Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B00718 Eucalyptus grandis HOM05D006108 ORTHO05D007605 4.5e-58 227.6 110 100.0
Thecc.03G033400 Theobroma cacao HOM05D006108 ORTHO05D007605 2.3e-30 135.6 106 63.2
GSVIVG01008271001 Vitis vinifera HOM05D006108 ORTHO05D007605 5.2e-30 134.4 81 77.8
Atru.chr9.818 Acer truncatum HOM05D006108 ORTHO05D007605 1.3e-28 129.8 75 78.7
Dinv09807 Davidia involucrata HOM05D006108 ORTHO05D007605 3.7e-28 128.3 76 80.3
Gohir.A09G177600 Gossypium hirsutum HOM05D006108 ORTHO05D007605 1.1e-27 126.7 81 72.8
Gohir.D09G173100 Gossypium hirsutum HOM05D006108 ORTHO05D007605 1.1e-27 126.7 81 72.8
Gorai.006G195000 Gossypium raimondii HOM05D006108 ORTHO05D007605 1.1e-27 126.7 81 72.8
Psat6g222560 Pisum sativum HOM05D006108 ORTHO05D007605 1.9e-27 125.9 76 73.7
FAN13G1808 Fragaria x ananassa HOM05D006108 ORTHO05D007605 2.4e-27 125.6 76 76.3
FAN18G0723 Fragaria x ananassa HOM05D006108 ORTHO05D007605 2.4e-27 125.6 76 76.3
FAN18G1336 Fragaria x ananassa HOM05D006108 ORTHO05D007605 2.4e-27 125.6 76 76.3
RcHm_v2.0_Chr7g0185241 Rosa chinensis HOM05D006108 ORTHO05D007605 2.4e-27 125.6 76 76.3
Lj2g0017619 Lotus japonicus HOM05D006108 ORTHO05D007605 5.4e-27 124.4 83 67.5
Duzib084G1067 Durio zibethinus HOM05D006108 ORTHO05D007605 7.1e-27 124.0 81 72.8
Glyma.07G090500 Glycine max HOM05D006108 ORTHO05D007605 9.2e-27 123.6 106 57.5
TPR.G35239 Trifolium pratense HOM05D006108 ORTHO05D007605 1.2e-26 123.2 84 69.0
FAN08G0393 Fragaria x ananassa HOM05D006108 ORTHO05D007605 1.6e-26 122.9 76 75.0
Manes.05G140027 Manihot esculenta HOM05D006108 ORTHO05D007605 1.6e-26 122.9 73 76.7
MD06G1214900 Malus domestica HOM05D006108 ORTHO05D007605 2.7e-26 122.1 95 61.1
FvH4_5g12320 Fragaria vesca HOM05D006108 ORTHO05D007605 3.5e-26 121.7 76 73.7
Glyma.09G185400 Glycine max HOM05D006108 ORTHO05D007605 4.6e-26 121.3 84 66.7
Gohir.A09G047400 Gossypium hirsutum HOM05D006108 ORTHO05D007605 4.6e-26 121.3 86 68.6
Gorai.006G061500 Gossypium raimondii HOM05D006108 ORTHO05D007605 4.6e-26 121.3 86 68.6
Nn4g23806 Nelumbo nucifera HOM05D006108 ORTHO05D007605 4.6e-26 121.3 74 74.3
Actinidia35084 Actinidia chinensis HOM05D006108 ORTHO05D007605 6.0e-26 120.9 74 75.7
Cfa019791 Carpinus fangiana HOM05D006108 ORTHO05D007605 7.8e-26 120.6 79 70.9
CsaV3_1G006560 Cucumis sativus L. HOM05D006108 ORTHO05D007605 7.8e-26 120.6 99 62.6
Nn3g17803 Nelumbo nucifera HOM05D006108 ORTHO05D007605 7.8e-26 120.6 82 67.1
Gohir.D09G048600 Gossypium hirsutum HOM05D006108 ORTHO05D007605 1.0e-25 120.2 86 68.6
Prupe.5G220300 Prunus persica HOM05D006108 ORTHO05D007605 2.3e-25 119.0 105 60.0
Sed0021850 Sechium edule HOM05D006108 ORTHO05D007605 2.3e-25 119.0 84 69.0
VMungo0464G0155 Vigna mungo HOM05D006108 ORTHO05D007605 3.9e-25 118.2 101 55.4
Ciclev10022919m.g Citrus clementina HOM05D006108 ORTHO05D007605 5.1e-25 117.9 104 58.7
MD14G1225800 Malus domestica HOM05D006108 ORTHO05D007605 5.1e-25 117.9 88 62.5
Rhsim12G0143800 Rhododendron simsii HOM05D006108 ORTHO05D007605 8.6e-25 117.1 75 72.0
Phvul.004G158700 Phaseolus vulgaris HOM05D006108 ORTHO05D007605 1.5e-24 116.3 81 61.7
CDE05G0497 Ceratophyllum demersum HOM05D006108 ORTHO05D007605 3.3e-24 115.2 76 72.4
Prupe.1G308800 Prunus persica HOM05D006108 ORTHO05D007605 3.3e-24 115.2 84 64.3
PSO017G5628 Papaver somniferum HOM05D006108 ORTHO05D007605 7.3e-24 114.0 92 57.6
Sopen03g038460 Solanum pennellii HOM05D006108 ORTHO05D007605 9.5e-24 113.6 84 65.5
Nitab4.5_0001599g0060 Nicotiana tabacum HOM05D006108 ORTHO05D007605 2.1e-23 112.5 81 66.7
Nitab4.5_0004412g0100 Nicotiana tabacum HOM05D006108 ORTHO05D007605 2.1e-23 112.5 81 66.7
TAR371G1266 Trochodendron aralioides HOM05D006108 ORTHO05D007605 2.1e-23 112.5 77 66.2
CiPaw.15G083500 Carya illinoinensis HOM05D006108 ORTHO05D007605 3.6e-23 111.7 89 56.2
CiPaw.15G129300 Carya illinoinensis HOM05D006108 ORTHO05D007605 3.6e-23 111.7 75 68.0
Potri.008G119200 Populus trichocarpa HOM05D006108 ORTHO05D007605 1.8e-22 109.4 81 63.0
RcHm_v2.0_Chr4g0435471 Rosa chinensis HOM05D006108 ORTHO05D007605 1.8e-22 109.4 72 66.7
COL.COLO4_07905 Corchorus olitorius HOM05D001580 ORTHO05D001517 3.1e-22 108.6 83 60.2
Duzib248G0641 Durio zibethinus HOM05D006108 ORTHO05D007605 3.1e-22 108.6 77 61.0
MD13G1043700 Malus domestica HOM05D006108 ORTHO05D007605 3.1e-22 108.6 84 58.3
PGSC0003DMG402005714 Solanum tuberosum HOM05D006108 ORTHO05D007605 4.0e-22 108.2 78 66.7
arahy.Tifrunner.gnm1.ann1.1V8BDZ Arachis hypogaea HOM05D006108 ORTHO05D007605 6.8e-22 107.5 76 67.1
arahy.Tifrunner.gnm1.ann1.L19XPP Arachis hypogaea HOM05D006108 ORTHO05D007605 6.8e-22 107.5 76 67.1
Gorai.008G184200 Gossypium raimondii HOM05D006108 ORTHO05D007605 1.2e-21 106.7 84 58.3
Ciclev10033455m.g Citrus clementina HOM05D006108 ORTHO05D007605 1.5e-21 106.3 76 67.1
TWI31G1391 Tripterygium wilfordii HOM05D006108 ORTHO05D007605 3.4e-21 105.1 78 60.3
FAN07G1587 Fragaria x ananassa HOM05D006108 ORTHO05D007605 5.8e-21 104.4 72 62.5
CSS0049683 Camellia sinensis var. sinensis HOM05D006108 ORTHO05D007605 9.9e-21 103.6 76 60.5
Lsat_1_v5_gn_8_39200 Lactuca sativa HOM05D006108 ORTHO05D007605 9.9e-21 103.6 76 61.8
HanXRQChr02g0058721 Helianthus annuus HOM05D006108 ORTHO05D007605 1.3e-20 103.2 85 58.8
Sabra08G0090500 Salix brachista HOM05D006108 ORTHO05D007605 1.3e-20 103.2 88 56.8
Migut.L01077 Erythranthe guttata HOM05D006108 ORTHO05D007605 1.7e-20 102.8 82 58.5
FAN22G0059 Fragaria x ananassa HOM05D006108 ORTHO05D007605 1.7e-20 102.8 71 63.4
TWI79G0681 Tripterygium wilfordii HOM05D006108 ORTHO05D007605 1.7e-20 102.8 78 60.3
Medtr5g055190 Medicago truncatula HOM05D006108 ORTHO05D007605 2.9e-20 102.1 79 57.0
Lj2g0013090 Lotus japonicus HOM05D006108 ORTHO05D007605 3.8e-20 101.7 83 54.2
TPR.G38355 Trifolium pratense HOM05D006108 ORTHO05D007605 3.8e-20 101.7 81 56.8
Glyma.01G082600 Glycine max HOM05D006108 ORTHO05D007605 4.9e-20 101.3 85 55.3
Phvul.003G034700 Phaseolus vulgaris HOM05D006108 ORTHO05D007605 4.9e-20 101.3 83 55.4
QL10p025064 Quercus lobata HOM05D006108 ORTHO05D007605 4.9e-20 101.3 75 62.7
Manes.14G100500 Manihot esculenta HOM05D006108 ORTHO05D007605 1.1e-19 100.1 81 54.3
Dinv04481 Davidia involucrata HOM05D001580 ORTHO05D001517 1.4e-19 99.8 84 56.0
Oeu008040.1 Olea europaea HOM05D006108 ORTHO05D007605 1.4e-19 99.8 71 60.6
Os09g0408550 Oryza sativa ssp. japonica HOM05D006108 ORTHO05D007605 1.9e-19 99.4 68 67.6
Oeu041896.1 Olea europaea HOM05D006108 ORTHO05D007605 3.2e-19 98.6 73 60.3
HPP92_026959 Vanilla planifolia HOM05D006108 ORTHO05D007605 3.2e-19 98.6 83 59.0
AL5G14490 Arabidopsis lyrata HOM05D006108 ORTHO05D007605 4.1e-19 98.2 82 50.0
Gohir.A12G168100 Gossypium hirsutum HOM05D006108 ORTHO05D007605 4.1e-19 98.2 77 59.7
Sp2g15090 Schrenkiella parvula HOM05D006108 ORTHO05D007605 4.1e-19 98.2 79 53.2
Lalb_Chr10g0099931 Lupinus albus HOM05D006108 ORTHO05D007605 5.4e-19 97.8 76 56.6
Manes.06G070100 Manihot esculenta HOM05D006108 ORTHO05D007605 5.4e-19 97.8 74 54.1
Carub.0005s0368 Capsella rubella HOM05D006108 ORTHO05D007605 9.2e-19 97.1 92 46.7
Eucgr.B03028 Eucalyptus grandis HOM05D006108 ORTHO05D007605 9.2e-19 97.1 103 46.6
Gohir.D12G171700 Gossypium hirsutum HOM05D006108 ORTHO05D007605 9.2e-19 97.1 77 59.7
A02p34100 Brassica napus HOM05D006108 ORTHO05D007605 1.2e-18 96.7 93 49.5
BcaC03g17291 Brassica carinata HOM05D006108 ORTHO05D007605 1.6e-18 96.3 91 49.5
BolC2t11319H Brassica oleracea HOM05D006108 ORTHO05D007605 1.6e-18 96.3 91 49.5
Psat2g097920 Pisum sativum HOM05D006108 ORTHO05D007605 1.6e-18 96.3 77 58.4
QL01p043861 Quercus lobata HOM05D006108 ORTHO05D007605 1.6e-18 96.3 68 61.8
Cc11_g10300 Coffea canephora HOM05D006108 ORTHO05D007605 2.1e-18 95.9 95 49.5
DCAR_026728 Daucus carota HOM05D006108 ORTHO05D007605 2.7e-18 95.5 77 58.4
MD16G1044500 Malus domestica HOM05D006108 ORTHO05D007605 2.7e-18 95.5 77 57.1
FAN12G0874 Fragaria x ananassa HOM05D006108 ORTHO05D007605 4.6e-18 94.7 78 56.4
Zm00001eb099300 Zea mays HOM05D006108 ORTHO05D007605 4.6e-18 94.7 86 57.0
Sed0000256 Sechium edule HOM05D006108 ORTHO05D007605 6.0e-18 94.4 73 53.4
THA.LOC104824033 Tarenaya hassleriana HOM05D006108 ORTHO05D007605 6.0e-18 94.4 80 55.0
BcaB07g30252 Brassica carinata HOM05D006108 ORTHO05D007605 7.8e-18 94.0 73 56.2
PGR102G2516 Punica granatum HOM05D006108 ORTHO05D007605 7.8e-18 94.0 84 52.4
Thhalv10005176m.g Eutrema salsugineum HOM05D006108 ORTHO05D007605 1.0e-17 93.6 80 52.5
Sc14g0007540 Simmondsia chinensis HOM05D006108 ORTHO05D007605 1.0e-17 93.6 70 61.4
A06p42440 Brassica napus HOM05D006108 ORTHO05D007605 1.3e-17 93.2 75 52.0
BraA06t27159Z Brassica rapa HOM05D006108 ORTHO05D007605 1.3e-17 93.2 75 52.0
BraA02t08427Z Brassica rapa HOM05D006108 ORTHO05D007605 2.3e-17 92.4 90 48.9
CARHR146800 Cardamine hirsuta HOM05D006108 ORTHO05D007605 2.3e-17 92.4 82 51.2
AT3G25855 Arabidopsis thaliana HOM05D006108 ORTHO05D007605 3.0e-17 92.0 83 48.2
BcaC06g31111 Brassica carinata HOM05D006108 ORTHO05D007605 3.0e-17 92.0 89 43.8
C02p52370 Brassica napus HOM05D006108 ORTHO05D007605 3.0e-17 92.0 88 48.9
BcaC06g33947 Brassica carinata HOM05D006108 ORTHO05D007605 1.1e-16 90.1 75 50.7
C07p34870 Brassica napus HOM05D006108 ORTHO05D007605 1.5e-16 89.7 89 46.1
BolC7t44019H Brassica oleracea HOM05D006108 ORTHO05D007605 2.5e-16 89.0 89 46.1
CsaV3_6G003400 Cucumis sativus L. HOM05D006108 ORTHO05D007605 1.2e-15 86.7 73 49.3
Nitab4.5_0003285g0040 Nicotiana tabacum HOM05D006108 ORTHO05D007605 3.1e-14 82.0 76 52.6
CAN.G388.38 Capsicum annuum HOM05D006108 ORTHO05D007605 4.0e-14 81.6 79 49.4
Peaxi162Scf00015g00844 Petunia axillaris HOM05D006108 ORTHO05D007605 9.0e-14 80.5 85 54.1
Sopen05g012490 Solanum pennellii HOM05D006108 ORTHO05D007605 1.2e-13 80.1 74 48.6
Cpa.g.sc1.185 Carica papaya HOM05D006108 ORTHO05D007605 2.0e-13 79.3 64 56.2
ClCG04G011190 Citrullus lanatus HOM05D006108 ORTHO05D007605 2.0e-13 79.3 92 50.0
Nitab4.5_0001914g0010 Nicotiana tabacum HOM05D006108 ORTHO05D007605 3.4e-13 78.6 100 39.0
ECA233G5877 Erigeron canadensis HOM05D006108 ORTHO05D007605 2.4e-11 72.4 61 59.0
CAN.G438.131 Capsicum annuum HOM05D006108 ORTHO05D007605 2.1e-10 69.3 53 64.2
FAN04G0077 Fragaria x ananassa HOM05D006108 ORTHO05D007605 2.1e-10 69.3 56 64.3
arahy.Tifrunner.gnm1.ann1.384K0G Arachis hypogaea HOM05D006108 ORTHO05D007605 3.9e-09 65.1 62 54.8
SEGI_37086 Sequoiadendron giganteum HOM05D000262 ORTHO05D000300 2.5e-08 62.4 88 39.8
TWI15G1195 Tripterygium wilfordii HOM05D006108 ORTHO05D007605 3.3e-08 62.0 49 61.2
ClCG08G005220 Citrullus lanatus HOM05D006108 ORTHO05D007605 2.1e-07 59.3 99 38.4
Rhsim09G0109500 Rhododendron simsii HOM05D006290 ORTHO05D007734 2.8e-07 58.9 72 43.1
Hund05757 Selenicereus undatus HOM05D006108 ORTHO05D007605 3.6e-07 58.5 61 47.5
Sed0027931 Sechium edule HOM05D006108 ORTHO05D007605 4.8e-07 58.2 47 53.2
FvH4_3g29750 Fragaria vesca HOM05D009285 ORTHO05D009865 5.3e-06 54.7 75 36.0
ATR0624G014 Amborella trichopoda HOM05D001797 ORTHO05D001650 6.9e-06 54.3 82 29.3
TAR629G1572 Trochodendron aralioides HOM05D000473 ORTHO05D006020 9.0e-06 53.9 73 34.2


User provided reference genes

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