Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B00855 Eucalyptus grandis HOM05D002209 ORTHO05D004761 1.5e-206 722.6 371 100.0
Dinv29939 Davidia involucrata HOM05D002209 ORTHO05D004761 9.0e-143 510.8 365 69.3
COL.COLO4_05870 Corchorus olitorius HOM05D002209 ORTHO05D004761 5.9e-142 508.1 370 68.4
Gohir.A09G051300 Gossypium hirsutum HOM05D002209 ORTHO05D004761 1.7e-141 506.5 370 68.9
PGR083G2774 Punica granatum HOM05D002209 ORTHO05D004761 2.9e-141 505.8 370 69.5
Thecc.03G048800 Theobroma cacao HOM05D002209 ORTHO05D004761 2.9e-141 505.8 370 68.4
Gorai.006G057200 Gossypium raimondii HOM05D002209 ORTHO05D004761 1.4e-140 503.4 370 68.4
Gohir.D09G052400 Gossypium hirsutum HOM05D002209 ORTHO05D004761 3.2e-140 502.3 370 68.4
Duzib084G0729 Durio zibethinus HOM05D002209 ORTHO05D004761 2.7e-139 499.2 370 67.6
GSVIVG01008394001 Vitis vinifera HOM05D002209 ORTHO05D004761 3.6e-139 498.8 368 69.6
Duzib205G0470 Durio zibethinus HOM05D002209 ORTHO05D004761 1.0e-138 497.3 370 66.8
Dinv24643 Davidia involucrata HOM05D002209 ORTHO05D004761 1.8e-138 496.5 365 67.7
Lj9A421T102 Lonicera japonica HOM05D002209 ORTHO05D004761 4.8e-136 488.4 365 68.2
CSS0032919 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 8.2e-136 487.6 365 67.1
Manes.06G008500 Manihot esculenta HOM05D002209 ORTHO05D004761 6.9e-135 484.6 372 66.4
CSS0009925 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.2e-134 483.8 364 66.8
Rhsim07G0079200 Rhododendron simsii HOM05D002209 ORTHO05D004761 1.5e-134 483.4 368 64.9
RhsimUnG0064800 Rhododendron simsii HOM05D002209 ORTHO05D004761 1.1e-132 477.2 381 63.0
TWI81G0085 Tripterygium wilfordii HOM05D002209 ORTHO05D004761 3.6e-131 472.2 368 63.3
Cc04_g06630 Coffea canephora HOM05D002209 ORTHO05D004761 1.4e-130 470.3 369 62.1
Potri.012G049700 Populus trichocarpa HOM05D002209 ORTHO05D004761 4.4e-129 465.3 367 63.8
Potri.015G041700 Populus trichocarpa HOM05D002209 ORTHO05D004761 9.7e-129 464.2 367 63.8
Ciclev10008707m.g Citrus clementina HOM05D002209 ORTHO05D004761 4.8e-128 461.8 370 63.0
MD00G1160600 Malus domestica HOM05D002209 ORTHO05D004761 1.1e-127 460.7 367 64.6
Lj4g0012439 Lotus japonicus HOM05D002209 ORTHO05D004761 1.8e-127 459.9 370 61.4
CANSAT80G1163 Cannabis sativa HOM05D002209 ORTHO05D004761 2.4e-127 459.5 366 61.5
CANSAT80G2224 Cannabis sativa HOM05D002209 ORTHO05D004761 2.4e-127 459.5 366 61.5
CAN.G1129.31 Capsicum annuum HOM05D002209 ORTHO05D004761 1.6e-126 456.8 368 60.6
Atru.chr9.949 Acer truncatum HOM05D002209 ORTHO05D004761 2.6e-126 456.1 370 63.0
MD14G1233700 Malus domestica HOM05D002209 ORTHO05D004761 1.7e-125 453.4 371 63.3
Peaxi162Scf00683g00231 Petunia axillaris HOM05D002209 ORTHO05D004761 1.7e-125 453.4 365 61.1
Prupe.5G229900 Prunus persica HOM05D002209 ORTHO05D004761 2.9e-125 452.6 371 63.6
Glyma.05G243700 Glycine max HOM05D002209 ORTHO05D004761 3.8e-125 452.2 370 61.6
Sed0007305 Sechium edule HOM05D002209 ORTHO05D004761 4.2e-124 448.7 371 62.0
MSTRG.4560 Avicennia marina HOM05D002209 ORTHO05D004761 5.5e-124 448.4 364 62.1
Nitab4.5_0001158g0020 Nicotiana tabacum HOM05D002209 ORTHO05D004761 5.5e-124 448.4 367 59.4
CsaV3_1G004130 Cucumis sativus L. HOM05D002209 ORTHO05D004761 9.4e-124 447.6 368 61.7
Peaxi162Scf01127g00030 Petunia axillaris HOM05D002209 ORTHO05D004761 9.4e-124 447.6 369 58.5
Glyma.08G051500 Glycine max HOM05D002209 ORTHO05D004761 1.2e-123 447.2 370 60.5
RcHm_v2.0_Chr7g0178801 Rosa chinensis HOM05D002209 ORTHO05D004761 4.7e-123 445.3 371 61.7
Actinidia35110 Actinidia chinensis HOM05D002209 ORTHO05D004761 1.4e-122 443.7 324 69.1
Phvul.002G327400 Phaseolus vulgaris HOM05D002209 ORTHO05D004761 3.0e-122 442.6 370 59.5
Nn3g18057 Nelumbo nucifera HOM05D002209 ORTHO05D004761 6.7e-122 441.4 370 60.3
Nitab4.5_0012369g0030 Nicotiana tabacum HOM05D002209 ORTHO05D004761 2.6e-121 439.5 383 56.9
PGSC0003DMG402005658 Solanum tuberosum HOM05D002209 ORTHO05D004761 2.6e-121 439.5 368 58.4
DCAR_011382 Daucus carota HOM05D002209 ORTHO05D004761 7.5e-121 438.0 365 60.3
Lalb_Chr16g0387141 Lupinus albus HOM05D002209 ORTHO05D004761 7.5e-121 438.0 370 60.0
Sopen03g037920 Solanum pennellii HOM05D002209 ORTHO05D004761 7.5e-121 438.0 368 57.6
VMungo0251G1482 Vigna mungo HOM05D002209 ORTHO05D004761 7.5e-121 438.0 369 58.5
Solyc03g119030.4 Solanum lycopersicum HOM05D002209 ORTHO05D004761 9.7e-121 437.6 368 57.9
TPR.G12929 Trifolium pratense HOM05D002209 ORTHO05D004761 1.7e-120 436.8 371 60.4
Hma1.2p1_0669F.1_g200340 Hydrangea macrophylla HOM05D002209 ORTHO05D004761 4.8e-120 435.3 372 61.0
MSTRG.9285 Avicennia marina HOM05D002209 ORTHO05D004761 6.3e-120 434.9 368 57.6
Nn4g24077 Nelumbo nucifera HOM05D002209 ORTHO05D004761 2.4e-119 433.0 369 59.9
FAN18G1515 Fragaria x ananassa HOM05D002209 ORTHO05D004761 3.1e-119 432.6 370 60.5
FAN08G3349 Fragaria x ananassa HOM05D002209 ORTHO05D004761 5.3e-119 431.8 372 60.5
CiPaw.16G090800 Carya illinoinensis HOM05D002209 ORTHO05D004761 1.2e-118 430.6 367 59.4
FvH4_5g17050 Fragaria vesca HOM05D002209 ORTHO05D004761 1.2e-118 430.6 370 60.5
Lsat_1_v5_gn_3_1001 Lactuca sativa HOM05D002209 ORTHO05D004761 2.0e-118 429.9 368 60.6
HanXRQChr05g0144521 Helianthus annuus HOM05D002209 ORTHO05D004761 2.7e-118 429.5 369 60.2
vmacro16528 Vaccinium macrocarpon HOM05D002209 ORTHO05D004761 4.5e-118 428.7 368 59.5
MBI10_g07297_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 1.7e-117 426.8 369 59.6
Lalb_Chr09g0330521 Lupinus albus HOM05D002209 ORTHO05D004761 6.5e-117 424.9 371 59.0
Medtr8g106780 Medicago truncatula HOM05D002209 ORTHO05D004761 1.5e-116 423.7 371 58.8
ClCG06G014470 Citrullus lanatus HOM05D002209 ORTHO05D004761 1.6e-115 420.2 369 59.1
FAN13G0599 Fragaria x ananassa HOM05D002209 ORTHO05D004761 8.0e-115 417.9 367 59.1
SalBow1G1036 Salvia bowleyana HOM05D002209 ORTHO05D004761 1.4e-114 417.2 391 53.5
ECA246G4025 Erigeron canadensis HOM05D002209 ORTHO05D004761 2.3e-114 416.4 332 62.3
TAR629G1642 Trochodendron aralioides HOM05D002209 ORTHO05D004761 3.0e-114 416.0 315 65.7
THA.LOC104821836 Tarenaya hassleriana HOM05D002209 ORTHO05D004761 2.0e-113 413.3 372 58.1
arahy.Tifrunner.gnm1.ann1.6WJC3X Arachis hypogaea HOM05D002209 ORTHO05D004761 5.7e-113 411.8 407 53.1
Lalb_Chr05g0221871 Lupinus albus HOM05D002209 ORTHO05D004761 7.5e-113 411.4 371 57.1
Sc12g0007380 Simmondsia chinensis HOM05D002209 ORTHO05D004761 1.7e-112 410.2 368 55.2
EL10Ac8g19603 Beta vulgaris HOM05D002209 ORTHO05D004761 2.4e-111 406.4 402 54.0
PSO782G2563 Papaver somniferum HOM05D002209 ORTHO05D004761 2.4e-111 406.4 373 56.3
AT1G48635 Arabidopsis thaliana HOM05D002209 ORTHO05D004761 3.5e-110 402.5 368 55.4
Sabra15G0063000 Salix brachista HOM05D002209 ORTHO05D004761 4.5e-110 402.1 483 47.4
THA.LOC104820369 Tarenaya hassleriana HOM05D002209 ORTHO05D004761 4.5e-110 402.1 373 56.0
Aqoxy3G03975 Aquilegia oxysepala HOM05D002209 ORTHO05D004761 2.2e-109 399.8 371 54.7
Nitab4.5_0000150g0110 Nicotiana tabacum HOM05D002209 ORTHO05D004761 8.5e-109 397.9 387 52.5
Ca_17220_v3 Cicer arietinum L. HOM05D002209 ORTHO05D004761 1.1e-108 397.5 357 57.7
AL1G55300 Arabidopsis lyrata HOM05D002209 ORTHO05D004761 4.2e-108 395.6 368 54.9
AL3G31330 Arabidopsis lyrata HOM05D002209 ORTHO05D004761 1.2e-107 394.0 369 55.8
Carub.0001s3778 Capsella rubella HOM05D002209 ORTHO05D004761 6.1e-107 391.7 368 54.9
PSO063G7528 Papaver somniferum HOM05D002209 ORTHO05D004761 8.0e-107 391.3 367 55.6
TAR622G1360 Trochodendron aralioides HOM05D002209 ORTHO05D004761 1.4e-106 390.6 317 63.7
Sabra15G0055400 Salix brachista HOM05D002209 ORTHO05D004761 1.8e-106 390.2 505 45.1
Sp1g35610 Schrenkiella parvula HOM05D002209 ORTHO05D004761 5.2e-106 388.7 369 53.9
AT3G18160 Arabidopsis thaliana HOM05D002209 ORTHO05D004761 2.0e-105 386.7 369 54.5
CARHR093480 Cardamine hirsuta HOM05D002209 ORTHO05D004761 4.4e-105 385.6 368 54.3
Aa31LG10G5170 Aethionema arabicum HOM05D003754 ORTHO05D004530 7.5e-105 384.8 366 53.6
CARHR038280 Cardamine hirsuta HOM05D002209 ORTHO05D004761 1.3e-104 384.0 369 53.9
BcaB07g33725 Brassica carinata HOM05D002209 ORTHO05D004761 2.2e-104 383.3 369 53.7
Duzib068G1457 Durio zibethinus HOM05D002209 ORTHO05D004761 2.2e-104 383.3 370 56.5
A06p04280 Brassica napus HOM05D002209 ORTHO05D004761 1.1e-103 380.9 370 52.4
Thhalv10011573m.g Eutrema salsugineum HOM05D002209 ORTHO05D004761 3.1e-103 379.4 383 53.0
Migut.D01447 Erythranthe guttata HOM05D002209 ORTHO05D004761 5.4e-103 378.6 365 52.9
Carub.0003s1787 Capsella rubella HOM05D002209 ORTHO05D004761 1.2e-102 377.5 370 53.8
Sp3g16270 Schrenkiella parvula HOM05D002209 ORTHO05D004761 2.0e-102 376.7 368 52.7
C06p03290 Brassica napus HOM05D002209 ORTHO05D004761 2.7e-102 376.3 369 53.4
BcaB04g18980 Brassica carinata HOM05D002209 ORTHO05D004761 3.5e-102 375.9 367 54.2
BcaC08g43072 Brassica carinata HOM05D002209 ORTHO05D004761 7.7e-102 374.8 369 53.1
MBI16_g47222_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 2.3e-101 373.2 371 53.1
BcaB04g20791 Brassica carinata HOM05D002209 ORTHO05D004761 5.0e-101 372.1 369 53.4
Aa31LG8G4990 Aethionema arabicum HOM05D002209 ORTHO05D004761 1.9e-100 370.2 356 55.1
SHI19025 Sapria himalayana HOM05D002209 ORTHO05D000001 1.9e-100 370.2 373 52.0
Cpa.g.sc3.426 Carica papaya HOM05D002209 ORTHO05D004761 2.8e-99 366.3 313 60.4
BcaC09g48771 Brassica carinata HOM05D002209 ORTHO05D004761 3.6e-99 365.9 366 53.3
Thhalv10020989m.g Eutrema salsugineum HOM05D002209 ORTHO05D004761 4.7e-99 365.5 368 51.9
BolC3t17231H Brassica oleracea HOM05D002209 ORTHO05D004761 8.0e-99 364.8 371 52.3
BraA06t23631Z Brassica rapa HOM05D002209 ORTHO05D004761 5.2e-98 362.1 406 48.0
BolC6t35461H Brassica oleracea HOM05D002209 ORTHO05D004761 6.8e-98 361.7 402 48.8
Hund22655 Selenicereus undatus HOM05D002209 ORTHO05D004761 8.9e-98 361.3 354 55.4
Nitab4.5_0012395g0010 Nicotiana tabacum HOM05D002209 ORTHO05D004761 1.2e-97 360.9 316 56.6
Psat7g003880 Pisum sativum HOM05D002209 ORTHO05D004761 1.5e-97 360.5 313 59.4
BraA03t13213Z Brassica rapa HOM05D002209 ORTHO05D004761 2.6e-97 359.8 371 51.5
Sed0027899 Sechium edule HOM05D002209 ORTHO05D004761 1.3e-96 357.5 283 61.1
MELO3C017339.2 Cucumis melo HOM05D002209 ORTHO05D004761 2.2e-96 356.7 285 62.1
A03p40560 Brassica napus HOM05D002209 ORTHO05D004761 4.9e-96 355.5 367 51.2
C03p49370 Brassica napus HOM05D002209 ORTHO05D004761 4.9e-96 355.5 381 50.9
BraA01t03699Z Brassica rapa HOM05D002209 ORTHO05D007926 7.0e-95 351.7 354 52.8
C01p46070 Brassica napus HOM05D002209 ORTHO05D007926 9.2e-95 351.3 355 52.7
AUR62002654 Chenopodium quinoa HOM05D002209 ORTHO05D004761 9.2e-95 351.3 310 58.7
BolC1t04568H Brassica oleracea HOM05D002209 ORTHO05D007926 2.7e-94 349.7 354 52.8
Haze_18790 Corylus avellana HOM05D002209 ORTHO05D004761 5.9e-94 348.6 565 40.7
CDE02G4061 Ceratophyllum demersum HOM05D002209 ORTHO05D004761 6.6e-93 345.1 368 50.5
BcaC01g03707 Brassica carinata HOM05D002209 ORTHO05D004761 1.2e-91 340.9 373 49.9
HPP92_008203 Vanilla planifolia HOM05D002209 ORTHO05D004761 1.2e-91 340.9 369 47.7
SGA_v2.0_scaffold171G38932 Striga asiatica HOM05D002209 ORTHO05D004761 3.4e-89 332.8 478 40.0
CSS0022680 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.2e-78 297.7 210 71.0
MBI16_g47372_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 1.6e-78 297.4 299 54.8
Oeu017507.1 Olea europaea HOM05D002209 ORTHO05D004761 6.6e-77 292.0 210 68.1
A01p36240 Brassica napus HOM05D002209 ORTHO05D007926 2.1e-75 287.0 300 52.0
AUR62040790 Chenopodium quinoa HOM05D002209 ORTHO05D004761 1.3e-72 277.7 310 50.0
Zm00001eb098030 Zea mays HOM05D002209 ORTHO05D004761 8.4e-72 275.0 315 44.8
FAN04G3108 Fragaria x ananassa HOM05D002209 ORTHO05D004761 3.5e-70 269.6 210 65.2
CSS0038011 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 3.6e-67 259.6 206 65.0
QL10p027517 Quercus lobata HOM05D002209 ORTHO05D004761 3.1e-66 256.5 203 63.1
CSS0040553 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 4.0e-66 256.1 206 64.6
Sopen12g020100 Solanum pennellii HOM05D002209 ORTHO05D004761 8.9e-66 255.0 208 60.6
Solyc12g040500.2 Solanum lycopersicum HOM05D002209 ORTHO05D004761 1.5e-65 254.2 207 60.9
CSS0012524 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 9.9e-65 251.5 164 75.0
CSS0005213 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 2.7e-62 243.4 162 72.8
Gorai.007G186700 Gossypium raimondii HOM05D002209 ORTHO05D004761 7.8e-62 241.9 166 71.1
Gohir.D08G140100 Gossypium hirsutum HOM05D002209 ORTHO05D004761 5.1e-61 239.2 166 71.1
Gorai.008G042300 Gossypium raimondii HOM05D002209 ORTHO05D004761 5.1e-61 239.2 166 69.9
Mapoly0003s0191 Marchantia polymorpha HOM05D002209 ORTHO05D004761 6.6e-61 238.8 375 36.8
Psat0s3278g0200 Pisum sativum HOM05D002209 ORTHO05D004761 7.3e-60 235.3 288 47.2
Gorai.004G122400 Gossypium raimondii HOM05D002209 ORTHO05D004761 1.1e-58 231.5 169 67.5
Hma1.2p1_0669F.1_g200330 Hydrangea macrophylla HOM05D002209 ORTHO05D004761 1.1e-58 231.5 165 67.9
SEGI_04696 Sequoiadendron giganteum HOM05D002209 ORTHO05D004761 9.0e-58 228.4 342 37.7
Pp3c24_12050 Physcomitrium patens HOM05D002209 ORTHO05D004761 9.9e-57 224.9 374 38.0
Pp3c8_16550 Physcomitrium patens HOM05D002209 ORTHO05D004761 2.9e-56 223.4 373 38.9
AagrBONN_evm.TU.Sc2ySwM_344.1865 Anthoceros agrestis HOM05D002209 ORTHO05D004761 6.4e-56 222.2 380 36.1
Gohir.D13G126266 Gossypium hirsutum HOM05D002209 ORTHO05D004761 1.1e-55 221.5 166 66.9
CSS0016222 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.3e-51 208.0 189 60.3
CBR_g38112 Chara braunii HOM05D002209 ORTHO05D004761 4.0e-50 203.0 369 34.1
Pp3c20_5170 Physcomitrium patens HOM05D002209 ORTHO05D004761 4.0e-50 203.0 372 35.2
PGSC0003DMG400015821 Solanum tuberosum HOM05D002209 ORTHO05D004761 9.0e-50 201.8 158 63.3
SMO367G0254 Selaginella moellendorffii HOM05D002209 ORTHO05D004761 1.4e-47 194.5 379 34.8
unitig_0.g802 Utricularia gibba HOM05D002209 ORTHO05D004761 1.8e-45 187.6 204 46.1
GSVIVG01008387001 Vitis vinifera HOM05D002209 ORTHO05D004761 2.3e-45 187.2 163 60.1
CSS0034654 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 9.0e-42 175.3 110 79.1
CSS0050298 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 4.5e-41 172.9 152 61.8
SEGI_01637 Sequoiadendron giganteum HOM05D002209 ORTHO05D004761 4.5e-41 172.9 260 38.5
Gorai.008G062000 Gossypium raimondii HOM05D002209 ORTHO05D004761 6.5e-40 169.1 127 63.0
CAN.G197.13 Capsicum annuum HOM05D002209 ORTHO05D004761 3.2e-39 166.8 123 62.6
Sopen12g020080 Solanum pennellii HOM05D002209 ORTHO05D004761 3.2e-39 166.8 161 48.4
Solyc12g040480.2 Solanum lycopersicum HOM05D002209 ORTHO05D004761 4.2e-39 166.4 161 47.8
ATR0326G049 Amborella trichopoda HOM05D002209 ORTHO05D004761 1.0e-29 135.2 172 44.8
PGSC0003DMG400015822 Solanum tuberosum HOM05D002209 ORTHO05D004761 1.0e-29 135.2 138 45.7
Oeu017505.1 Olea europaea HOM05D002209 ORTHO05D004761 1.8e-29 134.4 139 51.1
Os09g0314300 Oryza sativa ssp. japonica HOM05D002209 ORTHO05D004761 3.9e-29 133.3 124 50.8
Oeu053224.1 Olea europaea HOM05D002209 ORTHO05D004761 2.5e-28 130.6 138 47.8
PRCOL_00001207 Prasinoderma coloniale HOM05D006727 ORTHO05D008408 6.1e-22 109.4 260 29.2
AagrBONN_evm.TU.Sc2ySwM_368.2096 Anthoceros agrestis HOM05D002209 ORTHO05D004761 1.5e-17 94.7 305 27.2
Cfa024504 Carpinus fangiana HOM05D002209 ORTHO05D004761 4.2e-07 60.1 435 23.9


User provided reference genes

Program Settings