Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B01020 Eucalyptus grandis HOM05D002297 ORTHO05D002385 2.4e-40 168.3 80 100.0
Sabra10G0060900 Salix brachista HOM05D002297 ORTHO05D002385 2.3e-11 72.0 45 66.7
Haze_11225 Corylus avellana HOM05D002297 ORTHO05D002385 3.0e-11 71.6 46 67.4
QL06p001177 Quercus lobata HOM05D002297 ORTHO05D002385 3.0e-11 71.6 46 69.6
MSTRG.9952 Avicennia marina HOM05D002297 ORTHO05D002385 4.0e-11 71.2 53 64.2
Eucgr.B01021 Eucalyptus grandis HOM05D002297 ORTHO05D002385 4.0e-11 71.2 45 68.9
Eucgr.L03228 Eucalyptus grandis HOM05D002297 ORTHO05D002385 4.0e-11 71.2 45 68.9
Potri.010G082300 Populus trichocarpa HOM05D002297 ORTHO05D002385 6.7e-11 70.5 59 57.6
Rhsim02G0028600 Rhododendron simsii HOM05D002297 ORTHO05D002385 6.7e-11 70.5 45 66.7
FAN12G3816 Fragaria x ananassa HOM05D002297 ORTHO05D002385 1.1e-10 69.7 54 59.3
MD16G1199000 Malus domestica HOM05D002297 ORTHO05D002385 1.1e-10 69.7 45 66.7
Lj5g0001502 Lotus japonicus HOM05D002297 ORTHO05D002385 1.5e-10 69.3 45 68.9
Lj6g0025608 Lotus japonicus HOM05D002297 ORTHO05D002385 1.5e-10 69.3 45 68.9
MD13G1198800 Malus domestica HOM05D002297 ORTHO05D002385 1.5e-10 69.3 45 64.4
PGR142G1644 Punica granatum HOM05D002297 ORTHO05D002385 1.5e-10 69.3 45 66.7
Ciclev10005453m.g Citrus clementina HOM05D002297 ORTHO05D002385 2.0e-10 68.9 45 62.2
FvH4_4g01061 Fragaria vesca HOM05D002297 ORTHO05D002385 2.0e-10 68.9 45 64.4
arahy.Tifrunner.gnm1.ann1.BH7WK9 Arachis hypogaea HOM05D002297 ORTHO05D002385 2.6e-10 68.6 45 66.7
arahy.Tifrunner.gnm1.ann1.RQXR90 Arachis hypogaea HOM05D002297 ORTHO05D002385 2.6e-10 68.6 45 66.7
Cpa.g.sc44.117 Carica papaya HOM05D002297 ORTHO05D002385 2.6e-10 68.6 45 64.4
FAN17G0413 Fragaria x ananassa HOM05D002297 ORTHO05D002385 2.6e-10 68.6 45 64.4
PSO210G7048 Papaver somniferum HOM05D002297 ORTHO05D002385 2.6e-10 68.6 45 64.4
Phvul.007G278100 Phaseolus vulgaris HOM05D002297 ORTHO05D002385 2.6e-10 68.6 44 65.9
Prupe.1G020600 Prunus persica HOM05D002297 ORTHO05D002385 2.6e-10 68.6 45 64.4
ECA236G4228 Erigeron canadensis HOM05D002297 ORTHO05D002385 3.3e-10 68.2 45 64.4
Nn1g02438 Nelumbo nucifera HOM05D002297 ORTHO05D002385 3.3e-10 68.2 44 68.2
Ah.13g071770 Amaranthus hybridus HOM05D002297 ORTHO05D002385 4.4e-10 67.8 45 64.4
ClCG06G006460 Citrullus lanatus HOM05D002297 ORTHO05D002385 4.4e-10 67.8 62 53.2
COL.COLO4_21558 Corchorus olitorius HOM05D002297 ORTHO05D002385 4.4e-10 67.8 45 60.0
ECA236G1644 Erigeron canadensis HOM05D002297 ORTHO05D002385 4.4e-10 67.8 44 65.9
TWI73G0082 Tripterygium wilfordii HOM05D002297 ORTHO05D002385 4.4e-10 67.8 45 62.2
vmacro15369 Vaccinium macrocarpon HOM05D002297 ORTHO05D002385 4.4e-10 67.8 45 66.7
Atru.chr4.2381 Acer truncatum HOM05D002297 ORTHO05D002385 5.7e-10 67.4 45 62.2
Atru.chr4.2405 Acer truncatum HOM05D002297 ORTHO05D002385 5.7e-10 67.4 45 62.2
Atru.ctg752_3.15 Acer truncatum HOM05D002297 ORTHO05D002385 5.7e-10 67.4 45 62.2
Cfa008453 Carpinus fangiana HOM05D002297 ORTHO05D002385 5.7e-10 67.4 46 65.2
Cc03_g04420 Coffea canephora HOM05D002297 ORTHO05D002385 5.7e-10 67.4 45 64.4
SGA_v2.0_scaffold353G49721 Striga asiatica HOM05D002297 ORTHO05D002385 7.5e-10 67.0 45 71.1
VMungo0720G0724 Vigna mungo HOM05D002297 ORTHO05D002385 7.5e-10 67.0 43 65.1
Duzib052G0105 Durio zibethinus HOM05D002297 ORTHO05D002385 9.7e-10 66.6 45 57.8
Duzib052G0132 Durio zibethinus HOM05D002297 ORTHO05D002385 9.7e-10 66.6 45 57.8
PSO832G2818 Papaver somniferum HOM05D002297 ORTHO05D002385 9.7e-10 66.6 45 64.4
TAR636G3074 Trochodendron aralioides HOM05D002297 ORTHO05D002385 9.7e-10 66.6 45 64.4
CAN.G1572.3 Capsicum annuum HOM05D002297 ORTHO05D002385 1.3e-09 66.2 45 64.4
HanXRQChr05g0137091 Helianthus annuus HOM05D002297 ORTHO05D002385 1.3e-09 66.2 45 62.2
Hma1.2p1_0549F.1_g176950 Hydrangea macrophylla HOM05D002297 ORTHO05D002385 1.3e-09 66.2 45 62.2
Sopen06g019120 Solanum pennellii HOM05D002297 ORTHO05D002385 1.3e-09 66.2 44 65.9
EL10Ac3g06447 Beta vulgaris HOM05D002297 ORTHO05D002385 1.7e-09 65.9 45 62.2
Oeu017774.1 Olea europaea HOM05D002297 ORTHO05D002385 1.7e-09 65.9 45 60.0
PGSC0003DMG400006452 Solanum tuberosum HOM05D002297 ORTHO05D002385 1.7e-09 65.9 45 64.4
Thecc.04G237900 Theobroma cacao HOM05D002297 ORTHO05D002385 1.7e-09 65.9 45 60.0
HPP92_024353 Vanilla planifolia HOM05D002297 ORTHO05D002385 1.7e-09 65.9 45 62.2
Actinidia08464 Actinidia chinensis HOM05D002297 ORTHO05D002385 2.2e-09 65.5 62 56.5
CiPaw.02G121500 Carya illinoinensis HOM05D002297 ORTHO05D002385 2.2e-09 65.5 46 60.9
CDE05G3068 Ceratophyllum demersum HOM05D002297 ORTHO05D002385 2.2e-09 65.5 45 57.8
Lsat_1_v5_gn_8_66120 Lactuca sativa HOM05D002297 ORTHO05D002385 2.2e-09 65.5 56 57.1
Glyma.10G003200 Glycine max HOM05D002297 ORTHO05D002385 2.8e-09 65.1 44 63.6
Lj6A644T31 Lonicera japonica HOM05D002297 ORTHO05D002385 2.8e-09 65.1 45 62.2
Lj6C645T4 Lonicera japonica HOM05D002297 ORTHO05D002385 2.8e-09 65.1 45 62.2
Manes.03G173700 Manihot esculenta HOM05D002297 ORTHO05D002385 2.8e-09 65.1 45 60.0
Medtr1g041390 Medicago truncatula HOM05D002297 ORTHO05D002385 2.8e-09 65.1 45 60.0
GSVIVG01018036001 Vitis vinifera HOM05D002297 ORTHO05D002385 2.8e-09 65.1 61 50.8
CSS0028283 Camellia sinensis var. sinensis HOM05D002297 ORTHO05D002385 3.7e-09 64.7 45 57.8
CiPaw.01G195900 Carya illinoinensis HOM05D002297 ORTHO05D002385 3.7e-09 64.7 46 65.2
AUR62034689 Chenopodium quinoa HOM05D002297 ORTHO05D002385 3.7e-09 64.7 45 60.0
Migut.G00380 Erythranthe guttata HOM05D002297 ORTHO05D002385 3.7e-09 64.7 45 62.2
MBI01_g45161_MAGBIO Magnolia biondii HOM05D002297 ORTHO05D002385 3.7e-09 64.7 45 60.0
Nitab4.5_0004743g0040 Nicotiana tabacum HOM05D002297 ORTHO05D002385 3.7e-09 64.7 44 63.6
PGSC0003DMG400016268 Solanum tuberosum HOM05D002297 ORTHO05D002385 3.7e-09 64.7 44 63.6
Aa31LG5G3430 Aethionema arabicum HOM05D002297 ORTHO05D002385 4.8e-09 64.3 46 58.7
ATR0665G125 Amborella trichopoda HOM05D002297 ORTHO05D002385 4.8e-09 64.3 45 57.8
CDE02G2392 Ceratophyllum demersum HOM05D002297 ORTHO05D002385 4.8e-09 64.3 45 55.6
Nitab4.5_0000321g0220 Nicotiana tabacum HOM05D002297 ORTHO05D002385 4.8e-09 64.3 44 63.6
Nitab4.5_0004412g0010 Nicotiana tabacum HOM05D002297 ORTHO05D002385 4.8e-09 64.3 44 63.6
Aqoxy2G03456 Aquilegia oxysepala HOM05D002297 ORTHO05D002385 6.3e-09 63.9 45 60.0
AT5G43860 Arabidopsis thaliana HOM05D002297 ORTHO05D002385 6.3e-09 63.9 45 57.8
Thhalv10003248m.g Eutrema salsugineum HOM05D002297 ORTHO05D002385 6.3e-09 63.9 45 60.0
Lalb_Chr19g0127931 Lupinus albus HOM05D002297 ORTHO05D002385 6.3e-09 63.9 44 63.6
RhsimUnG0024600 Rhododendron simsii HOM05D002297 ORTHO05D002385 6.3e-09 63.9 44 61.4
SalBow2G0430 Salvia bowleyana HOM05D002297 ORTHO05D002385 6.3e-09 63.9 45 60.0
Hund12140 Selenicereus undatus HOM05D002297 ORTHO05D002385 6.3e-09 63.9 45 55.6
AL8G16280 Arabidopsis lyrata HOM05D002297 ORTHO05D002385 8.2e-09 63.5 45 57.8
BcaB07g30554 Brassica carinata HOM05D002297 ORTHO05D002385 8.2e-09 63.5 45 60.0
BcaC03g16610 Brassica carinata HOM05D002297 ORTHO05D002385 8.2e-09 63.5 45 57.8
A02p28090 Brassica napus HOM05D002297 ORTHO05D002385 8.2e-09 63.5 45 57.8
C02p44390 Brassica napus HOM05D002297 ORTHO05D002385 8.2e-09 63.5 45 57.8
BolC2t10484H Brassica oleracea HOM05D002297 ORTHO05D002385 8.2e-09 63.5 45 57.8
BraA02t07845Z Brassica rapa HOM05D002297 ORTHO05D002385 8.2e-09 63.5 45 57.8
CsaV3_2G013440 Cucumis sativus L. HOM05D002297 ORTHO05D002385 8.2e-09 63.5 45 62.2
Psat6g103560 Pisum sativum HOM05D002297 ORTHO05D002385 8.2e-09 63.5 45 57.8
Sp2g08660 Schrenkiella parvula HOM05D002297 ORTHO05D002385 8.2e-09 63.5 45 60.0
Medtr1g041385 Medicago truncatula HOM05D002297 ORTHO05D002385 1.1e-08 63.2 44 63.6
Sed0026619 Sechium edule HOM05D002297 ORTHO05D002385 1.1e-08 63.2 43 67.4
Solyc06g053980.3 Solanum lycopersicum HOM05D002297 ORTHO05D002385 1.1e-08 63.2 44 61.4
AUR62024085 Chenopodium quinoa HOM05D002297 ORTHO05D002385 1.4e-08 62.8 45 57.8
Peaxi162Scf00192g01618 Petunia axillaris HOM05D002297 ORTHO05D002385 1.4e-08 62.8 44 63.6
TPR.G32760 Trifolium pratense HOM05D002297 ORTHO05D002385 1.4e-08 62.8 45 57.8
TAR636G0339 Trochodendron aralioides HOM05D002297 ORTHO05D002385 1.4e-08 62.8 45 60.0
CANSAT78G1821 Cannabis sativa HOM05D002297 ORTHO05D002385 1.8e-08 62.4 45 55.6
CARHR179570 Cardamine hirsuta HOM05D002297 ORTHO05D002385 1.8e-08 62.4 45 57.8
Cc03_g04230 Coffea canephora HOM05D002297 ORTHO05D002385 1.8e-08 62.4 45 62.2
Lalb_Chr19g0127911 Lupinus albus HOM05D002297 ORTHO05D002385 1.8e-08 62.4 44 61.4
PSO210G0891 Papaver somniferum HOM05D002297 ORTHO05D002385 1.8e-08 62.4 44 59.1
Sc13g0004700 Simmondsia chinensis HOM05D002297 ORTHO05D002385 1.8e-08 62.4 45 55.6
SEGI_15049 Sequoiadendron giganteum HOM05D002297 ORTHO05D002385 2.4e-08 62.0 45 62.2
unitig_32.g10822 Utricularia gibba HOM05D002297 ORTHO05D002385 2.4e-08 62.0 45 55.6
Carub.0008s0475 Capsella rubella HOM05D002297 ORTHO05D002385 3.1e-08 61.6 45 55.6
Sc19g0003970 Simmondsia chinensis HOM05D002297 ORTHO05D002385 3.1e-08 61.6 45 64.4
DCAR_024190 Daucus carota HOM05D002297 ORTHO05D002385 4.1e-08 61.2 43 60.5
Gohir.A10G124100 Gossypium hirsutum HOM05D002297 ORTHO05D002385 4.1e-08 61.2 45 55.6
Gohir.D10G152933 Gossypium hirsutum HOM05D002297 ORTHO05D002385 4.1e-08 61.2 45 55.6
Gorai.011G170100 Gossypium raimondii HOM05D002297 ORTHO05D002385 4.1e-08 61.2 45 55.6
TPR.G18666 Trifolium pratense HOM05D002297 ORTHO05D002385 4.1e-08 61.2 45 55.6
BcaB07g30999 Brassica carinata HOM05D002297 ORTHO05D002385 5.3e-08 60.8 45 62.2
A09p20590 Brassica napus HOM05D002297 ORTHO05D002385 5.3e-08 60.8 45 57.8
PSO170G4947 Papaver somniferum HOM05D002297 ORTHO05D002385 5.3e-08 60.8 44 56.8
Sopen09g031460 Solanum pennellii HOM05D002297 ORTHO05D002385 5.3e-08 60.8 45 60.0
Solyc09g082600.3 Solanum lycopersicum HOM05D002297 ORTHO05D002385 9.1e-08 60.1 45 60.0
PGR142G3051 Punica granatum HOM05D002297 ORTHO05D002385 1.2e-07 59.7 45 64.4
PSO675G2441 Papaver somniferum HOM05D002297 ORTHO05D002385 1.6e-07 59.3 60 50.0
BraA09t37665Z Brassica rapa HOM05D002297 ORTHO05D002385 2.0e-07 58.9 45 55.6
TPR.G19819 Trifolium pratense HOM05D002297 ORTHO05D002385 2.7e-07 58.5 45 53.3
BcaC04g21898 Brassica carinata HOM05D002297 ORTHO05D002385 3.5e-07 58.2 45 55.6
C09p26030 Brassica napus HOM05D002297 ORTHO05D002385 3.5e-07 58.2 45 55.6
BolC9t55506H Brassica oleracea HOM05D002297 ORTHO05D002385 3.5e-07 58.2 45 55.6
SEGI_36532 Sequoiadendron giganteum HOM05D002297 ORTHO05D002385 3.5e-07 58.2 45 55.6
CAN.G231.16 Capsicum annuum HOM05D002297 ORTHO05D002385 5.9e-07 57.4 44 56.8
FvH4_4g00030 Fragaria vesca HOM05D002297 ORTHO05D002385 1.0e-06 56.6 45 57.8
PSO017G2211 Papaver somniferum HOM05D002297 ORTHO05D002385 2.2e-06 55.5 45 55.6
Lsat_1_v5_gn_8_66180 Lactuca sativa HOM05D002297 ORTHO05D002385 2.9e-06 55.1 43 58.1
CBR_g50396 Chara braunii HOM05D002297 ORTHO05D002385 3.8e-06 54.7 49 55.1
MD03G1259000 Malus domestica HOM05D002297 ORTHO05D002385 5.0e-06 54.3 46 60.9
MD03G1259100 Malus domestica HOM05D002297 ORTHO05D002385 5.0e-06 54.3 46 60.9
HanXRQChr17g0534671 Helianthus annuus HOM05D002297 ORTHO05D002385 8.5e-06 53.5 45 53.3


User provided reference genes

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