Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B00881 Eucalyptus grandis HOM05D003422 ORTHO05D004263 1.2e-43 179.5 90 100.0
Eucgr.B00992 Eucalyptus grandis HOM05D003422 ORTHO05D004263 8.6e-31 136.7 71 95.8
Eucgr.K00985 Eucalyptus grandis HOM05D003422 ORTHO05D004263 8.6e-31 136.7 71 95.8
Rhsim02G0001300 Rhododendron simsii HOM05D003422 ORTHO05D004263 1.1e-30 136.3 70 95.7
Actinidia15098 Actinidia chinensis HOM05D003422 ORTHO05D004263 7.3e-30 133.7 71 93.0
Actinidia27808 Actinidia chinensis HOM05D003422 ORTHO05D004263 7.3e-30 133.7 68 95.6
CANSAT64G0467 Cannabis sativa HOM05D003422 ORTHO05D004263 7.3e-30 133.7 71 93.0
Cfa009213 Carpinus fangiana HOM05D003422 ORTHO05D004263 7.3e-30 133.7 71 93.0
Cfa012129 Carpinus fangiana HOM05D003422 ORTHO05D004263 7.3e-30 133.7 71 93.0
Haze_08919 Corylus avellana HOM05D003422 ORTHO05D004263 7.3e-30 133.7 71 93.0
Haze_12250 Corylus avellana HOM05D003422 ORTHO05D004263 7.3e-30 133.7 71 93.0
MD03G1198200 Malus domestica HOM05D003422 ORTHO05D004263 7.3e-30 133.7 71 93.0
Prupe.1G244800 Prunus persica HOM05D003422 ORTHO05D004263 7.3e-30 133.7 71 93.0
Prupe.8G016700 Prunus persica HOM05D003422 ORTHO05D004263 7.3e-30 133.7 71 93.0
Rhsim12G0110100 Rhododendron simsii HOM05D003422 ORTHO05D004263 7.3e-30 133.7 70 94.3
RcHm_v2.0_Chr4g0433011 Rosa chinensis HOM05D003422 ORTHO05D004263 7.3e-30 133.7 71 93.0
Sc14g0008740 Simmondsia chinensis HOM05D003422 ORTHO05D004263 7.3e-30 133.7 71 93.0
TWI23G0208 Tripterygium wilfordii HOM05D003422 ORTHO05D004263 7.3e-30 133.7 71 93.0
TWI39G0719 Tripterygium wilfordii HOM05D003422 ORTHO05D004263 7.3e-30 133.7 71 93.0
Rhsim06G0078600 Rhododendron simsii HOM05D003422 ORTHO05D004263 9.5e-30 133.3 70 92.9
CiPaw.05G181800 Carya illinoinensis HOM05D003422 ORTHO05D004263 1.2e-29 132.9 71 91.5
Eucgr.K01009 Eucalyptus grandis HOM05D003422 ORTHO05D004263 1.6e-29 132.5 71 91.5
Prupe.8G011700 Prunus persica HOM05D003422 ORTHO05D004263 2.1e-29 132.1 71 91.5
CSS0036067 Camellia sinensis var. sinensis HOM05D003422 ORTHO05D004263 2.8e-29 131.7 71 90.1
CiPaw.05G159400 Carya illinoinensis HOM05D003422 ORTHO05D004263 2.8e-29 131.7 71 90.1
Cc11_g15770 Coffea canephora HOM05D003422 ORTHO05D004263 2.8e-29 131.7 71 90.1
Hma1.2p1_3343F.1_g335440 Hydrangea macrophylla HOM05D003422 ORTHO05D004263 2.8e-29 131.7 71 90.1
Peaxi162Scf00128g00219 Petunia axillaris HOM05D003422 ORTHO05D004263 2.8e-29 131.7 71 91.5
Solyc01g005810.3 Solanum lycopersicum HOM05D003422 ORTHO05D004263 2.8e-29 131.7 71 91.5
Sopen01g001810 Solanum pennellii HOM05D003422 ORTHO05D004263 2.8e-29 131.7 71 91.5
PGSC0003DMG400032131 Solanum tuberosum HOM05D003422 ORTHO05D004263 2.8e-29 131.7 71 91.5
FvH4_4g25580 Fragaria vesca HOM05D003422 ORTHO05D004263 3.6e-29 131.3 71 91.5
Nn2g13933 Nelumbo nucifera HOM05D003422 ORTHO05D004263 3.6e-29 131.3 71 91.5
Nn8g40815 Nelumbo nucifera HOM05D003422 ORTHO05D004263 3.6e-29 131.3 71 91.5
QL03p058012 Quercus lobata HOM05D003422 ORTHO05D004263 3.6e-29 131.3 71 91.5
Aqoxy5G03760 Aquilegia oxysepala HOM05D003422 ORTHO05D004263 4.7e-29 131.0 75 84.0
arahy.Tifrunner.gnm1.ann1.FFB06F Arachis hypogaea HOM05D003422 ORTHO05D004263 4.7e-29 131.0 71 90.1
MD11G1214400 Malus domestica HOM05D003422 ORTHO05D004263 4.7e-29 131.0 71 91.5
Atru.chr3.1559 Acer truncatum HOM05D003422 ORTHO05D004263 6.2e-29 130.6 71 90.1
Atru.chr3.1581 Acer truncatum HOM05D003422 ORTHO05D004263 6.2e-29 130.6 71 90.1
arahy.Tifrunner.gnm1.ann1.G4VR7T Arachis hypogaea HOM05D003422 ORTHO05D004263 6.2e-29 130.6 71 88.7
arahy.Tifrunner.gnm1.ann1.I3QT17 Arachis hypogaea HOM05D003422 ORTHO05D004263 6.2e-29 130.6 71 88.7
Dinv15231 Davidia involucrata HOM05D003422 ORTHO05D004263 6.2e-29 130.6 71 90.1
Lalb_Chr04g0254851 Lupinus albus HOM05D003422 ORTHO05D004263 6.2e-29 130.6 71 90.1
Lalb_Chr10g0099861 Lupinus albus HOM05D003422 ORTHO05D004263 6.2e-29 130.6 71 90.1
Nn8g39875 Nelumbo nucifera HOM05D003422 ORTHO05D004263 6.2e-29 130.6 71 90.1
Migut.E00204 Erythranthe guttata HOM05D003422 ORTHO05D004263 8.1e-29 130.2 71 90.1
Nitab4.5_0009109g0040 Nicotiana tabacum HOM05D003422 ORTHO05D004263 8.1e-29 130.2 71 90.1
Oeu041425.1 Olea europaea HOM05D003422 ORTHO05D004263 1.1e-28 129.8 71 90.1
Sabra15G0107000 Salix brachista HOM05D003422 ORTHO05D004263 1.1e-28 129.8 71 90.1
SGA_v2.0_scaffold63G21735 Striga asiatica HOM05D003637 ORTHO05D004175 1.1e-28 129.8 71 90.1
SGA_v2.0_scaffold87G27078 Striga asiatica HOM05D003637 ORTHO05D004175 1.1e-28 129.8 71 90.1
FAN07G0682 Fragaria x ananassa HOM05D003422 ORTHO05D004263 1.8e-28 129.0 71 90.1
FAN17G2514 Fragaria x ananassa HOM05D003422 ORTHO05D004263 1.8e-28 129.0 71 90.1
unitig_21.g20608 Utricularia gibba HOM05D003422 ORTHO05D004263 1.8e-28 129.0 71 90.1
CAN.G158.25 Capsicum annuum HOM05D003422 ORTHO05D004263 2.3e-28 128.6 71 88.7
HanXRQChr06g0172831 Helianthus annuus HOM05D003422 ORTHO05D004263 2.3e-28 128.6 71 88.7
Hund06028 Selenicereus undatus HOM05D003422 ORTHO05D004263 2.3e-28 128.6 71 91.5
Nitab4.5_0000979g0040 Nicotiana tabacum HOM05D003422 ORTHO05D004263 3.1e-28 128.3 66 95.5
Nitab4.5_0016963g0010 Nicotiana tabacum HOM05D003422 ORTHO05D004263 3.1e-28 128.3 71 88.7
Nitab4.5_0001565g0060 Nicotiana tabacum HOM05D003422 ORTHO05D004263 4.0e-28 127.9 71 88.7
Potri.012G085300 Populus trichocarpa HOM05D003422 ORTHO05D004263 4.0e-28 127.9 71 88.7
Potri.015G083700 Populus trichocarpa HOM05D003422 ORTHO05D004263 4.0e-28 127.9 71 88.7
RcHm_v2.0_Chr7g0190541 Rosa chinensis HOM05D003422 ORTHO05D004263 4.0e-28 127.9 71 90.1
Atru.chr2.1587 Acer truncatum HOM05D003422 ORTHO05D004263 5.2e-28 127.5 71 90.1
Ciclev10032237m.g Citrus clementina HOM05D003422 ORTHO05D004263 5.2e-28 127.5 71 88.7
DCAR_026512 Daucus carota HOM05D003422 ORTHO05D004263 5.2e-28 127.5 71 88.7
FAN22G1899 Fragaria x ananassa HOM05D003422 ORTHO05D004263 5.2e-28 127.5 71 88.7
QL03p061510 Quercus lobata HOM05D003422 ORTHO05D004263 5.2e-28 127.5 71 90.1
Sed0026406 Sechium edule HOM05D003422 ORTHO05D004263 5.2e-28 127.5 71 88.7
ClCG07G015410 Citrullus lanatus HOM05D003422 ORTHO05D004263 6.8e-28 127.1 71 88.7
Dinv38208 Davidia involucrata HOM05D003422 ORTHO05D004263 6.8e-28 127.1 71 87.3
ECA233G3049 Erigeron canadensis HOM05D003422 ORTHO05D004263 6.8e-28 127.1 71 87.3
Lsat_1_v5_gn_8_152261 Lactuca sativa HOM05D003422 ORTHO05D004263 6.8e-28 127.1 71 88.7
Cpa.g.sc33.23 Carica papaya HOM05D003422 ORTHO05D004263 8.9e-28 126.7 71 87.3
MELO3C017744.2 Cucumis melo HOM05D003422 ORTHO05D004263 8.9e-28 126.7 71 87.3
Glyma.12G119800 Glycine max HOM05D003422 ORTHO05D004263 8.9e-28 126.7 71 87.3
Sed0010066 Sechium edule HOM05D003422 ORTHO05D004263 8.9e-28 126.7 71 87.3
Phvul.010G035100 Phaseolus vulgaris HOM05D003422 ORTHO05D004263 1.2e-27 126.3 71 85.9
Phvul.011G000100 Phaseolus vulgaris HOM05D003422 ORTHO05D004263 1.2e-27 126.3 71 85.9
PGR102G0689 Punica granatum HOM05D003422 ORTHO05D004263 1.2e-27 126.3 71 87.3
Sabra12G0061400 Salix brachista HOM05D003422 ORTHO05D004263 1.2e-27 126.3 68 91.2
GSVIVG01007655001 Vitis vinifera HOM05D003422 ORTHO05D004263 1.2e-27 126.3 71 87.3
GSVIVG01021879001 Vitis vinifera HOM05D003422 ORTHO05D004263 1.2e-27 126.3 71 87.3
CsaV3_4G003000 Cucumis sativus L. HOM05D003422 ORTHO05D004263 2.0e-27 125.6 71 85.9
TAR622G0502 Trochodendron aralioides HOM05D003422 ORTHO05D004263 2.6e-27 125.2 71 87.3
Glyma.06G286100 Glycine max HOM05D003422 ORTHO05D004263 3.4e-27 124.8 71 84.5
Aa31LG7G7310 Aethionema arabicum HOM05D003422 ORTHO05D004263 4.4e-27 124.4 71 85.9
COL.COLO4_05559 Corchorus olitorius HOM05D003422 ORTHO05D004263 5.8e-27 124.0 71 85.9
Lsat_1_v5_gn_5_166341 Lactuca sativa HOM05D003422 ORTHO05D004263 5.8e-27 124.0 71 87.3
Gohir.A12G199400 Gossypium hirsutum HOM05D003422 ORTHO05D004263 7.5e-27 123.6 71 85.9
Gohir.D12G202200 Gossypium hirsutum HOM05D003422 ORTHO05D004263 7.5e-27 123.6 71 85.9
Gorai.008G217200 Gossypium raimondii HOM05D003422 ORTHO05D004263 7.5e-27 123.6 71 85.9
Lj1g0018398 Lotus japonicus HOM05D003422 ORTHO05D004263 7.5e-27 123.6 70 85.7
Manes.13G024200 Manihot esculenta HOM05D003422 ORTHO05D004263 9.9e-27 123.2 71 85.9
VMungo1127G0899 Vigna mungo HOM05D003422 ORTHO05D004263 9.9e-27 123.2 71 84.5
THA.LOC104822989 Tarenaya hassleriana HOM05D003422 ORTHO05D004263 1.3e-26 122.9 71 85.9
ATR0824G091 Amborella trichopoda HOM05D003422 ORTHO05D004263 1.7e-26 122.5 71 87.3
SpUn0343_0020 Schrenkiella parvula HOM05D003422 ORTHO05D004263 1.7e-26 122.5 71 81.7
BcaB05g24600 Brassica carinata HOM05D003422 ORTHO05D004263 2.2e-26 122.1 71 84.5
BcaC03g15214 Brassica carinata HOM05D003422 ORTHO05D004263 2.2e-26 122.1 71 84.5
BcaC08g45809 Brassica carinata HOM05D003422 ORTHO05D004263 2.2e-26 122.1 71 84.5
A07p31020 Brassica napus HOM05D003422 ORTHO05D004263 2.2e-26 122.1 71 84.5
C02p28010 Brassica napus HOM05D003422 ORTHO05D004263 2.2e-26 122.1 71 84.5
C06p36020 Brassica napus HOM05D003422 ORTHO05D004263 2.2e-26 122.1 71 84.5
BolC2t08844H Brassica oleracea HOM05D003422 ORTHO05D004263 2.2e-26 122.1 71 84.5
BolC6t38723H Brassica oleracea HOM05D003422 ORTHO05D004263 2.2e-26 122.1 71 84.5
Thhalv10008312m.g Eutrema salsugineum HOM05D003422 ORTHO05D004263 2.9e-26 121.7 67 86.6
FAN06G1621 Fragaria x ananassa HOM05D003422 ORTHO05D004263 2.9e-26 121.7 71 84.5
Sp5g25830 Schrenkiella parvula HOM05D003422 ORTHO05D004263 2.9e-26 121.7 71 83.1
CARHR023720 Cardamine hirsuta HOM05D003422 ORTHO05D004263 3.7e-26 121.3 71 83.1
Duzib068G0444 Durio zibethinus HOM05D003422 ORTHO05D004263 3.7e-26 121.3 71 83.1
Thecc.03G025100 Theobroma cacao HOM05D003422 ORTHO05D004263 3.7e-26 121.3 71 84.5
PSO478G1628 Papaver somniferum HOM05D003422 ORTHO05D004263 4.9e-26 120.9 67 85.1
Psat7g167080 Pisum sativum HOM05D003422 ORTHO05D004263 4.9e-26 120.9 70 84.3
BcaB03g15550 Brassica carinata HOM05D003422 ORTHO05D004263 6.4e-26 120.6 71 83.1
PSO017G5618 Papaver somniferum HOM05D003422 ORTHO05D004263 6.4e-26 120.6 71 81.7
TPR.G28314 Trifolium pratense HOM05D003422 ORTHO05D004263 6.4e-26 120.6 67 86.6
AT1G23280 Arabidopsis thaliana HOM05D003422 ORTHO05D004263 8.3e-26 120.2 67 88.1
BraA02t06729Z Brassica rapa HOM05D003422 ORTHO05D004263 8.3e-26 120.2 71 83.1
A02p16750 Brassica napus HOM05D003422 ORTHO05D004263 1.1e-25 119.8 71 83.1
Ca_20120_v3 Cicer arietinum L. HOM05D003422 ORTHO05D004263 1.1e-25 119.8 70 81.4
TPR.G37166 Trifolium pratense HOM05D003422 ORTHO05D004263 1.1e-25 119.8 67 86.6
Carub.0001s2287 Capsella rubella HOM05D003422 ORTHO05D004263 1.4e-25 119.4 71 81.7
PSO017G4826 Papaver somniferum HOM05D003422 ORTHO05D004263 1.4e-25 119.4 67 85.1
TAR374G1409 Trochodendron aralioides HOM05D003422 ORTHO05D004263 1.9e-25 119.0 69 84.1
Medtr2g103560 Medicago truncatula HOM05D003422 ORTHO05D004263 2.4e-25 118.6 71 81.7
A03p43080 Brassica napus HOM05D003422 ORTHO05D004263 9.2e-25 116.7 71 78.9
HPP92_014432 Vanilla planifolia HOM05D003422 ORTHO05D004263 9.2e-25 116.7 71 80.3
AL1G31870 Arabidopsis lyrata HOM05D003422 ORTHO05D004263 1.2e-24 116.3 67 85.1
BraA03t13450Z Brassica rapa HOM05D003422 ORTHO05D004263 1.6e-24 115.9 70 80.0
SEGI_07600 Sequoiadendron giganteum HOM05D003422 ORTHO05D004263 1.6e-24 115.9 71 83.1
BcaC01g03409 Brassica carinata HOM05D003422 ORTHO05D004263 2.1e-24 115.5 67 82.1
C03p52870 Brassica napus HOM05D003422 ORTHO05D004263 2.1e-24 115.5 67 82.1
BolC3t17554H Brassica oleracea HOM05D003422 ORTHO05D004263 2.1e-24 115.5 70 80.0
ATR0996G003 Amborella trichopoda HOM05D003422 ORTHO05D004263 3.5e-24 114.8 71 80.3
CDE02G2608 Ceratophyllum demersum HOM05D003422 ORTHO05D004263 1.0e-23 113.2 71 77.5
Mapoly0061s0104 Marchantia polymorpha HOM05D003422 ORTHO05D004263 1.0e-23 113.2 71 78.9
Pp3c2_4220 Physcomitrium patens HOM05D003422 ORTHO05D004263 1.7e-23 112.5 71 80.3
Os07g0270900 Oryza sativa ssp. japonica HOM05D003422 ORTHO05D004263 2.3e-23 112.1 71 76.1
SMO331G0073 Selaginella moellendorffii HOM05D003422 ORTHO05D004263 3.9e-23 111.3 71 76.1
Zm00001eb364260 Zea mays HOM05D003422 ORTHO05D004263 5.1e-23 110.9 71 74.6
BcaC09g49229 Brassica carinata HOM05D003422 ORTHO05D004263 6.6e-23 110.5 71 74.6
SEGI_01875 Sequoiadendron giganteum HOM05D003422 ORTHO05D004263 8.6e-23 110.2 68 82.4
AL1G37060 Arabidopsis lyrata HOM05D003422 ORTHO05D004263 1.1e-22 109.8 67 80.6
A01p32170 Brassica napus HOM05D003422 ORTHO05D004263 3.3e-22 108.2 70 74.3
CBR_g32274 Chara braunii HOM05D003422 ORTHO05D004263 4.7e-21 104.4 70 74.3
BraA01t03342Z Brassica rapa HOM05D003422 ORTHO05D004263 1.1e-20 103.2 66 75.8
CDE05G1364 Ceratophyllum demersum HOM05D003422 ORTHO05D004263 2.0e-19 99.0 65 75.4
BcaB04g17046 Brassica carinata HOM05D003422 ORTHO05D004263 3.4e-19 98.2 63 76.2
PRCOL_00004566 Prasinoderma coloniale HOM05D003422 ORTHO05D004263 1.7e-18 95.9 70 68.6
BcaB01g03637 Brassica carinata HOM05D003422 ORTHO05D004263 6.4e-18 94.0 67 74.6
Cre02.g145231 Chlamydomonas reinhardtii HOM05D003422 ORTHO05D004263 6.4e-18 94.0 71 62.0
vmacro17129 Vaccinium macrocarpon HOM05D003422 ORTHO05D004263 6.4e-18 94.0 45 93.3
Cfa026988 Carpinus fangiana HOM05D003422 ORTHO05D004263 3.2e-17 91.7 63 61.9
BcaB07g33435 Brassica carinata HOM05D003422 ORTHO05D004263 1.6e-16 89.4 61 73.8
AUR62003555 Chenopodium quinoa HOM05D003422 ORTHO05D004263 1.7e-15 85.9 46 78.3
AUR62017869 Chenopodium quinoa HOM05D003422 ORTHO05D004263 1.7e-15 85.9 46 78.3
EL10Ac6g13812 Beta vulgaris HOM05D003422 ORTHO05D004263 1.9e-14 82.4 41 90.2
BolC4t24676H Brassica oleracea HOM05D003422 ORTHO05D004263 9.6e-14 80.1 70 64.3
BcaC02g10230 Brassica carinata HOM05D003422 ORTHO05D004263 1.4e-12 76.3 68 63.2
Haze_26253 Corylus avellana HOM05D003422 ORTHO05D004263 3.1e-12 75.1 73 52.1
Medtr4g079190 Medicago truncatula HOM05D003422 ORTHO05D004263 2.6e-11 72.0 70 57.1
MCO01G280 Micromonas commoda HOM05D003422 ORTHO05D004263 5.8e-11 70.9 71 49.3
Lj1A759T42 Lonicera japonica HOM05D003422 ORTHO05D004263 2.2e-10 68.9 37 91.9
BcaB01g02833 Brassica carinata HOM05D003422 ORTHO05D004263 2.9e-10 68.6 67 61.2
Actinidia01349 Actinidia chinensis HOM05D003422 ORTHO05D004263 3.8e-10 68.2 49 69.4
vmacro16194 Vaccinium macrocarpon HOM05D003422 ORTHO05D004263 4.9e-10 67.8 56 60.7
AagrBONN_evm.TU.Sc2ySwM_344.1527 Anthoceros agrestis HOM05D003422 ORTHO05D004263 1.4e-09 66.2 71 54.9
Oeu036040.1 Olea europaea HOM05D003422 ORTHO05D004263 2.4e-09 65.5 34 94.1
Ah.04g165080 Amaranthus hybridus HOM05D002611 ORTHO05D002822 3.2e-09 65.1 37 86.5
Pp3c1_36430 Physcomitrium patens HOM05D003422 ORTHO05D004263 4.2e-09 64.7 37 78.4
FvH4_7g31100 Fragaria vesca HOM05D003422 ORTHO05D004263 1.5e-06 56.2 31 80.6
TWI60G0838 Tripterygium wilfordii HOM05D003422 ORTHO05D413943 2.5e-06 55.5 27 88.9


User provided reference genes

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