Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B00901 Eucalyptus grandis HOM05D006133 ORTHO05D007855 1.7e-78 296.2 184 100.0
Eucgr.B00955 Eucalyptus grandis HOM05D006133 ORTHO05D007855 9.5e-77 290.4 184 97.8
Eucgr.B00904 Eucalyptus grandis HOM05D006133 ORTHO05D007855 2.2e-41 172.9 174 65.5
Eucgr.B00952 Eucalyptus grandis HOM05D006133 ORTHO05D007855 1.1e-29 134.0 87 80.5
Manes.16G026900 Manihot esculenta HOM05D006133 ORTHO05D007855 2.2e-20 103.2 166 42.2
Thecc.06G188500 Theobroma cacao HOM05D006133 ORTHO05D007855 2.4e-19 99.8 167 38.9
QL05p040164 Quercus lobata HOM05D006133 ORTHO05D007855 6.9e-19 98.2 167 38.9
Cpa.g.sc27.45 Carica papaya HOM05D006133 ORTHO05D007855 1.5e-18 97.1 167 40.1
COL.COLO4_31481 Corchorus olitorius HOM05D006133 ORTHO05D007855 2.6e-18 96.3 105 52.4
Gorai.011G027600 Gossypium raimondii HOM05D006133 ORTHO05D007855 1.0e-17 94.4 167 37.7
Lj1A1206T67 Lonicera japonica HOM05D006133 ORTHO05D007855 1.0e-17 94.4 167 41.3
Atru.chr10.1894 Acer truncatum HOM05D006133 ORTHO05D007855 1.7e-17 93.6 166 38.0
Dinv40551 Davidia involucrata HOM05D006133 ORTHO05D007855 1.7e-17 93.6 177 39.5
arahy.Tifrunner.gnm1.ann1.YAJ938 Arachis hypogaea HOM05D006133 ORTHO05D007855 2.9e-17 92.8 105 52.4
Cfa000437 Carpinus fangiana HOM05D006133 ORTHO05D007855 6.5e-17 91.7 167 37.7
Haze_06477 Corylus avellana HOM05D006133 ORTHO05D007855 6.5e-17 91.7 167 37.7
Glyma.13G179800 Glycine max HOM05D006133 ORTHO05D007855 6.5e-17 91.7 167 38.9
Oeu057904.1 Olea europaea HOM05D006133 ORTHO05D007855 6.5e-17 91.7 178 44.4
CSS0047692 Camellia sinensis var. sinensis HOM05D006133 ORTHO05D007855 8.5e-17 91.3 177 37.9
ClCG03G006010 Citrullus lanatus HOM05D006133 ORTHO05D007855 8.5e-17 91.3 167 37.7
Gohir.A10G025600 Gossypium hirsutum HOM05D006133 ORTHO05D007855 8.5e-17 91.3 167 36.5
Ciclev10017918m.g Citrus clementina HOM05D006133 ORTHO05D007855 1.1e-16 90.9 105 48.6
MELO3C002599.2 Cucumis melo HOM05D006133 ORTHO05D007855 1.4e-16 90.5 167 37.7
CsaV3_1G012270 Cucumis sativus L. HOM05D006133 ORTHO05D007855 1.4e-16 90.5 167 37.7
Duzib235G0895 Durio zibethinus HOM05D006133 ORTHO05D007855 1.4e-16 90.5 105 47.6
Phvul.002G234200 Phaseolus vulgaris HOM05D006133 ORTHO05D007855 2.5e-16 89.7 167 37.7
Hma1.2p1_0785F.1_g217580 Hydrangea macrophylla HOM05D006133 ORTHO05D007855 3.2e-16 89.4 105 49.5
AUR62017011 Chenopodium quinoa HOM05D006133 ORTHO05D007855 5.5e-16 88.6 105 50.5
ECA234G2723 Erigeron canadensis HOM05D006133 ORTHO05D007855 7.2e-16 88.2 180 36.1
Actinidia05630 Actinidia chinensis HOM05D006133 ORTHO05D007855 1.2e-15 87.4 167 36.5
Lj4g0021405 Lotus japonicus HOM05D006133 ORTHO05D007855 1.2e-15 87.4 167 37.7
Prupe.4G046300 Prunus persica HOM05D006133 ORTHO05D007855 1.2e-15 87.4 105 49.5
RcHm_v2.0_Chr5g0008281 Rosa chinensis HOM05D006133 ORTHO05D007855 1.2e-15 87.4 174 36.2
EL10Ac8g20377 Beta vulgaris HOM05D006133 ORTHO05D007855 1.6e-15 87.0 108 48.1
FvH4_3g09320 Fragaria vesca HOM05D006133 ORTHO05D007855 1.6e-15 87.0 166 38.0
CiPaw.09G059200 Carya illinoinensis HOM05D006133 ORTHO05D007855 2.1e-15 86.7 167 35.9
PSO478G1675 Papaver somniferum HOM05D006133 ORTHO05D007855 2.1e-15 86.7 108 45.4
PSO478G5317 Papaver somniferum HOM05D006133 ORTHO05D007855 2.1e-15 86.7 108 45.4
FAN21G1061 Fragaria x ananassa HOM05D006133 ORTHO05D007855 2.7e-15 86.3 105 48.6
MBI09_g12165_MAGBIO Magnolia biondii HOM05D006133 ORTHO05D007855 2.7e-15 86.3 167 36.5
Glyma.07G196100 Glycine max HOM05D006133 ORTHO05D007855 4.7e-15 85.5 167 36.5
Potri.004G042800 Populus trichocarpa HOM05D006133 ORTHO05D007855 4.7e-15 85.5 160 37.5
Hund23730 Selenicereus undatus HOM05D006133 ORTHO05D007855 4.7e-15 85.5 105 48.6
Hund23731 Selenicereus undatus HOM05D006133 ORTHO05D007855 4.7e-15 85.5 105 48.6
VMungo0251G0712 Vigna mungo HOM05D006133 ORTHO05D007855 4.7e-15 85.5 167 35.9
THA.LOC104814218 Tarenaya hassleriana HOM05D006133 ORTHO05D007855 6.1e-15 85.1 105 47.6
Migut.M01145 Erythranthe guttata HOM05D006133 ORTHO05D007855 7.9e-15 84.7 167 34.1
FAN11G1298 Fragaria x ananassa HOM05D006133 ORTHO05D007855 7.9e-15 84.7 105 47.6
Medtr4g088855 Medicago truncatula HOM05D006133 ORTHO05D007855 7.9e-15 84.7 167 37.1
AUR62014816 Chenopodium quinoa HOM05D006133 ORTHO05D007855 1.0e-14 84.3 105 48.6
FAN25G2154 Fragaria x ananassa HOM05D006133 ORTHO05D007855 1.0e-14 84.3 105 47.6
TPR.G12027 Trifolium pratense HOM05D006133 ORTHO05D007855 1.0e-14 84.3 167 36.5
AT2G33793 Arabidopsis thaliana HOM05D006133 ORTHO05D007855 1.8e-14 83.6 105 46.7
Carub.0004s1546 Capsella rubella HOM05D006133 ORTHO05D007855 1.8e-14 83.6 105 46.7
Ah.09g237330 Amaranthus hybridus HOM05D006133 ORTHO05D007855 3.0e-14 82.8 105 46.7
Cc02_g13300 Coffea canephora HOM05D006133 ORTHO05D007855 3.0e-14 82.8 167 33.5
Peaxi162Scf00736g00427 Petunia axillaris HOM05D006133 ORTHO05D007855 3.0e-14 82.8 174 35.1
ATR0584G083 Amborella trichopoda HOM05D006133 ORTHO05D007855 3.9e-14 82.4 105 47.6
Cc01_g03530 Coffea canephora HOM05D006133 ORTHO05D007855 3.9e-14 82.4 105 43.8
BcaC02g07769 Brassica carinata HOM05D006133 ORTHO05D007855 5.1e-14 82.0 105 46.7
Thhalv10017234m.g Eutrema salsugineum HOM05D006133 ORTHO05D007855 6.7e-14 81.6 105 45.7
BolC4t27810H Brassica oleracea HOM05D006133 ORTHO05D007855 1.1e-13 80.9 105 45.7
Sc05g0007700 Simmondsia chinensis HOM05D006133 ORTHO05D007855 1.5e-13 80.5 99 49.5
Ca_18541_v3 Cicer arietinum L. HOM05D006133 ORTHO05D007855 2.0e-13 80.1 105 46.7
FAN16G1924 Fragaria x ananassa HOM05D006133 ORTHO05D007855 3.3e-13 79.3 98 48.0
Sopen02g023140 Solanum pennellii HOM05D006133 ORTHO05D007855 3.3e-13 79.3 133 39.8
TAR628G0719 Trochodendron aralioides HOM05D006133 ORTHO05D007855 3.3e-13 79.3 167 33.5
CDE04G1633 Ceratophyllum demersum HOM05D006133 ORTHO05D007855 4.4e-13 79.0 108 41.7
unitig_22.g6229 Utricularia gibba HOM05D006133 ORTHO05D007855 7.4e-13 78.2 105 43.8
A04p26010 Brassica napus HOM05D006133 ORTHO05D007855 1.3e-12 77.4 105 44.8
C04p63360 Brassica napus HOM05D006133 ORTHO05D007855 1.3e-12 77.4 92 48.9
CARHR127900 Cardamine hirsuta HOM05D006133 ORTHO05D007855 1.3e-12 77.4 105 44.8
arahy.Tifrunner.gnm1.ann1.Y5A5WX Arachis hypogaea HOM05D006133 ORTHO05D007855 2.2e-12 76.6 167 34.7
CAN.G1164.26 Capsicum annuum HOM05D006133 ORTHO05D007855 2.2e-12 76.6 133 39.1
Solyc02g078280.3 Solanum lycopersicum HOM05D006133 ORTHO05D007855 2.8e-12 76.3 70 58.6
BraA04t18104Z Brassica rapa HOM05D006133 ORTHO05D007855 8.2e-12 74.7 92 47.8
PGSC0003DMG400029689 Solanum tuberosum HOM05D006133 ORTHO05D007855 8.2e-12 74.7 130 38.5
CSS0042278 Camellia sinensis var. sinensis HOM05D006133 ORTHO05D007855 2.4e-11 73.2 167 33.5
Zm00001eb063880 Zea mays HOM05D006133 ORTHO05D007855 4.1e-11 72.4 108 36.1
AL4G29540 Arabidopsis lyrata HOM05D006133 ORTHO05D007855 5.3e-11 72.0 105 41.9
Os03g0837800 Oryza sativa ssp. japonica HOM05D006133 ORTHO05D007855 5.3e-11 72.0 96 40.6
Gohir.D10G026300 Gossypium hirsutum HOM05D006133 ORTHO05D007855 2.0e-10 70.1 128 34.4
BcaC02g11457 Brassica carinata HOM05D006133 ORTHO05D007855 3.5e-10 69.3 105 41.0
C04p15330 Brassica napus HOM05D006133 ORTHO05D007855 3.5e-10 69.3 105 41.0
BolC4t23106H Brassica oleracea HOM05D006133 ORTHO05D007855 5.9e-10 68.6 98 41.8
Dinv07556 Davidia involucrata HOM05D006133 ORTHO05D007855 7.7e-10 68.2 137 35.8
Solyc02g078290.4 Solanum lycopersicum HOM05D006133 ORTHO05D007855 2.2e-09 66.6 141 35.5
Rhsim13G0177600 Rhododendron simsii HOM05D006133 ORTHO05D007855 2.9e-09 66.2 216 39.4
MD05G1313300 Malus domestica HOM05D006133 ORTHO05D007855 2.5e-08 63.2 66 51.5
AagrBONN_evm.TU.Sc2ySwM_228.202 Anthoceros agrestis HOM05D006133 ORTHO05D007855 3.2e-08 62.8 99 34.3
Lsat_1_v5_gn_4_52940 Lactuca sativa HOM05D006133 ORTHO05D007855 3.2e-08 62.8 105 40.0
Psat7g113640 Pisum sativum HOM05D006133 ORTHO05D007855 3.2e-08 62.8 68 52.9
SMO353G0258 Selaginella moellendorffii HOM05D006133 ORTHO05D007855 3.2e-08 62.8 99 36.4
Sed0025328 Sechium edule HOM05D006133 ORTHO05D007855 7.2e-08 61.6 137 32.8
BcaB02g10593 Brassica carinata HOM05D006133 ORTHO05D007855 1.6e-07 60.5 92 40.2
AL4G11580 Arabidopsis lyrata HOM05D006133 ORTHO05D007855 2.1e-07 60.1 82 43.9
HanXRQChr16g0517711 Helianthus annuus HOM05D006133 ORTHO05D007855 3.6e-07 59.3 105 38.1
Cc01_g03500 Coffea canephora HOM05D006133 ORTHO05D007855 2.3e-06 56.6 63 50.8
DCAR_028075 Daucus carota HOM05D006133 ORTHO05D007855 3.0e-06 56.2 116 36.2


User provided reference genes

Program Settings