Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B00826 Eucalyptus grandis HOM05D004238 ORTHO05D004934 4.4e-175 617.8 308 100.0
Eucgr.B00825 Eucalyptus grandis HOM05D004238 ORTHO05D004934 3.6e-137 491.9 369 71.8
PGR083G1292 Punica granatum HOM05D004238 ORTHO05D004934 1.9e-109 399.8 382 58.4
Atru.chr9.900 Acer truncatum HOM05D004238 ORTHO05D004934 1.6e-108 396.7 367 58.0
GSVIVG01008335001 Vitis vinifera HOM05D004238 ORTHO05D004934 1.6e-108 396.7 368 59.0
Manes.01G014900 Manihot esculenta HOM05D004238 ORTHO05D004934 2.7e-108 396.0 332 63.3
Potri.012G054200 Populus trichocarpa HOM05D004238 ORTHO05D004934 3.3e-106 389.0 369 57.5
RcHm_v2.0_Chr7g0179451 Rosa chinensis HOM05D004238 ORTHO05D004934 3.3e-106 389.0 370 57.0
Hma1.2p1_1283F.1_g272760 Hydrangea macrophylla HOM05D004238 ORTHO05D004934 4.3e-106 388.7 368 57.6
MD14G1229600 Malus domestica HOM05D004238 ORTHO05D004934 1.3e-105 387.1 370 57.3
CiPaw.16G088800 Carya illinoinensis HOM05D004238 ORTHO05D004934 2.1e-105 386.3 368 57.3
DCAR_015154 Daucus carota HOM05D004238 ORTHO05D004934 6.2e-105 384.8 370 56.5
Duzib084G0471 Durio zibethinus HOM05D004238 ORTHO05D004934 3.1e-104 382.5 368 55.7
CANSAT80G2380 Cannabis sativa HOM05D004238 ORTHO05D004934 5.3e-104 381.7 368 56.5
FAN13G1096 Fragaria x ananassa HOM05D004238 ORTHO05D004934 6.9e-104 381.3 368 56.5
Sabra12G0038000 Salix brachista HOM05D004238 ORTHO05D004934 6.9e-104 381.3 371 55.5
Dinv28139 Davidia involucrata HOM05D004238 ORTHO05D004934 9.0e-104 380.9 368 56.5
Haze_18725 Corylus avellana HOM05D004238 ORTHO05D004934 1.5e-103 380.2 383 55.1
FAN18G3483 Fragaria x ananassa HOM05D004238 ORTHO05D004934 4.5e-103 378.6 368 56.5
Nitab4.5_0001986g0030 Nicotiana tabacum HOM05D004238 ORTHO05D004934 5.8e-103 378.3 368 55.7
PGSC0003DMG400005732 Solanum tuberosum HOM05D004238 ORTHO05D004934 7.6e-103 377.9 370 55.4
ClCG06G014610 Citrullus lanatus HOM05D004238 ORTHO05D004934 1.3e-102 377.1 368 55.4
PSO017G2643 Papaver somniferum HOM05D004238 ORTHO05D004934 1.3e-102 377.1 368 56.0
TAR535G0010 Trochodendron aralioides HOM05D004238 ORTHO05D004934 1.3e-102 377.1 368 56.2
Lj4g0001453 Lotus japonicus HOM05D004238 ORTHO05D004934 1.7e-102 376.7 368 55.4
TAR371G0763 Trochodendron aralioides HOM05D004238 ORTHO05D004934 1.7e-102 376.7 368 56.8
Thecc.03G040700 Theobroma cacao HOM05D004238 ORTHO05D004934 3.8e-102 375.6 368 55.2
MELO3C017324.2 Cucumis melo HOM05D004238 ORTHO05D004934 6.4e-102 374.8 368 54.6
FAN08G0774 Fragaria x ananassa HOM05D004238 ORTHO05D004934 6.4e-102 374.8 381 54.6
Lj9C425T3 Lonicera japonica HOM05D004238 ORTHO05D004934 6.4e-102 374.8 368 56.5
TPR.G5108 Trifolium pratense HOM05D004238 ORTHO05D004934 6.4e-102 374.8 369 55.3
CAN.G1129.11 Capsicum annuum HOM05D004238 ORTHO05D004934 1.1e-101 374.0 368 55.4
Nitab4.5_0004028g0040 Nicotiana tabacum HOM05D004238 ORTHO05D004934 1.4e-101 373.6 368 55.4
Solyc03g119200.4 Solanum lycopersicum HOM05D004238 ORTHO05D004934 1.4e-101 373.6 369 55.0
CSS0018341 Camellia sinensis var. sinensis HOM05D004238 ORTHO05D004934 1.9e-101 373.2 369 55.8
CsaV3_1G004010 Cucumis sativus L. HOM05D004238 ORTHO05D004934 2.4e-101 372.9 368 54.3
CSS0035838 Camellia sinensis var. sinensis HOM05D004238 ORTHO05D004934 3.2e-101 372.5 369 55.6
Hund02354 Selenicereus undatus HOM05D004238 ORTHO05D004934 3.2e-101 372.5 368 54.6
Nn4g23948 Nelumbo nucifera HOM05D004238 ORTHO05D004934 4.2e-101 372.1 373 54.4
TWI15G0256 Tripterygium wilfordii HOM05D004238 ORTHO05D004934 5.4e-101 371.7 364 56.3
Psat7g083560 Pisum sativum HOM05D004238 ORTHO05D004934 7.1e-101 371.3 368 54.9
Lsat_1_v5_gn_8_143241 Lactuca sativa HOM05D004238 ORTHO05D004934 9.3e-101 370.9 377 54.1
arahy.Tifrunner.gnm1.ann1.KCMD1F Arachis hypogaea HOM05D004238 ORTHO05D004934 1.6e-100 370.2 368 55.4
VMungo0251G1679 Vigna mungo HOM05D004238 ORTHO05D004934 1.6e-100 370.2 368 55.7
Aqoxy3G00204 Aquilegia oxysepala HOM05D004238 ORTHO05D004934 2.1e-100 369.8 368 55.4
Phvul.002G182700 Phaseolus vulgaris HOM05D004238 ORTHO05D004934 4.6e-100 368.6 368 55.4
MBI09_g25158_MAGBIO Magnolia biondii HOM05D004238 ORTHO05D004934 6.0e-100 368.2 368 54.9
Prupe.5G224400 Prunus persica HOM05D004238 ORTHO05D004934 6.0e-100 368.2 368 55.7
Sed0011571 Sechium edule HOM05D004238 ORTHO05D004934 1.3e-99 367.1 368 54.3
arahy.Tifrunner.gnm1.ann1.NC6GJT Arachis hypogaea HOM05D004238 ORTHO05D004934 1.8e-99 366.7 368 54.9
Cpa.g.sc3.467 Carica papaya HOM05D004238 ORTHO05D004934 1.8e-99 366.7 367 54.5
Ca_11587_v3 Cicer arietinum L. HOM05D004238 ORTHO05D004934 2.3e-99 366.3 368 54.6
Migut.I00409 Erythranthe guttata HOM05D004238 ORTHO05D004934 3.0e-99 365.9 368 54.6
HanXRQChr17g0559411 Helianthus annuus HOM05D004238 ORTHO05D004934 3.0e-99 365.9 371 55.5
COL.COLO4_20838 Corchorus olitorius HOM05D004238 ORTHO05D004934 3.9e-99 365.5 368 54.9
Glyma.05G139300 Glycine max HOM05D004238 ORTHO05D004934 6.7e-99 364.8 368 54.1
Peaxi162Scf00683g00158 Petunia axillaris HOM05D004238 ORTHO05D004934 2.5e-98 362.8 368 54.1
Cc04_g06880 Coffea canephora HOM05D004238 ORTHO05D004934 7.4e-98 361.3 368 54.9
Glyma.08G094600 Glycine max HOM05D004238 ORTHO05D004934 7.4e-98 361.3 368 54.1
Lalb_Chr13g0293671 Lupinus albus HOM05D004238 ORTHO05D004934 7.4e-98 361.3 368 53.5
Oeu000985.1 Olea europaea HOM05D004238 ORTHO05D004934 2.8e-97 359.4 393 51.9
Sc04g0003400 Simmondsia chinensis HOM05D004238 ORTHO05D004934 1.2e-95 354.0 368 53.8
Aa31LG8G5120 Aethionema arabicum HOM05D004238 ORTHO05D004934 2.6e-95 352.8 368 51.1
FAN04G1535 Fragaria x ananassa HOM05D004238 ORTHO05D004934 4.5e-95 352.1 368 53.8
MSTRG.11313 Avicennia marina HOM05D004238 ORTHO05D004934 4.9e-94 348.6 370 52.7
Carub.0003s1804 Capsella rubella HOM05D004238 ORTHO05D004934 4.9e-94 348.6 367 50.7
Thhalv10020846m.g Eutrema salsugineum HOM05D004238 ORTHO05D004934 6.4e-94 348.2 367 51.8
HPP92_008849 Vanilla planifolia HOM05D004238 ORTHO05D004934 2.4e-93 346.3 368 52.2
BraA05t21977Z Brassica rapa HOM05D004238 ORTHO05D004934 6.0e-92 341.7 363 51.2
A05p31380 Brassica napus HOM05D004238 ORTHO05D004934 1.3e-91 340.5 363 50.4
THA.LOC104820382 Tarenaya hassleriana HOM05D004238 ORTHO05D004934 1.3e-91 340.5 368 51.9
C05p47680 Brassica napus HOM05D004238 ORTHO05D004934 1.8e-91 340.1 363 51.2
FvH4_5g16670 Fragaria vesca HOM05D004238 ORTHO05D004934 3.9e-91 339.0 345 55.4
BolC5t33477H Brassica oleracea HOM05D004238 ORTHO05D004934 6.7e-91 338.2 363 50.7
TAR426G0005 Trochodendron aralioides HOM05D004238 ORTHO05D004934 6.7e-91 338.2 346 54.9
Os01g0138900 Oryza sativa ssp. japonica HOM05D004238 ORTHO05D004934 8.7e-91 337.8 366 51.9
Gohir.D07G071400 Gossypium hirsutum HOM05D004238 ORTHO05D004934 1.9e-90 336.7 345 53.6
AT3G18270 Arabidopsis thaliana HOM05D004238 ORTHO05D004934 2.5e-90 336.3 367 49.0
AL3G31500 Arabidopsis lyrata HOM05D004238 ORTHO05D004934 4.3e-90 335.5 367 48.8
ATR0807G117 Amborella trichopoda HOM05D004238 ORTHO05D004934 9.6e-90 334.3 365 52.1
DCAR_011373 Daucus carota HOM05D004238 ORTHO05D004934 8.2e-89 331.3 368 49.7
Dinv34796 Davidia involucrata HOM05D004238 ORTHO05D004934 8.2e-89 331.3 366 50.8
PSO478G0260 Papaver somniferum HOM05D004238 ORTHO05D004934 1.8e-88 330.1 345 53.6
CiPaw.15G135000 Carya illinoinensis HOM05D004238 ORTHO05D004934 4.0e-88 328.9 296 59.5
Thhalv10022164m.g Eutrema salsugineum HOM05D004238 ORTHO05D004934 5.3e-88 328.6 344 52.9
MD06G1220000 Malus domestica HOM05D004238 ORTHO05D004934 1.5e-87 327.0 366 52.5
DCAR_011370 Daucus carota HOM05D004238 ORTHO05D004934 1.3e-86 323.9 311 56.3
Dinv12220 Davidia involucrata HOM05D004238 ORTHO05D004934 2.9e-86 322.8 333 53.8
Rhsim08G0130500 Rhododendron simsii HOM05D004238 ORTHO05D004934 3.8e-86 322.4 378 49.5
Rhsim08G0130600 Rhododendron simsii HOM05D004238 ORTHO05D004934 3.8e-86 322.4 378 49.5
DCAR_011371 Daucus carota HOM05D004238 ORTHO05D004934 1.8e-83 313.5 347 50.4
Duzib138G0550 Durio zibethinus HOM05D004238 ORTHO05D004934 3.9e-83 312.4 364 48.6
CDE08G0051 Ceratophyllum demersum HOM05D004238 ORTHO05D004934 7.4e-82 308.1 369 47.7
Manes.02G071200 Manihot esculenta HOM05D004238 ORTHO05D004934 1.6e-81 307.0 365 47.1
Atru.chr1.1618 Acer truncatum HOM05D004238 ORTHO05D004934 8.2e-81 304.7 366 46.7
Ciclev10011789m.g Citrus clementina HOM05D004238 ORTHO05D004934 1.1e-80 304.3 363 48.2
Gorai.001G075300 Gossypium raimondii HOM05D004238 ORTHO05D004934 1.4e-80 303.9 326 52.1
Zm00001eb335570 Zea mays HOM05D004238 ORTHO05D004934 2.9e-78 296.2 224 65.6
CARHR093620 Cardamine hirsuta HOM05D004238 ORTHO05D004934 5.0e-78 295.4 225 62.2
Zm00001eb124820 Zea mays HOM05D004238 ORTHO05D004934 1.4e-77 293.9 224 65.2
COL.COLO4_09370 Corchorus olitorius HOM05D004238 ORTHO05D004934 1.2e-76 290.8 365 45.5
Sp3g16390 Schrenkiella parvula HOM05D004238 ORTHO05D004934 1.2e-76 290.8 333 49.5
Gohir.D11G171700 Gossypium hirsutum HOM05D004238 ORTHO05D004934 1.6e-76 290.4 364 44.8
Thecc.04G129000 Theobroma cacao HOM05D004238 ORTHO05D004934 1.6e-76 290.4 364 44.5
DCAR_024088 Daucus carota HOM05D004238 ORTHO05D004934 1.8e-75 287.0 324 49.1
Cpa.g.sc170.33 Carica papaya HOM05D004238 ORTHO05D004934 1.1e-74 284.3 371 43.7
Gohir.A11G165600 Gossypium hirsutum HOM05D004238 ORTHO05D004934 1.1e-74 284.3 364 44.2
DCAR_000177 Daucus carota HOM05D004238 ORTHO05D004934 2.2e-73 280.0 218 63.8
DCAR_011366 Daucus carota HOM05D004238 ORTHO05D004934 3.8e-70 269.2 356 44.1
CsaV3_2G033830 Cucumis sativus L. HOM05D004238 ORTHO05D004934 1.4e-69 267.3 365 43.3
CANSAT78G0772 Cannabis sativa HOM05D004238 ORTHO05D004934 4.2e-69 265.8 357 41.5
Mapoly0058s0107 Marchantia polymorpha HOM05D004238 ORTHO05D004934 7.2e-69 265.0 363 44.1
ClCG11G007750 Citrullus lanatus HOM05D004238 ORTHO05D004934 8.8e-67 258.1 376 41.2
Pp3c2_34370 Physcomitrium patens HOM05D004238 ORTHO05D004934 4.4e-66 255.8 362 40.1
SMO146G0383 Selaginella moellendorffii HOM05D004238 ORTHO05D004934 7.4e-66 255.0 347 44.1
HPP92_008863 Vanilla planifolia HOM05D004238 ORTHO05D004934 8.2e-65 251.5 339 46.3
DCAR_011367 Daucus carota HOM05D004238 ORTHO05D004934 2.4e-64 250.0 353 43.9
ECA233G1745 Erigeron canadensis HOM05D004238 ORTHO05D004934 1.9e-61 240.4 366 42.3
Potri.015G044400 Populus trichocarpa HOM05D004238 ORTHO05D004934 2.1e-60 236.9 280 50.7
Gohir.A07G066800 Gossypium hirsutum HOM05D004238 ORTHO05D004934 2.2e-54 216.9 262 47.3
SMO146G0146 Selaginella moellendorffii HOM05D004238 ORTHO05D004934 1.2e-50 204.5 350 39.1
Nn2g15201 Nelumbo nucifera HOM05D004238 ORTHO05D004934 2.7e-44 183.3 164 61.0
Sabra15G0040700 Salix brachista HOM05D004238 ORTHO05D004934 1.7e-41 174.1 141 61.7
TPR.G26740 Trifolium pratense HOM05D004238 ORTHO05D004934 1.6e-39 167.5 110 73.6
Sed0014968 Sechium edule HOM05D004238 ORTHO05D004934 2.8e-36 156.8 297 35.7
DCAR_000092 Daucus carota HOM05D004238 ORTHO05D004934 9.8e-34 148.3 109 67.0
Atru.chr12.656 Acer truncatum HOM05D004238 ORTHO05D004934 4.1e-32 142.9 115 61.7
Atru.chr12.683 Acer truncatum HOM05D004238 ORTHO05D004934 3.5e-31 139.8 111 61.3
PRCOL_00000826 Prasinoderma coloniale HOM05D004238 ORTHO05D004934 1.5e-29 134.4 208 38.0
DCAR_011376 Daucus carota HOM05D004238 ORTHO05D004934 7.3e-29 132.1 118 55.9
Duzib205G0622 Durio zibethinus HOM05D004238 ORTHO05D004934 3.5e-23 113.2 148 45.9
Nn4g22335 Nelumbo nucifera HOM05D004238 ORTHO05D004934 1.7e-17 94.4 70 65.7
Zm00001eb084840 Zea mays HOM05D004238 ORTHO05D004934 1.1e-16 91.7 71 62.0
Lalb_Chr00c06g0404671 Lupinus albus HOM05D004238 ORTHO05D004934 5.4e-16 89.4 106 48.1
arahy.Tifrunner.gnm1.ann1.78LW43 Arachis hypogaea HOM05D004238 ORTHO05D004934 7.0e-16 89.0 106 50.0
Psat0s2250g0040 Pisum sativum HOM05D005720 ORTHO05D006984 7.0e-16 89.0 126 46.0
arahy.Tifrunner.gnm1.ann1.8NU3PL Arachis hypogaea HOM05D004238 ORTHO05D004934 2.1e-15 87.4 106 49.1
TAR374G1013 Trochodendron aralioides HOM05D001418 ORTHO05D002038 3.9e-14 83.2 61 63.9
TAR371G0419 Trochodendron aralioides HOM05D004238 ORTHO05D004934 4.3e-13 79.7 105 44.8
Solyc08g045760.1 Solanum lycopersicum HOM05D004238 ORTHO05D004934 8.9e-11 72.0 66 51.5
Pp3s30_460 Physcomitrium patens HOM05D019034 ORTHO05D004934 3.4e-10 70.1 205 26.8
arahy.Tifrunner.gnm1.ann1.K93WBA Arachis hypogaea HOM05D004238 ORTHO05D004934 2.2e-09 67.4 93 46.2
Dinv00811 Davidia involucrata HOM05D004238 ORTHO05D004934 2.2e-09 67.4 58 55.2
AagrBONN_evm.TU.Sc2ySwM_117.3507 Anthoceros agrestis HOM05D004238 ORTHO05D004934 6.0e-07 59.3 99 39.4


User provided reference genes

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