Dinv44480 Davidia involucrata HOM05D001530 ORTHO05D004168 1.7e-39 166.8 145 59.3
Nn1g02160 Nelumbo nucifera HOM05D004860 ORTHO05D006366 2.0e-37 159.8 105 71.4
Lj6A565G28 Lonicera japonica HOM05D004860 ORTHO05D006366 3.5e-37 159.1 109 68.8
Rhsim04G0207200 Rhododendron simsii HOM05D004860 ORTHO05D006366 7.7e-37 157.9 104 73.1
vmacro08274 Vaccinium macrocarpon HOM05D004860 ORTHO05D006366 1.0e-36 157.5 104 71.2
SalBow2G3077 Salvia bowleyana HOM05D004860 ORTHO05D006366 4.0e-33 145.6 143 52.4
Manes.03G184900 Manihot esculenta HOM05D004860 ORTHO05D006366 1.4e-30 137.1 87 72.4
TWI53G0789 Tripterygium wilfordii HOM05D004860 ORTHO05D006366 3.2e-30 136.0 86 74.4
Cc09_g08330 Coffea canephora HOM05D004860 ORTHO05D006366 4.1e-30 135.6 112 58.9
Cc01_g03740 Coffea canephora HOM05D004860 ORTHO05D006366 2.1e-26 123.2 117 53.8
ATR0626G115 Amborella trichopoda HOM05D004860 ORTHO05D006366 2.8e-26 122.9 83 68.7
SHI00370 Sapria himalayana HOM05D004860 ORTHO05D000023 4.7e-26 122.1 83 68.7
SGA_v2.0_scaffold166G38376 Striga asiatica HOM05D004860 ORTHO05D006366 4.4e-24 115.5 83 66.3
CBR_g23274 Chara braunii HOM05D004860 ORTHO05D006366 5.4e-22 108.6 104 50.0
Actinidia23474 Actinidia chinensis HOM05D004860 ORTHO05D006366 2.7e-21 106.3 62 75.8
DCAR_002416 Daucus carota HOM05D004860 ORTHO05D006366 6.0e-21 105.1 86 57.0
DCAR_030597 Daucus carota HOM05D004860 ORTHO05D006366 1.2e-16 90.9 52 78.8
PRCOL_00003006 Prasinoderma coloniale HOM05D004860 ORTHO05D006366 1.5e-16 90.5 144 41.7
Lj6C565T4 Lonicera japonica HOM05D004860 ORTHO05D006366 2.9e-15 86.3 54 68.5
Cc00_g00380 Coffea canephora HOM05D004860 ORTHO05D006366 4.1e-14 82.4 53 71.7
HPP92_027343 Vanilla planifolia HOM05D004860 ORTHO05D006366 9.2e-14 81.3 71 53.5
Sc13g0003950 Simmondsia chinensis HOM05D004860 ORTHO05D006366 1.2e-10 70.9 46 76.1
Cc11_g00440 Coffea canephora HOM05D004860 ORTHO05D005444 8.1e-10 68.2 36 80.6
VMungo1215G0515 Vigna mungo HOM05D004860 ORTHO05D006366 1.5e-08 63.9 46 67.4
Cc04_g14790 Coffea canephora HOM05D004860 ORTHO05D006366 5.4e-06 55.5 29 75.9


User provided reference genes

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