Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B01010 Eucalyptus grandis HOM05D004421 ORTHO05D005227 1.2e-55 219.5 107 100.0
Hma1.2p1_0445F.1_g154450 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 5.8e-50 200.7 106 89.6
CiPaw.08G089000 Carya illinoinensis HOM05D004421 ORTHO05D005227 2.9e-49 198.4 102 95.1
vmacro09354 Vaccinium macrocarpon HOM05D004421 ORTHO05D005227 2.9e-49 198.4 106 89.6
Hma1.2p1_0177F.1_g077900 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 3.7e-49 198.0 106 88.7
Hma1.2p1_0177F.1_g077905 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 3.7e-49 198.0 106 88.7
Cfa014325 Carpinus fangiana HOM05D004421 ORTHO05D005227 6.4e-49 197.2 101 93.1
CiPaw.03G156500 Carya illinoinensis HOM05D004421 ORTHO05D005227 1.4e-48 196.1 102 93.1
CSS0000360 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 1.9e-48 195.7 101 93.1
HanXRQChr04g0126911 Helianthus annuus HOM05D004421 ORTHO05D005227 1.9e-48 195.7 102 91.2
QL10p065608 Quercus lobata HOM05D004421 ORTHO05D005227 1.9e-48 195.7 101 93.1
Rhsim04G0051300 Rhododendron simsii HOM05D004421 ORTHO05D005227 1.9e-48 195.7 106 89.6
Lsat_1_v5_gn_7_92700 Lactuca sativa HOM05D004421 ORTHO05D005227 3.2e-48 194.9 106 86.8
CSS0029217 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 4.1e-48 194.5 101 92.1
QL08p031014 Quercus lobata HOM05D004421 ORTHO05D005227 4.1e-48 194.5 101 93.1
QL10p065434 Quercus lobata HOM05D004421 ORTHO05D005227 7.1e-48 193.7 101 92.1
Haze_12777 Corylus avellana HOM05D004421 ORTHO05D005227 1.6e-47 192.6 101 91.1
TAR629G1061 Trochodendron aralioides HOM05D004421 ORTHO05D005227 1.6e-47 192.6 102 91.2
LjContig00564g0020145 Lotus japonicus HOM05D004421 ORTHO05D005227 2.1e-47 192.2 101 92.1
LjContig00564g0024160 Lotus japonicus HOM05D004421 ORTHO05D005227 2.1e-47 192.2 101 92.1
LjContig00564g0000485 Lotus japonicus HOM05D004421 ORTHO05D005227 6.0e-47 190.7 101 91.1
LjContig00564g0024311 Lotus japonicus HOM05D004421 ORTHO05D005227 6.0e-47 190.7 101 91.1
CANSAT64G1364 Cannabis sativa HOM05D004421 ORTHO05D005227 7.8e-47 190.3 100 93.0
Phvul.008G212200 Phaseolus vulgaris HOM05D004421 ORTHO05D005227 7.8e-47 190.3 100 92.0
ECA236G3405 Erigeron canadensis HOM05D004421 ORTHO05D005227 1.3e-46 189.5 103 88.3
Lalb_Chr10g0105671 Lupinus albus HOM05D004421 ORTHO05D005227 1.3e-46 189.5 100 91.0
Psat4g220560 Pisum sativum HOM05D004421 ORTHO05D005227 1.3e-46 189.5 102 88.2
Glyma.14G047100 Glycine max HOM05D004421 ORTHO05D005227 1.7e-46 189.1 100 92.0
PGR042G0750 Punica granatum HOM05D004421 ORTHO05D005227 1.7e-46 189.1 101 90.1
arahy.Tifrunner.gnm1.ann1.J4LN0V Arachis hypogaea HOM05D004421 ORTHO05D005227 2.3e-46 188.7 101 90.1
DCAR_019262 Daucus carota HOM05D004421 ORTHO05D005227 2.3e-46 188.7 102 87.3
VMungo0647G1664 Vigna mungo HOM05D004421 ORTHO05D005227 2.3e-46 188.7 100 92.0
arahy.Tifrunner.gnm1.ann1.BKRM87 Arachis hypogaea HOM05D004421 ORTHO05D005227 3.0e-46 188.3 101 90.1
ECA234G2260 Erigeron canadensis HOM05D004421 ORTHO05D005227 3.0e-46 188.3 99 89.9
Cpa.g.sc12.255 Carica papaya HOM05D004421 ORTHO05D005227 3.9e-46 188.0 106 86.8
Potri.002G225600 Populus trichocarpa HOM05D004421 ORTHO05D005227 5.1e-46 187.6 107 86.9
GSVIVG01036899001 Vitis vinifera HOM05D004421 ORTHO05D005227 5.1e-46 187.6 103 89.3
Ciclev10009985m.g Citrus clementina HOM05D004421 ORTHO05D005227 6.6e-46 187.2 106 85.8
Prupe.3G211700 Prunus persica HOM05D004421 ORTHO05D005227 6.6e-46 187.2 101 91.1
Peaxi162Scf00149g00049 Petunia axillaris HOM05D004421 ORTHO05D005227 8.6e-46 186.8 106 83.0
CsaV3_2G034620 Cucumis sativus L. HOM05D004421 ORTHO05D005227 1.1e-45 186.4 106 84.9
DCAR_012923 Daucus carota HOM05D004421 ORTHO05D005227 1.5e-45 186.0 100 88.0
Sabra02G0172700 Salix brachista HOM05D004421 ORTHO05D005227 1.5e-45 186.0 107 86.9
CAN.G149.31 Capsicum annuum HOM05D004421 ORTHO05D005227 1.9e-45 185.7 106 83.0
CAN.G358.76 Capsicum annuum HOM05D004421 ORTHO05D005227 1.9e-45 185.7 106 83.0
Ca_23316_v3 Cicer arietinum L. HOM05D004421 ORTHO05D005227 1.9e-45 185.7 100 87.0
TWI36G1565 Tripterygium wilfordii HOM05D004421 ORTHO05D005227 1.9e-45 185.7 102 88.2
ClCG02G009100 Citrullus lanatus HOM05D004421 ORTHO05D005227 2.5e-45 185.3 102 86.3
Sed0012667 Sechium edule HOM05D004421 ORTHO05D005227 2.5e-45 185.3 107 85.0
MSTRG.14457 Avicennia marina HOM05D004421 ORTHO05D005227 4.3e-45 184.5 106 84.0
FAN02G1632 Fragaria x ananassa HOM05D004421 ORTHO05D005227 4.3e-45 184.5 101 87.1
Glyma.02G269800 Glycine max HOM05D004421 ORTHO05D005227 4.3e-45 184.5 100 90.0
Manes.13G067100 Manihot esculenta HOM05D004421 ORTHO05D005227 4.3e-45 184.5 101 90.1
Rhsim06G0166700 Rhododendron simsii HOM05D004421 ORTHO05D005227 4.3e-45 184.5 102 86.3
FvH4_6g42460 Fragaria vesca HOM05D004421 ORTHO05D005227 5.6e-45 184.1 101 87.1
FAN05G5559 Fragaria x ananassa HOM05D004421 ORTHO05D005227 5.6e-45 184.1 101 87.1
FAN09G1846 Fragaria x ananassa HOM05D004421 ORTHO05D005227 5.6e-45 184.1 101 87.1
FAN14G1774 Fragaria x ananassa HOM05D004421 ORTHO05D005227 5.6e-45 184.1 101 87.1
Peaxi162Scf00047g00850 Petunia axillaris HOM05D004421 ORTHO05D005227 5.6e-45 184.1 106 81.1
RcHm_v2.0_Chr2g0158361 Rosa chinensis HOM05D004421 ORTHO05D005227 5.6e-45 184.1 101 87.1
Thecc.07G030200 Theobroma cacao HOM05D004421 ORTHO05D005227 5.6e-45 184.1 101 88.1
Medtr8g099150 Medicago truncatula HOM05D004421 ORTHO05D005227 7.3e-45 183.7 101 86.1
PGSC0003DMG400010437 Solanum tuberosum HOM05D004421 ORTHO05D005227 7.3e-45 183.7 106 81.1
Nitab4.5_0005588g0030 Nicotiana tabacum HOM05D004421 ORTHO05D005227 1.6e-44 182.6 106 81.1
TPR.G1800 Trifolium pratense HOM05D004421 ORTHO05D005227 1.6e-44 182.6 101 86.1
TWI79G1637 Tripterygium wilfordii HOM05D004421 ORTHO05D005227 1.6e-44 182.6 102 87.3
Oeu013122.1 Olea europaea HOM05D004421 ORTHO05D005227 2.1e-44 182.2 109 81.7
Potri.014G157400 Populus trichocarpa HOM05D004421 ORTHO05D005227 2.1e-44 182.2 101 88.1
Aqoxy7G01112 Aquilegia oxysepala HOM05D004421 ORTHO05D005227 3.6e-44 181.4 102 84.3
Medtr8g016300 Medicago truncatula HOM05D004421 ORTHO05D005227 3.6e-44 181.4 101 85.1
MSTRG.12990 Avicennia marina HOM05D004421 ORTHO05D005227 4.7e-44 181.0 102 86.3
Nitab4.5_0007533g0030 Nicotiana tabacum HOM05D004421 ORTHO05D005227 4.7e-44 181.0 106 81.1
CAN.G358.77 Capsicum annuum HOM05D004421 ORTHO05D005227 6.2e-44 180.6 106 81.1
Lsat_1_v5_gn_5_123820 Lactuca sativa HOM05D004421 ORTHO05D005227 6.2e-44 180.6 97 87.6
Sopen02g017940 Solanum pennellii HOM05D004421 ORTHO05D005227 6.2e-44 180.6 102 82.4
TPR.G7933 Trifolium pratense HOM05D004421 ORTHO05D005227 8.1e-44 180.3 101 84.2
Aqoxy6G00590 Aquilegia oxysepala HOM05D004421 ORTHO05D005227 1.4e-43 179.5 106 81.1
Nitab4.5_0000138g0020 Nicotiana tabacum HOM05D004421 ORTHO05D005227 1.4e-43 179.5 100 84.0
Solyc02g068770.4 Solanum lycopersicum HOM05D004421 ORTHO05D005227 1.4e-43 179.5 102 81.4
Nitab4.5_0001288g0200 Nicotiana tabacum HOM05D004421 ORTHO05D005227 2.4e-43 178.7 106 81.1
AUR62030497 Chenopodium quinoa HOM05D004421 ORTHO05D005227 6.8e-43 177.2 100 82.0
Duzib128G1691 Durio zibethinus HOM05D004421 ORTHO05D005227 6.8e-43 177.2 101 86.1
Gorai.005G241500 Gossypium raimondii HOM05D004421 ORTHO05D005227 8.9e-43 176.8 101 84.2
Sc12g0002130 Simmondsia chinensis HOM05D004421 ORTHO05D005227 1.2e-42 176.4 101 86.1
AUR62030797 Chenopodium quinoa HOM05D004421 ORTHO05D005227 1.5e-42 176.0 100 81.0
PSO017G4413 Papaver somniferum HOM05D004421 ORTHO05D005227 1.5e-42 176.0 109 79.8
PSO675G5827 Papaver somniferum HOM05D004421 ORTHO05D005227 1.5e-42 176.0 109 79.8
SalBow3G0779 Salvia bowleyana HOM05D004421 ORTHO05D005227 1.5e-42 176.0 101 82.2
unitig_748.g8294 Utricularia gibba HOM05D004421 ORTHO05D005227 2.0e-42 175.6 98 85.7
Eucgr.B01013 Eucalyptus grandis HOM05D004421 ORTHO05D005227 2.6e-42 175.3 95 91.6
MELO3C019309.2 Cucumis melo HOM05D004421 ORTHO05D005227 4.4e-42 174.5 98 85.7
Gohir.A03G192600 Gossypium hirsutum HOM05D004421 ORTHO05D005227 5.8e-42 174.1 101 83.2
Oeu054302.1 Olea europaea HOM05D004421 ORTHO05D005227 5.8e-42 174.1 102 80.4
Atru.chr2.3508 Acer truncatum HOM05D004421 ORTHO05D005227 7.6e-42 173.7 106 77.4
unitig_32.g10858 Utricularia gibba HOM05D004421 ORTHO05D005227 7.6e-42 173.7 98 85.7
EL10Ac5g12553 Beta vulgaris HOM05D004421 ORTHO05D005227 1.3e-41 172.9 101 81.2
SHI33915 Sapria himalayana HOM05D004421 ORTHO05D005227 2.2e-41 172.2 107 81.3
Gohir.D02G213600 Gossypium hirsutum HOM05D004421 ORTHO05D005227 4.9e-41 171.0 101 82.2
SGA_v2.0_scaffold392G50685 Striga asiatica HOM05D004421 ORTHO05D005227 8.4e-41 170.2 109 77.1
CDE04G3645 Ceratophyllum demersum HOM05D004421 ORTHO05D005227 1.4e-40 169.5 98 79.6
Ah.12g058680 Amaranthus hybridus HOM05D004421 ORTHO05D005227 2.4e-40 168.7 106 77.4
Cc05_g14180 Coffea canephora HOM05D004421 ORTHO05D005227 3.2e-40 168.3 106 79.2
CDE06G2669 Ceratophyllum demersum HOM05D004421 ORTHO05D005227 5.4e-40 167.5 98 78.6
ATR0665G259 Amborella trichopoda HOM05D004421 ORTHO05D005227 7.1e-40 167.2 98 80.6
Cc05_g02530 Coffea canephora HOM05D004421 ORTHO05D005227 2.1e-39 165.6 106 76.4
SGA_v2.0_scaffold159G37698 Striga asiatica HOM05D004421 ORTHO05D005227 3.0e-38 161.8 98 78.6
SGA_v2.0_scaffold363G49953 Striga asiatica HOM05D004421 ORTHO05D005227 3.0e-38 161.8 109 75.2
MBI16_g23852_MAGBIO Magnolia biondii HOM05D004421 ORTHO05D005227 8.6e-38 160.2 110 71.8
Hund24697 Selenicereus undatus HOM05D004421 ORTHO05D005227 1.5e-37 159.5 101 78.2
THA.LOC104811627 Tarenaya hassleriana HOM05D004421 ORTHO05D005227 1.9e-37 159.1 106 71.7
CSS0048822 Camellia sinensis var. sinensis HOM05D004421 ORTHO05D005227 8.1e-36 153.7 101 78.2
COL.COLO4_09709 Corchorus olitorius HOM05D004421 ORTHO05D005227 8.1e-36 153.7 100 73.0
THA.LOC104813431 Tarenaya hassleriana HOM05D004421 ORTHO05D005227 2.4e-35 152.1 98 73.5
A02p09830 Brassica napus HOM05D004421 ORTHO05D005227 4.0e-35 151.4 106 67.0
BraA02t06048Z Brassica rapa HOM05D004421 ORTHO05D005227 9.0e-35 150.2 106 66.0
BcaC04g20265 Brassica carinata HOM05D004421 ORTHO05D005227 2.0e-34 149.1 107 66.4
BraA10t43337Z Brassica rapa HOM05D004421 ORTHO05D005227 2.0e-34 149.1 107 66.4
BcaB08g35879 Brassica carinata HOM05D004421 ORTHO05D005227 4.4e-34 147.9 102 68.6
C02p16370 Brassica napus HOM05D004421 ORTHO05D005227 4.4e-34 147.9 107 65.4
BolC2t07739H Brassica oleracea HOM05D004421 ORTHO05D005227 4.4e-34 147.9 107 65.4
BcaB05g22185 Brassica carinata HOM05D004421 ORTHO05D005227 1.3e-33 146.4 98 68.4
Aa31LG3G11160 Aethionema arabicum HOM05D004421 ORTHO05D005227 3.8e-33 144.8 98 67.3
Thhalv10015072m.g Eutrema salsugineum HOM05D004421 ORTHO05D005227 3.8e-33 144.8 106 65.1
TPR.G40166 Trifolium pratense HOM05D004421 ORTHO05D005227 3.8e-33 144.8 85 82.4
A05p12050 Brassica napus HOM05D004421 ORTHO05D005227 4.9e-33 144.4 108 65.7
A10p12420 Brassica napus HOM05D004421 ORTHO05D005227 4.9e-33 144.4 108 65.7
C09p45840 Brassica napus HOM05D004421 ORTHO05D005227 4.9e-33 144.4 108 65.7
BolC9t57441H Brassica oleracea HOM05D004421 ORTHO05D005227 4.9e-33 144.4 108 65.7
Carub.0008s1546 Capsella rubella HOM05D004421 ORTHO05D005227 4.9e-33 144.4 106 64.2
AL8G30670 Arabidopsis lyrata HOM05D004421 ORTHO05D005227 8.4e-33 143.7 107 64.5
AT5G55140 Arabidopsis thaliana HOM05D004421 ORTHO05D005227 1.1e-32 143.3 107 63.6
Sp6g17090 Schrenkiella parvula HOM05D004421 ORTHO05D005227 1.1e-32 143.3 98 66.3
CARHR268500 Cardamine hirsuta HOM05D004421 ORTHO05D005227 9.3e-32 140.2 107 62.6
Zm00001eb211500 Zea mays HOM05D004421 ORTHO05D005227 1.2e-31 139.8 99 67.7
Lj2g0010759 Lotus japonicus HOM05D004421 ORTHO05D005227 2.7e-31 138.7 101 72.3
HPP92_026149 Vanilla planifolia HOM05D004421 ORTHO05D005227 6.0e-31 137.5 99 63.6
vmacro12170 Vaccinium macrocarpon HOM05D004421 ORTHO05D005227 5.1e-30 134.4 86 81.4
Os08g0110100 Oryza sativa ssp. japonica HOM05D004421 ORTHO05D005227 8.7e-30 133.7 99 64.6
Dinv22240 Davidia involucrata HOM05D004421 ORTHO05D005227 5.6e-29 131.0 66 92.4
SEGI_06591 Sequoiadendron giganteum HOM05D004421 ORTHO05D005227 5.3e-27 124.4 98 58.2
Eucgr.B01894 Eucalyptus grandis HOM05D004421 ORTHO05D005227 9.0e-27 123.6 65 89.2
BcaC03g14260 Brassica carinata HOM05D004421 ORTHO05D005227 3.8e-25 118.2 81 67.9
Hma1.2p1_2381F.1_g321010 Hydrangea macrophylla HOM05D004421 ORTHO05D005227 4.9e-25 117.9 90 64.4
BraA03t14310Z Brassica rapa HOM05D004421 ORTHO05D005227 4.2e-24 114.8 96 61.5
FvH4_6g04610 Fragaria vesca HOM05D004421 ORTHO05D005227 4.2e-24 114.8 75 78.7
A08p21130 Brassica napus HOM05D004421 ORTHO05D005227 9.3e-24 113.6 96 61.5
BcaC03g14258 Brassica carinata HOM05D004421 ORTHO05D005227 4.6e-23 111.3 91 60.4
Mapoly0058s0042 Marchantia polymorpha HOM05D004421 ORTHO05D005227 1.3e-22 109.8 94 58.5
AagrBONN_evm.TU.Sc2ySwM_344.5034 Anthoceros agrestis HOM05D004421 ORTHO05D005227 8.7e-22 107.1 88 59.1
Os06g0339800 Oryza sativa ssp. japonica HOM05D004421 ORTHO05D005227 1.1e-21 106.7 97 56.7
Migut.H01800 Erythranthe guttata HOM05D004421 ORTHO05D005227 8.1e-20 100.5 56 82.1
Potri.010G076275 Populus trichocarpa HOM05D004421 ORTHO05D005227 4.0e-19 98.2 79 64.6
Pp3c26_2200 Physcomitrium patens HOM05D004421 ORTHO05D005227 2.6e-18 95.5 87 55.2
HanXRQChr16g0506671 Helianthus annuus HOM05D004421 ORTHO05D005227 5.8e-18 94.4 52 86.5
Manes.12G070801 Manihot esculenta HOM05D004421 ORTHO05D005227 1.7e-17 92.8 56 78.6
MD09G1112900 Malus domestica HOM05D004421 ORTHO05D005227 6.4e-17 90.9 51 86.3
GSVIVG01030492001 Vitis vinifera HOM05D004421 ORTHO05D005227 1.1e-16 90.1 53 86.8
RcHm_v2.0_Chr4g0419171 Rosa chinensis HOM05D004421 ORTHO05D005227 1.0e-14 83.6 101 48.5
SMO172G0081 Selaginella moellendorffii HOM05D004421 ORTHO05D005227 8.2e-12 73.9 86 45.3
Nn2g15167 Nelumbo nucifera HOM05D004421 ORTHO05D005227 5.8e-10 67.8 39 82.1
Cre05.g234659 Chlamydomonas reinhardtii HOM05D004421 ORTHO05D005227 2.1e-07 59.3 83 42.2


User provided reference genes

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