Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B00441 Eucalyptus grandis HOM05D005535 ORTHO05D006753 5.3e-177 624.4 348 100.0
PGR083G2381 Punica granatum HOM05D005535 ORTHO05D006753 9.8e-91 337.8 352 59.9
Dinv38677 Davidia involucrata HOM05D005535 ORTHO05D006753 2.2e-90 336.7 353 59.2
QL10p015851 Quercus lobata HOM05D005535 ORTHO05D006753 1.5e-86 323.9 362 57.7
Cfa018977 Carpinus fangiana HOM05D005535 ORTHO05D006753 4.3e-86 322.4 360 57.8
Ciclev10020848m.g Citrus clementina HOM05D005535 ORTHO05D006753 1.2e-85 320.9 354 58.2
Duzib205G0302 Durio zibethinus HOM05D005535 ORTHO05D006753 3.1e-84 316.2 354 56.2
Atru.chr9.2302 Acer truncatum HOM05D005535 ORTHO05D006753 5.2e-84 315.5 331 59.5
CSS0007804 Camellia sinensis var. sinensis HOM05D005535 ORTHO05D006753 6.8e-84 315.1 359 56.8
TAR629G1161 Trochodendron aralioides HOM05D005535 ORTHO05D006753 6.8e-84 315.1 339 55.8
Duzib084G1387 Durio zibethinus HOM05D005535 ORTHO05D006753 7.6e-83 311.6 352 57.1
Actinidia37646 Actinidia chinensis HOM05D005535 ORTHO05D006753 1.7e-82 310.5 361 54.8
Thecc.03G081300 Theobroma cacao HOM05D005535 ORTHO05D006753 2.2e-82 310.1 356 56.5
Dinv19929 Davidia involucrata HOM05D005535 ORTHO05D006753 4.9e-82 308.9 300 61.7
GSVIVG01008044001 Vitis vinifera HOM05D005535 ORTHO05D006753 3.2e-81 306.2 354 55.4
Haze_07363 Corylus avellana HOM05D005535 ORTHO05D006753 5.4e-81 305.4 360 56.7
Actinidia04914 Actinidia chinensis HOM05D005535 ORTHO05D006753 1.6e-80 303.9 349 55.6
Lj9A460T58 Lonicera japonica HOM05D005535 ORTHO05D006753 1.7e-79 300.4 351 54.7
CiPaw.12G015700 Carya illinoinensis HOM05D005535 ORTHO05D006753 6.6e-79 298.5 363 53.7
CSS0007998 Camellia sinensis var. sinensis HOM05D005535 ORTHO05D006753 1.1e-78 297.7 330 56.4
Rhsim08G0158400 Rhododendron simsii HOM05D005535 ORTHO05D006753 1.5e-78 297.4 361 54.3
Rhsim12G0158200 Rhododendron simsii HOM05D005535 ORTHO05D006753 1.9e-78 297.0 354 55.6
vmacro16564 Vaccinium macrocarpon HOM05D005535 ORTHO05D006753 1.9e-78 297.0 360 53.6
Manes.06G095400 Manihot esculenta HOM05D005535 ORTHO05D006753 6.2e-77 292.0 355 56.1
Actinidia19054 Actinidia chinensis HOM05D005535 ORTHO05D006753 1.4e-76 290.8 352 53.7
CANSAT80G1786 Cannabis sativa HOM05D005535 ORTHO05D006753 1.4e-76 290.8 355 53.2
Gohir.D12G178800 Gossypium hirsutum HOM05D005535 ORTHO05D006753 6.8e-76 288.5 359 55.7
RcHm_v2.0_Chr7g0180761 Rosa chinensis HOM05D005535 ORTHO05D006753 6.8e-76 288.5 361 54.6
Hma1.2p1_0104F.1_g050150 Hydrangea macrophylla HOM05D005535 ORTHO05D006753 1.5e-75 287.3 372 53.2
TAR371G0260 Trochodendron aralioides HOM05D005535 ORTHO05D006753 2.0e-75 287.0 350 53.4
Hma1.2p1_1617F.1_g293810 Hydrangea macrophylla HOM05D005535 ORTHO05D006753 7.6e-75 285.0 359 51.8
Actinidia34981 Actinidia chinensis HOM05D005535 ORTHO05D006753 4.9e-74 282.3 362 53.3
MSTRG.11394 Avicennia marina HOM05D005535 ORTHO05D006753 4.9e-74 282.3 354 53.1
FAN13G1299 Fragaria x ananassa HOM05D005535 ORTHO05D006753 4.9e-74 282.3 364 53.3
FvH4_5g15300 Fragaria vesca HOM05D005535 ORTHO05D006753 1.1e-73 281.2 362 53.0
Cc04_g15390 Coffea canephora HOM05D005535 ORTHO05D006753 3.2e-73 279.6 358 53.1
Gorai.008G191600 Gossypium raimondii HOM05D005535 ORTHO05D006753 3.2e-73 279.6 363 54.0
FAN18G1286 Fragaria x ananassa HOM05D005535 ORTHO05D006753 2.1e-72 276.9 357 53.2
Nitab4.5_0004785g0010 Nicotiana tabacum HOM05D005535 ORTHO05D006753 2.1e-72 276.9 355 51.8
AUR62021726 Chenopodium quinoa HOM05D005535 ORTHO05D006753 6.0e-72 275.4 354 52.5
COL.COLO4_14041 Corchorus olitorius HOM05D005535 ORTHO05D006753 1.0e-71 274.6 362 52.2
Migut.I00138 Erythranthe guttata HOM05D005535 ORTHO05D006753 1.7e-71 273.9 353 53.0
Aqoxy3G00718 Aquilegia oxysepala HOM05D005535 ORTHO05D006753 5.1e-71 272.3 371 51.5
Cpa.g.sc17.224 Carica papaya HOM05D005535 ORTHO05D006753 1.1e-70 271.2 333 54.1
Prupe.5G188200 Prunus persica HOM05D005535 ORTHO05D006753 1.1e-70 271.2 347 54.5
Hund09363 Selenicereus undatus HOM05D005535 ORTHO05D006753 1.1e-70 271.2 359 50.4
Gohir.A12G175600 Gossypium hirsutum HOM05D005535 ORTHO05D006753 1.9e-70 270.4 359 53.2
FAN08G2745 Fragaria x ananassa HOM05D005535 ORTHO05D006753 4.3e-70 269.2 355 53.5
Sed0009946 Sechium edule HOM05D005535 ORTHO05D006753 9.6e-70 268.1 358 52.5
Nitab4.5_0000785g0140 Nicotiana tabacum HOM05D005535 ORTHO05D006753 1.3e-69 267.7 349 51.0
vmacro17524 Vaccinium macrocarpon HOM05D005535 ORTHO05D006753 2.8e-69 266.5 356 50.3
Nitab4.5_0000269g0110 Nicotiana tabacum HOM05D005535 ORTHO05D006753 4.8e-69 265.8 336 50.9
Nitab4.5_0004931g0020 Nicotiana tabacum HOM05D005535 ORTHO05D006753 3.1e-68 263.1 356 48.6
Nn3g17153 Nelumbo nucifera HOM05D005535 ORTHO05D006753 2.0e-67 260.4 350 49.4
AUR62008371 Chenopodium quinoa HOM05D005535 ORTHO05D006753 2.6e-67 260.0 348 51.4
FAN04G1197 Fragaria x ananassa HOM05D005535 ORTHO05D006753 1.7e-66 257.3 352 52.0
MELO3C017158.2 Cucumis melo HOM05D005535 ORTHO05D006753 2.9e-66 256.5 359 50.4
ClCG06G016340 Citrullus lanatus HOM05D005535 ORTHO05D006753 3.8e-66 256.1 357 51.5
Lj5A114T27 Lonicera japonica HOM05D005535 ORTHO05D006753 1.1e-65 254.6 306 53.6
TWI60G0583 Tripterygium wilfordii HOM05D005535 ORTHO05D006753 1.4e-65 254.2 269 59.1
EL10Ac5g10956 Beta vulgaris HOM05D005535 ORTHO05D006753 3.2e-65 253.1 352 50.0
Glyma.04G173200 Glycine max HOM05D005535 ORTHO05D006753 7.1e-65 251.9 354 49.2
MD06G1189400 Malus domestica HOM05D005535 ORTHO05D006753 2.1e-64 250.4 330 52.4
PGSC0003DMG401018143 Solanum tuberosum HOM05D005535 ORTHO05D006753 2.1e-64 250.4 361 47.9
SalBow5G2281 Salvia bowleyana HOM05D005535 ORTHO05D006753 2.7e-64 250.0 356 49.4
Ca_21840_v3 Cicer arietinum L. HOM05D005535 ORTHO05D006753 3.5e-64 249.6 369 49.6
Lj1g0015301 Lotus japonicus HOM05D005535 ORTHO05D006753 6.0e-64 248.8 378 47.1
Lj4g0008602 Lotus japonicus HOM05D005535 ORTHO05D006753 7.9e-64 248.4 330 51.2
SalBow5G0107 Salvia bowleyana HOM05D005535 ORTHO05D006753 7.9e-64 248.4 357 49.6
CsaV3_1G002190 Cucumis sativus L. HOM05D005535 ORTHO05D006753 1.0e-63 248.1 358 50.0
arahy.Tifrunner.gnm1.ann1.WGP01G Arachis hypogaea HOM05D005535 ORTHO05D006753 3.0e-63 246.5 364 49.2
Sabra15G0089300 Salix brachista HOM05D005535 ORTHO05D006753 3.9e-63 246.1 360 50.0
Peaxi162Scf00009g00219 Petunia axillaris HOM05D005535 ORTHO05D006753 5.1e-63 245.7 343 48.1
HanXRQChr09g0271071 Helianthus annuus HOM05D005535 ORTHO05D006753 1.1e-62 244.6 353 47.9
Sopen06g027240 Solanum pennellii HOM05D005535 ORTHO05D006753 1.1e-62 244.6 367 48.5
CAN.G628.33 Capsicum annuum HOM05D005535 ORTHO05D006753 2.5e-62 243.4 338 49.1
Lalb_Chr12g0196771 Lupinus albus HOM05D005535 ORTHO05D006753 2.5e-62 243.4 365 49.0
Glyma.06G191000 Glycine max HOM05D005535 ORTHO05D006753 3.3e-62 243.0 361 47.9
PSO832G1146 Papaver somniferum HOM05D005535 ORTHO05D006753 4.3e-62 242.7 353 47.3
Solyc06g070970.3 Solanum lycopersicum HOM05D005535 ORTHO05D006753 4.3e-62 242.7 367 48.2
Sopen03g032160 Solanum pennellii HOM05D005535 ORTHO05D006753 5.6e-62 242.3 361 47.9
TPR.G27376 Trifolium pratense HOM05D005535 ORTHO05D006753 7.4e-62 241.9 398 46.0
Glyma.17G098100 Glycine max HOM05D005535 ORTHO05D006753 9.6e-62 241.5 399 47.6
Oeu006178.3 Olea europaea HOM05D005535 ORTHO05D006753 1.3e-61 241.1 352 46.6
Lalb_Chr13g0303381 Lupinus albus HOM05D005535 ORTHO05D006753 4.8e-61 239.2 343 50.4
Peaxi162Scf00013g00129 Petunia axillaris HOM05D005535 ORTHO05D006753 6.2e-61 238.8 315 48.6
arahy.Tifrunner.gnm1.ann1.G5WMYY Arachis hypogaea HOM05D005535 ORTHO05D006753 1.4e-60 237.7 359 47.9
Potri.015G063700 Populus trichocarpa HOM05D005535 ORTHO05D006753 1.8e-60 237.3 353 48.4
MD14G1196400 Malus domestica HOM05D005535 ORTHO05D006753 3.1e-60 236.5 358 49.7
Oeu022201.1 Olea europaea HOM05D005535 ORTHO05D006753 3.1e-60 236.5 317 49.8
Medtr4g108100 Medicago truncatula HOM05D005535 ORTHO05D006753 6.9e-60 235.3 383 47.3
Glyma.05G028700 Glycine max HOM05D005535 ORTHO05D006753 9.0e-60 235.0 373 49.1
Ah.02g113290 Amaranthus hybridus HOM05D005535 ORTHO05D006753 4.5e-59 232.6 362 48.1
Solyc03g113090.3 Solanum lycopersicum HOM05D005535 ORTHO05D006753 4.9e-58 229.2 362 46.1
VMungo1309G2126 Vigna mungo HOM05D005535 ORTHO05D006753 4.9e-58 229.2 270 53.0
ECA232G4425 Erigeron canadensis HOM05D005535 ORTHO05D006753 1.1e-57 228.0 355 46.8
MBI01_g12912_MAGBIO Magnolia biondii HOM05D005535 ORTHO05D006753 1.2e-56 224.6 354 46.6
PSO591G0334 Papaver somniferum HOM05D005535 ORTHO05D006753 3.5e-56 223.0 355 45.4
SGA_v2.0_scaffold56G20044 Striga asiatica HOM05D005535 ORTHO05D006753 1.0e-55 221.5 352 48.6
Phvul.009G189600 Phaseolus vulgaris HOM05D005535 ORTHO05D006753 1.3e-55 221.1 366 45.9
VMungo1215G1657 Vigna mungo HOM05D005535 ORTHO05D006753 1.8e-55 220.7 352 46.3
Sc10g0009960 Simmondsia chinensis HOM05D005535 ORTHO05D006753 1.1e-54 218.0 352 46.0
Psat4g052400 Pisum sativum HOM05D005535 ORTHO05D006753 8.1e-53 211.8 348 45.7
ATR1120G167 Amborella trichopoda HOM05D005535 ORTHO05D006753 9.0e-52 208.4 351 42.5
Aqoxy3G03311 Aquilegia oxysepala HOM05D005535 ORTHO05D006753 1.2e-51 208.0 322 45.3
PSO017G0680 Papaver somniferum HOM05D005535 ORTHO05D006753 2.0e-51 207.2 311 47.3
Phvul.003G191800 Phaseolus vulgaris HOM05D005535 ORTHO05D006753 3.4e-51 206.5 368 47.0
PSO478G1818 Papaver somniferum HOM05D005535 ORTHO05D006753 7.6e-51 205.3 283 48.8
Sed0000211 Sechium edule HOM05D005535 ORTHO05D006753 7.6e-51 205.3 360 45.6
SGA_v2.0_scaffold162G37926 Striga asiatica HOM05D005535 ORTHO05D006753 2.1e-48 197.2 318 47.5
PGSC0003DMG400033073 Solanum tuberosum HOM05D005535 ORTHO05D006753 4.1e-44 183.0 368 41.0
HanXRQChr05g0158021 Helianthus annuus HOM05D005535 ORTHO05D006753 1.5e-43 181.0 357 39.5
Os06g0589500 Oryza sativa ssp. japonica HOM05D005535 ORTHO05D006753 3.4e-43 179.9 343 41.4
HPP92_024074 Vanilla planifolia HOM05D005535 ORTHO05D006753 1.3e-42 177.9 340 42.1
THA.LOC104821430 Tarenaya hassleriana HOM05D005535 ORTHO05D006753 8.5e-42 175.3 321 41.7
Thhalv10004313m.g Eutrema salsugineum HOM05D005535 ORTHO05D006753 1.1e-41 174.9 399 36.3
unitig_26.g9639 Utricularia gibba HOM05D005535 ORTHO05D006753 1.4e-41 174.5 332 43.7
Lsat_1_v5_gn_5_19040 Lactuca sativa HOM05D005535 ORTHO05D006753 2.5e-41 173.7 353 39.4
Zm00001eb386190 Zea mays HOM05D005535 ORTHO05D006753 7.2e-41 172.2 337 38.9
Zm00001eb277070 Zea mays HOM05D005535 ORTHO05D006753 1.6e-40 171.0 339 39.8
A06p29250 Brassica napus HOM05D005535 ORTHO05D006753 1.5e-38 164.5 307 42.3
BraA06t25881Z Brassica rapa HOM05D005535 ORTHO05D006753 2.8e-37 160.2 406 35.7
Sp2g25720 Schrenkiella parvula HOM05D005535 ORTHO05D006753 2.8e-37 160.2 318 40.3
BcaC01g02485 Brassica carinata HOM05D005535 ORTHO05D006753 6.3e-37 159.1 398 36.4
C03p64280 Brassica napus HOM05D005535 ORTHO05D006753 1.8e-36 157.5 398 36.2
BolC3t18683H Brassica oleracea HOM05D005535 ORTHO05D006753 1.8e-36 157.5 398 36.2
AT5G62550 Arabidopsis thaliana HOM05D005535 ORTHO05D006753 2.4e-36 157.1 262 44.7
Carub.0008s2322 Capsella rubella HOM05D005535 ORTHO05D006753 9.0e-36 155.2 273 42.9
Aa31LG11G1090 Aethionema arabicum HOM05D005535 ORTHO05D006753 2.9e-34 150.2 365 37.3
AL8G39440 Arabidopsis lyrata HOM05D005535 ORTHO05D006753 3.8e-34 149.8 411 36.3
BcaB02g09657 Brassica carinata HOM05D005535 ORTHO05D006753 6.5e-34 149.1 366 37.4
TWI34G0031 Tripterygium wilfordii HOM05D005535 ORTHO05D006753 4.2e-25 119.8 175 47.4
SEGI_01090 Sequoiadendron giganteum HOM05D005535 ORTHO05D006753 1.0e-18 98.6 421 30.2
Peaxi162Scf00351g00214 Petunia axillaris HOM05D008415 ORTHO05D010601 1.1e-09 68.6 131 32.8
SalBow3G0300 Salvia bowleyana HOM05D008415 ORTHO05D010601 2.1e-08 64.3 89 38.2
MSTRG.18650 Avicennia marina HOM05D008415 ORTHO05D010601 2.7e-08 63.9 169 27.8
PGR119G0199 Punica granatum HOM05D008415 ORTHO05D010601 2.7e-08 63.9 140 32.9
SGA_v2.0_scaffold61G21159 Striga asiatica HOM05D008415 ORTHO05D010601 3.6e-08 63.5 180 31.1
Actinidia03741 Actinidia chinensis HOM05D008415 ORTHO05D010601 6.1e-08 62.8 190 30.0
Sopen11g027940 Solanum pennellii HOM05D008415 ORTHO05D010601 2.3e-07 60.8 164 32.3
arahy.Tifrunner.gnm1.ann1.C7LIDW Arachis hypogaea HOM05D008415 ORTHO05D010601 3.0e-07 60.5 125 32.0
TAR633G1891 Trochodendron aralioides HOM05D008415 ORTHO05D010601 3.0e-07 60.5 160 32.5
arahy.Tifrunner.gnm1.ann1.TY33PY Arachis hypogaea HOM05D008415 ORTHO05D010601 4.0e-07 60.1 125 31.2
Migut.D02196 Erythranthe guttata HOM05D008415 ORTHO05D010601 4.0e-07 60.1 130 33.8
CAN.G631.8 Capsicum annuum HOM05D008415 ORTHO05D010601 5.2e-07 59.7 222 28.4
Hma1.2p1_2585F.1_g324920 Hydrangea macrophylla HOM05D008415 ORTHO05D010601 5.2e-07 59.7 130 31.5
Lj3g0013437 Lotus japonicus HOM05D008415 ORTHO05D010601 5.2e-07 59.7 109 35.8
Hma1.2p1_1931F.1_g307990 Hydrangea macrophylla HOM05D008415 ORTHO05D010601 6.8e-07 59.3 130 31.5
Psat7g223880 Pisum sativum HOM05D008415 ORTHO05D010601 6.8e-07 59.3 113 32.7
QL01p023166 Quercus lobata HOM05D008415 ORTHO05D010601 6.8e-07 59.3 141 32.6
Solyc11g069210.2 Solanum lycopersicum HOM05D008415 ORTHO05D010601 1.2e-06 58.5 209 31.6
GSVIVG01025161001 Vitis vinifera HOM05D008415 ORTHO05D010601 1.5e-06 58.2 198 27.3
Lalb_Chr19g0137361 Lupinus albus HOM05D008415 ORTHO05D010601 2.6e-06 57.4 118 33.1
Glyma.11G154841 Glycine max HOM05D008415 ORTHO05D010601 4.4e-06 56.6 140 32.1
MD01G1041800 Malus domestica HOM05D005535 ORTHO05D006753 4.4e-06 56.6 36 77.8
Phvul.011G073700 Phaseolus vulgaris HOM05D008415 ORTHO05D010601 7.5e-06 55.8 56 42.9
Cc07_g02980 Coffea canephora HOM05D008415 ORTHO05D010601 9.8e-06 55.5 104 33.7
VMungo1127G1728 Vigna mungo HOM05D008415 ORTHO05D010601 9.8e-06 55.5 87 32.2


User provided reference genes

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