Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B01013 Eucalyptus grandis HOM05D004421 ORTHO05D005227 9.8e-49 196.4 96 100.0
Eucgr.B01010 Eucalyptus grandis HOM05D004421 ORTHO05D005227 1.8e-42 175.6 95 91.6
Hma1.2p1_0445F.1_g154450 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 2.3e-42 175.3 95 89.5
Cfa014325 Carpinus fangiana HOM05D004421 ORTHO05D005227 4.0e-42 174.5 95 89.5
LjContig00564g0020145 Lotus japonicus HOM05D004421 ORTHO05D005227 1.2e-41 172.9 95 90.5
LjContig00564g0024160 Lotus japonicus HOM05D004421 ORTHO05D005227 1.2e-41 172.9 95 90.5
Hma1.2p1_0177F.1_g077900 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 1.5e-41 172.6 95 88.4
Hma1.2p1_0177F.1_g077905 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 1.5e-41 172.6 95 88.4
ECA236G3405 Erigeron canadensis HOM05D004421 ORTHO05D005227 2.6e-41 171.8 95 88.4
LjContig00564g0000485 Lotus japonicus HOM05D004421 ORTHO05D005227 3.4e-41 171.4 95 89.5
LjContig00564g0024311 Lotus japonicus HOM05D004421 ORTHO05D005227 3.4e-41 171.4 95 89.5
QL10p065608 Quercus lobata HOM05D004421 ORTHO05D005227 3.4e-41 171.4 95 88.4
CSS0000360 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 5.7e-41 170.6 95 88.4
CSS0029217 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 5.7e-41 170.6 95 88.4
HanXRQChr04g0126911 Helianthus annuus HOM05D004421 ORTHO05D005227 5.7e-41 170.6 95 88.4
PGR042G0750 Punica granatum HOM05D004421 ORTHO05D005227 5.7e-41 170.6 95 87.4
Phvul.008G212200 Phaseolus vulgaris HOM05D004421 ORTHO05D005227 7.5e-41 170.2 95 88.4
QL08p031014 Quercus lobata HOM05D004421 ORTHO05D005227 7.5e-41 170.2 95 88.4
Haze_12777 Corylus avellana HOM05D004421 ORTHO05D005227 9.8e-41 169.9 95 87.4
Lsat_1_v5_gn_7_92700 Lactuca sativa HOM05D004421 ORTHO05D005227 9.8e-41 169.9 95 87.4
Psat4g220560 Pisum sativum HOM05D004421 ORTHO05D005227 9.8e-41 169.9 95 86.3
vmacro09354 Vaccinium macrocarpon HOM05D004421 ORTHO05D005227 9.8e-41 169.9 95 87.4
QL10p065434 Quercus lobata HOM05D004421 ORTHO05D005227 1.3e-40 169.5 95 87.4
CiPaw.08G089000 Carya illinoinensis HOM05D004421 ORTHO05D005227 1.7e-40 169.1 95 89.5
Glyma.14G047100 Glycine max HOM05D004421 ORTHO05D005227 1.7e-40 169.1 95 88.4
TAR629G1061 Trochodendron aralioides HOM05D004421 ORTHO05D005227 1.7e-40 169.1 95 89.5
Lalb_Chr10g0105671 Lupinus albus HOM05D004421 ORTHO05D005227 2.2e-40 168.7 95 87.4
VMungo0647G1664 Vigna mungo HOM05D004421 ORTHO05D005227 2.2e-40 168.7 95 88.4
GSVIVG01036899001 Vitis vinifera HOM05D004421 ORTHO05D005227 2.2e-40 168.7 95 87.4
CiPaw.03G156500 Carya illinoinensis HOM05D004421 ORTHO05D005227 3.7e-40 167.9 95 87.4
arahy.Tifrunner.gnm1.ann1.J4LN0V Arachis hypogaea HOM05D004421 ORTHO05D005227 6.3e-40 167.2 95 86.3
ECA234G2260 Erigeron canadensis HOM05D004421 ORTHO05D005227 6.3e-40 167.2 95 85.3
arahy.Tifrunner.gnm1.ann1.BKRM87 Arachis hypogaea HOM05D004421 ORTHO05D005227 8.3e-40 166.8 95 86.3
Medtr8g099150 Medicago truncatula HOM05D004421 ORTHO05D005227 8.3e-40 166.8 95 84.2
Rhsim04G0051300 Rhododendron simsii HOM05D004421 ORTHO05D005227 8.3e-40 166.8 95 87.4
CANSAT64G1364 Cannabis sativa HOM05D004421 ORTHO05D005227 1.4e-39 166.0 95 87.4
Ciclev10009985m.g Citrus clementina HOM05D004421 ORTHO05D005227 1.4e-39 166.0 95 86.3
DCAR_019262 Daucus carota HOM05D004421 ORTHO05D005227 2.4e-39 165.2 95 85.3
DCAR_012923 Daucus carota HOM05D004421 ORTHO05D005227 4.1e-39 164.5 95 85.3
Glyma.02G269800 Glycine max HOM05D004421 ORTHO05D005227 4.1e-39 164.5 95 86.3
Medtr8g016300 Medicago truncatula HOM05D004421 ORTHO05D005227 4.1e-39 164.5 95 83.2
TPR.G1800 Trifolium pratense HOM05D004421 ORTHO05D005227 5.4e-39 164.1 95 83.2
Ca_23316_v3 Cicer arietinum L. HOM05D004421 ORTHO05D005227 7.0e-39 163.7 95 82.1
TPR.G7933 Trifolium pratense HOM05D004421 ORTHO05D005227 7.0e-39 163.7 94 84.0
MSTRG.12990 Avicennia marina HOM05D004421 ORTHO05D005227 9.2e-39 163.3 95 85.3
MSTRG.14457 Avicennia marina HOM05D004421 ORTHO05D005227 9.2e-39 163.3 95 85.3
Cpa.g.sc12.255 Carica papaya HOM05D004421 ORTHO05D005227 9.2e-39 163.3 95 86.3
CAN.G149.31 Capsicum annuum HOM05D004421 ORTHO05D005227 1.2e-38 162.9 95 82.1
Manes.13G067100 Manihot esculenta HOM05D004421 ORTHO05D005227 1.2e-38 162.9 95 86.3
Prupe.3G211700 Prunus persica HOM05D004421 ORTHO05D005227 1.6e-38 162.5 95 86.3
Peaxi162Scf00047g00850 Petunia axillaris HOM05D004421 ORTHO05D005227 2.0e-38 162.2 95 81.1
CAN.G358.76 Capsicum annuum HOM05D004421 ORTHO05D005227 3.5e-38 161.4 95 81.1
Peaxi162Scf00149g00049 Petunia axillaris HOM05D004421 ORTHO05D005227 4.5e-38 161.0 95 81.1
Potri.002G225600 Populus trichocarpa HOM05D004421 ORTHO05D005227 4.5e-38 161.0 95 84.2
TWI36G1565 Tripterygium wilfordii HOM05D004421 ORTHO05D005227 5.9e-38 160.6 95 84.2
Aqoxy7G01112 Aquilegia oxysepala HOM05D004421 ORTHO05D005227 7.8e-38 160.2 95 82.1
FAN02G1632 Fragaria x ananassa HOM05D004421 ORTHO05D005227 7.8e-38 160.2 95 82.1
Thecc.07G030200 Theobroma cacao HOM05D004421 ORTHO05D005227 7.8e-38 160.2 95 83.2
FvH4_6g42460 Fragaria vesca HOM05D004421 ORTHO05D005227 1.0e-37 159.8 95 82.1
FAN05G5559 Fragaria x ananassa HOM05D004421 ORTHO05D005227 1.0e-37 159.8 95 82.1
FAN09G1846 Fragaria x ananassa HOM05D004421 ORTHO05D005227 1.0e-37 159.8 95 82.1
FAN14G1774 Fragaria x ananassa HOM05D004421 ORTHO05D005227 1.0e-37 159.8 95 82.1
Nitab4.5_0000138g0020 Nicotiana tabacum HOM05D004421 ORTHO05D005227 1.0e-37 159.8 95 81.1
RcHm_v2.0_Chr2g0158361 Rosa chinensis HOM05D004421 ORTHO05D005227 1.0e-37 159.8 95 82.1
Oeu013122.1 Olea europaea HOM05D004421 ORTHO05D005227 1.3e-37 159.5 95 82.1
Potri.014G157400 Populus trichocarpa HOM05D004421 ORTHO05D005227 1.3e-37 159.5 95 84.2
Aqoxy6G00590 Aquilegia oxysepala HOM05D004421 ORTHO05D005227 1.7e-37 159.1 95 81.1
Nitab4.5_0005588g0030 Nicotiana tabacum HOM05D004421 ORTHO05D005227 1.7e-37 159.1 95 81.1
ClCG02G009100 Citrullus lanatus HOM05D004421 ORTHO05D005227 2.3e-37 158.7 95 82.1
Duzib128G1691 Durio zibethinus HOM05D004421 ORTHO05D005227 2.3e-37 158.7 95 82.1
Sed0012667 Sechium edule HOM05D004421 ORTHO05D005227 2.3e-37 158.7 95 83.2
Gorai.005G241500 Gossypium raimondii HOM05D004421 ORTHO05D005227 3.9e-37 157.9 95 81.1
Sabra02G0172700 Salix brachista HOM05D004421 ORTHO05D005227 3.9e-37 157.9 95 83.2
Sopen02g017940 Solanum pennellii HOM05D004421 ORTHO05D005227 3.9e-37 157.9 95 78.9
PGSC0003DMG400010437 Solanum tuberosum HOM05D004421 ORTHO05D005227 3.9e-37 157.9 95 78.9
unitig_748.g8294 Utricularia gibba HOM05D004421 ORTHO05D005227 3.9e-37 157.9 95 82.1
TWI79G1637 Tripterygium wilfordii HOM05D004421 ORTHO05D005227 5.0e-37 157.5 95 83.2
CsaV3_2G034620 Cucumis sativus L. HOM05D004421 ORTHO05D005227 6.6e-37 157.1 95 82.1
Gohir.D02G213600 Gossypium hirsutum HOM05D004421 ORTHO05D005227 6.6e-37 157.1 95 81.1
Nitab4.5_0007533g0030 Nicotiana tabacum HOM05D004421 ORTHO05D005227 6.6e-37 157.1 95 80.0
Rhsim06G0166700 Rhododendron simsii HOM05D004421 ORTHO05D005227 8.6e-37 156.8 95 82.1
Solyc02g068770.4 Solanum lycopersicum HOM05D004421 ORTHO05D005227 8.6e-37 156.8 95 77.9
CAN.G358.77 Capsicum annuum HOM05D004421 ORTHO05D005227 1.1e-36 156.4 95 78.9
AUR62030497 Chenopodium quinoa HOM05D004421 ORTHO05D005227 1.1e-36 156.4 95 77.9
unitig_32.g10858 Utricularia gibba HOM05D004421 ORTHO05D005227 1.5e-36 156.0 95 82.1
Lsat_1_v5_gn_5_123820 Lactuca sativa HOM05D004421 ORTHO05D005227 1.9e-36 155.6 90 84.4
AUR62030797 Chenopodium quinoa HOM05D004421 ORTHO05D005227 2.5e-36 155.2 95 76.8
Gohir.A03G192600 Gossypium hirsutum HOM05D004421 ORTHO05D005227 2.5e-36 155.2 95 80.0
Nitab4.5_0001288g0200 Nicotiana tabacum HOM05D004421 ORTHO05D005227 3.3e-36 154.8 95 80.0
Sc12g0002130 Simmondsia chinensis HOM05D004421 ORTHO05D005227 3.3e-36 154.8 95 82.1
SalBow3G0779 Salvia bowleyana HOM05D004421 ORTHO05D005227 4.3e-36 154.5 95 78.9
CDE04G3645 Ceratophyllum demersum HOM05D004421 ORTHO05D005227 7.3e-36 153.7 95 76.8
Oeu054302.1 Olea europaea HOM05D004421 ORTHO05D005227 9.5e-36 153.3 95 78.9
PSO017G4413 Papaver somniferum HOM05D004421 ORTHO05D005227 9.5e-36 153.3 94 79.8
PSO675G5827 Papaver somniferum HOM05D004421 ORTHO05D005227 9.5e-36 153.3 94 79.8
CDE06G2669 Ceratophyllum demersum HOM05D004421 ORTHO05D005227 3.6e-35 151.4 95 75.8
SHI33915 Sapria himalayana HOM05D004421 ORTHO05D005227 4.7e-35 151.0 95 78.9
Atru.chr2.3508 Acer truncatum HOM05D004421 ORTHO05D005227 8.0e-35 150.2 95 76.8
EL10Ac5g12553 Beta vulgaris HOM05D004421 ORTHO05D005227 1.4e-34 149.4 95 76.8
ATR0665G259 Amborella trichopoda HOM05D004421 ORTHO05D005227 1.8e-34 149.1 95 76.8
SGA_v2.0_scaffold392G50685 Striga asiatica HOM05D004421 ORTHO05D005227 5.2e-34 147.5 95 75.8
Ah.12g058680 Amaranthus hybridus HOM05D004421 ORTHO05D005227 8.9e-34 146.7 95 76.8
Cc05_g14180 Coffea canephora HOM05D004421 ORTHO05D005227 1.2e-33 146.4 95 77.9
MELO3C019309.2 Cucumis melo HOM05D004421 ORTHO05D005227 1.2e-33 146.4 87 83.9
SGA_v2.0_scaffold159G37698 Striga asiatica HOM05D004421 ORTHO05D005227 2.6e-33 145.2 95 75.8
SGA_v2.0_scaffold363G49953 Striga asiatica HOM05D004421 ORTHO05D005227 9.8e-33 143.3 95 75.8
Hund24697 Selenicereus undatus HOM05D004421 ORTHO05D005227 2.2e-32 142.1 95 74.7
Cc05_g02530 Coffea canephora HOM05D004421 ORTHO05D005227 6.4e-32 140.6 95 73.7
COL.COLO4_09709 Corchorus olitorius HOM05D004421 ORTHO05D005227 6.4e-32 140.6 95 71.6
THA.LOC104811627 Tarenaya hassleriana HOM05D004421 ORTHO05D005227 8.3e-32 140.2 95 72.6
MBI16_g23852_MAGBIO Magnolia biondii HOM05D004421 ORTHO05D005227 1.9e-31 139.0 95 71.6
THA.LOC104813431 Tarenaya hassleriana HOM05D004421 ORTHO05D005227 4.1e-31 137.9 95 71.6
TPR.G40166 Trifolium pratense HOM05D004421 ORTHO05D005227 1.3e-29 132.9 79 81.0
BolC2t07739H Brassica oleracea HOM05D004421 ORTHO05D005227 3.0e-29 131.7 95 66.3
BcaB08g35879 Brassica carinata HOM05D004421 ORTHO05D005227 5.0e-29 131.0 95 66.3
BcaC04g20265 Brassica carinata HOM05D004421 ORTHO05D005227 5.0e-29 131.0 95 66.3
A02p09830 Brassica napus HOM05D004421 ORTHO05D005227 5.0e-29 131.0 95 66.3
BraA10t43337Z Brassica rapa HOM05D004421 ORTHO05D005227 5.0e-29 131.0 95 66.3
BcaB05g22185 Brassica carinata HOM05D004421 ORTHO05D005227 1.1e-28 129.8 95 65.3
C02p16370 Brassica napus HOM05D004421 ORTHO05D005227 1.1e-28 129.8 95 65.3
BraA02t06048Z Brassica rapa HOM05D004421 ORTHO05D005227 1.1e-28 129.8 95 65.3
CSS0048822 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 1.5e-28 129.4 95 74.7
vmacro12170 Vaccinium macrocarpon HOM05D004421 ORTHO05D005227 1.9e-28 129.0 80 81.2
CARHR268500 Cardamine hirsuta HOM05D004421 ORTHO05D005227 2.5e-28 128.6 95 63.2
Aa31LG3G11160 Aethionema arabicum HOM05D004421 ORTHO05D005227 3.3e-28 128.3 95 64.2
Eucgr.B01894 Eucalyptus grandis HOM05D004421 ORTHO05D005227 4.3e-28 127.9 65 95.4
Thhalv10015072m.g Eutrema salsugineum HOM05D004421 ORTHO05D005227 7.3e-28 127.1 95 65.3
Sp6g17090 Schrenkiella parvula HOM05D004421 ORTHO05D005227 9.5e-28 126.7 95 63.2
A05p12050 Brassica napus HOM05D004421 ORTHO05D005227 1.2e-27 126.3 96 65.6
A10p12420 Brassica napus HOM05D004421 ORTHO05D005227 1.2e-27 126.3 96 65.6
C09p45840 Brassica napus HOM05D004421 ORTHO05D005227 1.2e-27 126.3 96 65.6
BolC9t57441H Brassica oleracea HOM05D004421 ORTHO05D005227 1.2e-27 126.3 96 65.6
Carub.0008s1546 Capsella rubella HOM05D004421 ORTHO05D005227 2.1e-27 125.6 95 62.1
AL8G30670 Arabidopsis lyrata HOM05D004421 ORTHO05D005227 6.2e-27 124.0 95 62.1
AT5G55140 Arabidopsis thaliana HOM05D004421 ORTHO05D005227 6.2e-27 124.0 95 62.1
Lj2g0010759 Lotus japonicus HOM05D004421 ORTHO05D005227 4.0e-26 121.3 65 89.2
Zm00001eb211500 Zea mays HOM05D004421 ORTHO05D005227 8.9e-26 120.2 94 63.8
Dinv22240 Davidia involucrata HOM05D004421 ORTHO05D005227 1.5e-25 119.4 66 86.4
HPP92_026149 Vanilla planifolia HOM05D004421 ORTHO05D005227 2.6e-25 118.6 94 60.6
Os08g0110100 Oryza sativa ssp. japonica HOM05D004421 ORTHO05D005227 6.4e-24 114.0 94 60.6
BcaC03g14260 Brassica carinata HOM05D004421 ORTHO05D005227 2.7e-22 108.6 81 64.2
SEGI_06591 Sequoiadendron giganteum HOM05D004421 ORTHO05D005227 6.0e-22 107.5 94 55.3
BraA03t14310Z Brassica rapa HOM05D004421 ORTHO05D005227 3.9e-21 104.8 96 58.3
A08p21130 Brassica napus HOM05D004421 ORTHO05D005227 8.6e-21 103.6 96 58.3
FvH4_6g04610 Fragaria vesca HOM05D004421 ORTHO05D005227 8.6e-21 103.6 82 69.5
BcaC03g14258 Brassica carinata HOM05D004421 ORTHO05D005227 2.5e-20 102.1 79 62.0
Hma1.2p1_2381F.1_g321010 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 1.2e-19 99.8 85 64.7
Os06g0339800 Oryza sativa ssp. japonica HOM05D004421 ORTHO05D005227 1.8e-18 95.9 93 54.8
Potri.010G076275 Populus trichocarpa HOM05D004421 ORTHO05D005227 2.0e-17 92.4 79 62.0
Mapoly0058s0042 Marchantia polymorpha HOM05D004421 ORTHO05D005227 4.4e-17 91.3 82 58.5
AagrBONN_evm.TU.Sc2ySwM_344.5034 Anthoceros agrestis HOM05D004421 ORTHO05D005227 1.7e-16 89.4 82 56.1
Migut.H01800 Erythranthe guttata HOM05D004421 ORTHO05D005227 2.2e-16 89.0 56 75.0
HanXRQChr16g0506671 Helianthus annuus HOM05D004421 ORTHO05D005227 1.9e-15 85.9 45 91.1
GSVIVG01030492001 Vitis vinifera HOM05D004421 ORTHO05D005227 1.2e-14 83.2 45 91.1
Manes.12G070801 Manihot esculenta HOM05D004421 ORTHO05D005227 3.5e-14 81.6 45 86.7
MD09G1112900 Malus domestica HOM05D004421 ORTHO05D005227 1.0e-13 80.1 45 86.7
Pp3c26_2200 Physcomitrium patens HOM05D004421 ORTHO05D005227 2.3e-13 79.0 82 51.2
RcHm_v2.0_Chr4g0419171 Rosa chinensis HOM05D004421 ORTHO05D005227 8.9e-10 67.0 95 45.3
SMO172G0081 Selaginella moellendorffii HOM05D004421 ORTHO05D005227 8.4e-08 60.5 83 42.2
Nn2g15167 Nelumbo nucifera HOM05D004421 ORTHO05D005227 4.6e-06 54.7 32 84.4


User provided reference genes

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