Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B00434 Eucalyptus grandis HOM05D006304 ORTHO05D008584 0.0e+00 1588.2 824 100.0
PGR083G1524 Punica granatum HOM05D006304 ORTHO05D008584 5.8e-174 615.5 841 46.8
MD14G1195600 Malus domestica HOM05D006304 ORTHO05D008584 6.2e-168 595.5 854 46.4
Prupe.5G187100 Prunus persica HOM05D006304 ORTHO05D008584 4.4e-166 589.3 846 45.6
Cfa018983 Carpinus fangiana HOM05D006304 ORTHO05D008584 1.6e-163 580.9 946 44.4
CsaV3_1G007890 Cucumis sativus L. HOM05D006304 ORTHO05D008584 2.3e-162 577.0 885 44.1
MELO3C002204.2 Cucumis melo HOM05D006304 ORTHO05D008584 6.2e-160 568.9 891 44.6
GSVIVG01008051001 Vitis vinifera HOM05D006304 ORTHO05D008584 5.8e-158 562.4 829 45.8
MD06G1188800 Malus domestica HOM05D006304 ORTHO05D008584 1.9e-156 557.4 849 45.0
Cpa.g.sc17.206 Carica papaya HOM05D006304 ORTHO05D008584 7.1e-156 555.4 855 45.3
RcHm_v2.0_Chr7g0180671 Rosa chinensis HOM05D006304 ORTHO05D008584 7.1e-156 555.4 852 44.7
arahy.Tifrunner.gnm1.ann1.E16Z9R Arachis hypogaea HOM05D006304 ORTHO05D008584 1.8e-154 550.8 720 48.1
Sed0028137 Sechium edule HOM05D006304 ORTHO05D008584 8.7e-154 548.5 838 45.1
CiPaw.11G039300 Carya illinoinensis HOM05D006304 ORTHO05D008584 1.1e-151 541.6 768 47.1
Duzib205G0644 Durio zibethinus HOM05D006304 ORTHO05D008584 3.1e-151 540.0 736 49.0
FvH4_5g15410 Fragaria vesca HOM05D006304 ORTHO05D008584 3.4e-150 536.6 828 44.1
Gorai.008G191000 Gossypium raimondii HOM05D006304 ORTHO05D008584 4.9e-149 532.7 829 47.4
Lj4g0004911 Lotus japonicus HOM05D006304 ORTHO05D008584 1.1e-148 531.6 420 66.0
VMungo1215G2961 Vigna mungo HOM05D006304 ORTHO05D008584 1.1e-148 531.6 829 44.3
Gohir.D12G178452 Gossypium hirsutum HOM05D006304 ORTHO05D008584 2.5e-148 530.4 750 47.7
Gohir.A12G175370 Gossypium hirsutum HOM05D006304 ORTHO05D008584 3.2e-148 530.0 824 47.1
Sc10g0009990 Simmondsia chinensis HOM05D006304 ORTHO05D008584 3.2e-148 530.0 892 43.7
TWI60G1649 Tripterygium wilfordii HOM05D006304 ORTHO05D008584 4.2e-148 529.6 848 45.0
Rhsim12G0159100 Rhododendron simsii HOM05D006304 ORTHO05D008584 2.3e-146 523.9 898 43.8
Glyma.05G029400 Glycine max HOM05D006304 ORTHO05D008584 3.9e-146 523.1 506 58.1
Ciclev10019215m.g Citrus clementina HOM05D006304 ORTHO05D008584 5.1e-146 522.7 828 43.7
Actinidia34979 Actinidia chinensis HOM05D006304 ORTHO05D008584 4.3e-145 519.6 955 42.1
Haze_07372 Corylus avellana HOM05D006304 ORTHO05D008584 1.6e-144 517.7 936 41.9
Thecc.03G080300 Theobroma cacao HOM05D006304 ORTHO05D008584 1.1e-143 515.0 764 47.9
TAR371G0034 Trochodendron aralioides HOM05D006304 ORTHO05D008584 1.1e-143 515.0 975 39.1
Phvul.003G192300 Phaseolus vulgaris HOM05D006304 ORTHO05D008584 4.0e-143 513.1 637 50.7
CANSAT80G1066 Cannabis sativa HOM05D006304 ORTHO05D008584 1.2e-142 511.5 828 43.4
Glyma.17G097500 Glycine max HOM05D006304 ORTHO05D008584 1.2e-142 511.5 578 52.9
Psat4g053720 Pisum sativum HOM05D006304 ORTHO05D008584 1.3e-141 508.1 501 57.3
Hund09367 Selenicereus undatus HOM05D006304 ORTHO05D008584 1.7e-141 507.7 957 42.1
arahy.Tifrunner.gnm1.ann1.YQHF2A Arachis hypogaea HOM05D006304 ORTHO05D008584 1.4e-140 504.6 808 42.6
Ca_21844_v3 Cicer arietinum L. HOM05D006304 ORTHO05D008584 1.4e-140 504.6 474 58.9
Medtr4g107890 Medicago truncatula HOM05D006304 ORTHO05D008584 4.2e-140 503.1 507 56.8
AUR62021733 Chenopodium quinoa HOM05D006304 ORTHO05D008584 1.6e-139 501.1 925 41.3
TPR.G38415 Trifolium pratense HOM05D006304 ORTHO05D008584 2.7e-139 500.4 509 56.2
ClCG01G014430 Citrullus lanatus HOM05D006304 ORTHO05D008584 4.6e-139 499.6 995 38.8
vmacro16566 Vaccinium macrocarpon HOM05D006304 ORTHO05D008584 4.6e-139 499.6 945 41.6
FAN04G3159 Fragaria x ananassa HOM05D006304 ORTHO05D008584 7.9e-139 498.8 818 42.7
Nitab4.5_0000269g0180 Nicotiana tabacum HOM05D006304 ORTHO05D008584 7.9e-139 498.8 861 42.0
FAN08G3028 Fragaria x ananassa HOM05D006304 ORTHO05D008584 5.1e-138 496.1 815 42.8
Oeu048746.1 Olea europaea HOM05D006304 ORTHO05D008584 5.1e-138 496.1 829 41.5
AUR62008366 Chenopodium quinoa HOM05D006304 ORTHO05D008584 6.7e-138 495.7 923 40.2
TAR629G0077 Trochodendron aralioides HOM05D006304 ORTHO05D008584 1.6e-136 491.1 562 52.5
Nitab4.5_0009895g0010 Nicotiana tabacum HOM05D006304 ORTHO05D008584 2.8e-136 490.3 863 41.8
Sopen06g027340 Solanum pennellii HOM05D006304 ORTHO05D008584 2.8e-136 490.3 891 41.1
Nn3g17140 Nelumbo nucifera HOM05D006304 ORTHO05D008584 1.8e-135 487.6 660 48.3
Cc04_g15450 Coffea canephora HOM05D006304 ORTHO05D008584 5.3e-135 486.1 508 53.3
MBI12_g19403_MAGBIO Magnolia biondii HOM05D006304 ORTHO05D008584 5.3e-135 486.1 598 49.8
Lj5A115T69 Lonicera japonica HOM05D006304 ORTHO05D008584 2.6e-134 483.8 1010 39.4
FAN18G3228 Fragaria x ananassa HOM05D006304 ORTHO05D008584 5.9e-134 482.6 861 40.8
Sabra15G0090300 Salix brachista HOM05D006304 ORTHO05D008584 7.7e-134 482.3 478 57.3
Ah.11g048730 Amaranthus hybridus HOM05D006304 ORTHO05D008584 1.4e-132 478.0 559 53.5
COL.COLO4_05911 Corchorus olitorius HOM05D006304 ORTHO05D008584 1.4e-132 478.0 461 59.2
Migut.I00131 Erythranthe guttata HOM05D006304 ORTHO05D008584 5.5e-132 476.1 837 41.6
Potri.015G064600 Populus trichocarpa HOM05D006304 ORTHO05D008584 9.4e-132 475.3 837 42.8
SalBow5G3794 Salvia bowleyana HOM05D006304 ORTHO05D008584 2.5e-129 467.2 910 39.7
THA.LOC104821457 Tarenaya hassleriana HOM05D006304 ORTHO05D008584 2.5e-129 467.2 829 41.9
CAN.G628.40 Capsicum annuum HOM05D006304 ORTHO05D008584 1.7e-128 464.5 892 40.0
Actinidia19056 Actinidia chinensis HOM05D006304 ORTHO05D008584 8.2e-128 462.2 963 39.7
Manes.06G096000 Manihot esculenta HOM05D006304 ORTHO05D008584 1.8e-127 461.1 824 41.3
SGA_v2.0_scaffold56G20049 Striga asiatica HOM05D006304 ORTHO05D008584 1.8e-127 461.1 847 41.0
ECA247G4106 Erigeron canadensis HOM05D006304 ORTHO05D008584 3.1e-127 460.3 455 56.0
Atru.chr9.2307 Acer truncatum HOM05D006304 ORTHO05D008584 1.4e-124 451.4 768 43.2
Peaxi162Scf00013g00025 Petunia axillaris HOM05D006304 ORTHO05D008584 1.4e-122 444.9 645 45.0
Sp2g25930 Schrenkiella parvula HOM05D006304 ORTHO05D008584 1.8e-122 444.5 823 40.1
Solyc06g071040.4 Solanum lycopersicum HOM05D006304 ORTHO05D008584 1.8e-122 444.5 890 39.3
Aqoxy3G00750 Aquilegia oxysepala HOM05D006304 ORTHO05D008584 1.5e-121 441.4 837 39.4
FAN13G0685 Fragaria x ananassa HOM05D006304 ORTHO05D008584 3.3e-121 440.3 823 40.2
HanXRQChr02g0045271 Helianthus annuus HOM05D006304 ORTHO05D008584 2.2e-120 437.6 494 51.6
CDE06G1311 Ceratophyllum demersum HOM05D006304 ORTHO05D008584 3.7e-120 436.8 511 49.7
Dinv38671 Davidia involucrata HOM05D006304 ORTHO05D008584 6.3e-120 436.0 714 43.6
EL10Ac5g10949 Beta vulgaris HOM05D006304 ORTHO05D008584 2.2e-117 427.6 705 43.4
Thhalv10003777m.g Eutrema salsugineum HOM05D006304 ORTHO05D008584 2.2e-117 427.6 815 39.3
Carub.0008s2349 Capsella rubella HOM05D006304 ORTHO05D008584 4.2e-116 423.3 810 38.6
ATR1120G178 Amborella trichopoda HOM05D006304 ORTHO05D008584 1.2e-115 421.8 446 53.6
DCAR_021535 Daucus carota HOM05D006304 ORTHO05D008584 1.6e-115 421.4 725 41.8
AT5G62760 Arabidopsis thaliana HOM05D006304 ORTHO05D008584 8.8e-114 415.6 808 39.0
Lsat_1_v5_gn_1_10941 Lactuca sativa HOM05D006304 ORTHO05D008584 2.2e-112 411.0 870 37.5
A06p29540 Brassica napus HOM05D006304 ORTHO05D008584 5.9e-110 402.9 407 55.8
SEGI_29067 Sequoiadendron giganteum HOM05D006304 ORTHO05D008584 1.0e-109 402.1 471 50.3
CARHR276550 Cardamine hirsuta HOM05D006304 ORTHO05D008584 3.8e-109 400.2 813 37.6
AL8G39730 Arabidopsis lyrata HOM05D006304 ORTHO05D008584 2.5e-108 397.5 817 38.9
BcaC01g02519 Brassica carinata HOM05D006304 ORTHO05D008584 7.2e-108 396.0 412 54.4
C03p63960 Brassica napus HOM05D006304 ORTHO05D008584 6.1e-107 392.9 413 54.2
Zm00001eb240230 Zea mays HOM05D006304 ORTHO05D008584 3.0e-106 390.6 723 38.9
BraA06t25899Z Brassica rapa HOM05D006304 ORTHO05D008584 4.0e-106 390.2 431 52.7
HPP92_021789 Vanilla planifolia HOM05D006304 ORTHO05D008584 5.2e-106 389.8 789 38.0
Os02g0215000 Oryza sativa ssp. japonica HOM05D006304 ORTHO05D008584 4.8e-104 383.3 830 37.3
BcaB02g09690 Brassica carinata HOM05D006304 ORTHO05D008584 1.4e-103 381.7 809 37.3
unitig_0.g2536 Utricularia gibba HOM05D006304 ORTHO05D008584 1.4e-103 381.7 469 48.6
BolC3t18650H Brassica oleracea HOM05D006304 ORTHO05D008584 4.5e-102 376.7 440 50.9
Lalb_Chr12g0196741 Lupinus albus HOM05D006304 ORTHO05D008584 3.2e-100 370.5 293 65.9
Mapoly0068s0038 Marchantia polymorpha HOM05D006304 ORTHO05D008584 8.8e-98 362.5 513 45.6
Oeu006477.2 Olea europaea HOM05D006304 ORTHO05D008584 3.5e-94 350.5 854 36.3
Aa31LG11G920 Aethionema arabicum HOM05D006304 ORTHO05D008584 5.0e-93 346.7 850 34.9
CSS0050297 Camellia sinensis var. sinensis HOM05D006304 ORTHO05D008584 1.4e-87 328.6 374 52.1
PSO017G6991 Papaver somniferum HOM05D006304 ORTHO05D008584 5.6e-84 316.6 774 36.6
QL10p015696 Quercus lobata HOM05D006304 ORTHO05D008584 3.0e-77 294.3 679 36.8
CBR_g5693 Chara braunii HOM05D006304 ORTHO05D008584 3.4e-73 280.8 476 39.9
Duzib084G0195 Durio zibethinus HOM05D006304 ORTHO05D008584 2.6e-65 254.6 331 46.8
PGSC0003DMG402033036 Solanum tuberosum HOM05D006304 ORTHO05D008584 3.3e-44 184.5 583 34.8
Cre14.g629400 Chlamydomonas reinhardtii HOM05D006304 ORTHO05D008584 1.6e-35 155.6 206 39.8
Actinidia28212 Actinidia chinensis HOM05D006304 ORTHO05D008584 1.4e-34 152.5 174 55.2
QL10p015692 Quercus lobata HOM05D006304 ORTHO05D008584 2.2e-32 145.2 112 67.0
Lalb_Chr12g0196731 Lupinus albus HOM05D006304 ORTHO05D008584 3.2e-31 141.4 113 65.5
Dinv19922 Davidia involucrata HOM05D006304 ORTHO05D008584 6.7e-21 107.1 89 65.2
QL10p015689 Quercus lobata HOM05D006304 ORTHO05D008584 4.8e-19 100.9 83 69.9
CSS0027196 Camellia sinensis var. sinensis HOM05D006304 ORTHO05D008584 5.3e-18 97.4 82 67.1
CSS0027880 Camellia sinensis var. sinensis HOM05D006304 ORTHO05D008584 1.4e-10 72.8 133 43.6
Duzib084G1176 Durio zibethinus HOM05D006304 ORTHO05D008584 1.2e-09 69.7 72 52.8


User provided reference genes

Program Settings