Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B00384 Eucalyptus grandis HOM05D004983 ORTHO05D005847 1.6e-158 562.8 299 100.0
RcHm_v2.0_Chr7g0180081 Rosa chinensis HOM05D004983 ORTHO05D005847 3.2e-98 362.5 238 76.1
CANSAT80G1912 Cannabis sativa HOM05D004983 ORTHO05D005847 7.1e-98 361.3 260 70.0
FvH4_5g15990 Fragaria vesca HOM05D004983 ORTHO05D005847 7.1e-98 361.3 238 76.9
PGR044G0258 Punica granatum HOM05D004983 ORTHO05D005847 1.6e-97 360.1 298 66.4
Prupe.5G182700 Prunus persica HOM05D004983 ORTHO05D005847 3.9e-96 355.5 289 67.5
FAN18G0171 Fragaria x ananassa HOM05D004983 ORTHO05D005847 8.7e-96 354.4 234 76.5
FAN13G0935 Fragaria x ananassa HOM05D004983 ORTHO05D005847 4.3e-95 352.1 234 76.1
Potri.012G072800 Populus trichocarpa HOM05D004983 ORTHO05D005847 4.3e-95 352.1 253 72.3
QL10p014085 Quercus lobata HOM05D004983 ORTHO05D005847 4.3e-95 352.1 264 68.6
FAN04G0333 Fragaria x ananassa HOM05D004983 ORTHO05D005847 9.7e-95 350.9 237 74.3
GSVIVG01008095001 Vitis vinifera HOM05D004983 ORTHO05D005847 1.6e-94 350.1 228 75.4
MD06G1184000 Malus domestica HOM05D004983 ORTHO05D005847 4.8e-94 348.6 295 64.7
Haze_07411 Corylus avellana HOM05D004983 ORTHO05D005847 1.1e-93 347.4 261 69.0
Hma1.2p1_0572F.1_g181120 Hydrangea macrophylla HOM05D004983 ORTHO05D005847 3.1e-93 345.9 280 65.4
Ciclev10021875m.g Citrus clementina HOM05D004983 ORTHO05D005847 9.0e-93 344.4 247 70.9
CsaV3_1G001940 Cucumis sativus L. HOM05D004983 ORTHO05D005847 4.5e-92 342.0 277 65.7
Oeu022186.1 Olea europaea HOM05D004983 ORTHO05D005847 4.5e-92 342.0 277 66.8
Atru.chr9.2363 Acer truncatum HOM05D004983 ORTHO05D005847 5.0e-91 338.6 245 69.8
VMungo1309G2496 Vigna mungo HOM05D004983 ORTHO05D005847 1.9e-90 336.7 259 67.6
COL.COLO4_20718 Corchorus olitorius HOM05D004983 ORTHO05D005847 3.2e-90 335.9 242 71.1
Glyma.06G188000 Glycine max HOM05D004983 ORTHO05D005847 5.5e-90 335.1 252 69.4
Manes.06G098600 Manihot esculenta HOM05D004983 ORTHO05D005847 5.5e-90 335.1 268 67.5
TAR374G1152 Trochodendron aralioides HOM05D000005 ORTHO05D000012 5.5e-90 335.1 276 64.1
Sabra12G0052000 Salix brachista HOM05D004983 ORTHO05D005847 7.2e-90 334.7 237 71.7
Gohir.D10G187500 Gossypium hirsutum HOM05D004983 ORTHO05D005847 3.6e-89 332.4 238 70.6
CiPaw.12G021900 Carya illinoinensis HOM05D004983 ORTHO05D005847 4.6e-89 332.0 240 69.6
Lsat_1_v5_gn_1_11380 Lactuca sativa HOM05D004983 ORTHO05D005847 1.8e-88 330.1 277 62.5
Thecc.K0001100 Theobroma cacao HOM05D004983 ORTHO05D005847 8.8e-88 327.8 261 66.7
Lalb_Chr08g0236081 Lupinus albus HOM05D004983 ORTHO05D005847 1.5e-87 327.0 284 62.7
Medtr0168s0080 Medicago truncatula HOM05D004983 ORTHO05D005847 1.9e-87 326.6 234 70.9
Dinv13111 Davidia involucrata HOM05D004983 ORTHO05D005847 2.5e-87 326.2 286 64.0
Dinv19894 Davidia involucrata HOM05D004983 ORTHO05D005847 2.5e-87 326.2 278 64.7
Glyma.04G177000 Glycine max HOM05D004983 ORTHO05D005847 4.3e-87 325.5 272 64.3
Phvul.009G183500 Phaseolus vulgaris HOM05D004983 ORTHO05D005847 4.3e-87 325.5 254 66.9
Cc04_g16050 Coffea canephora HOM05D004983 ORTHO05D005847 7.4e-87 324.7 228 72.4
TPR.G37260 Trifolium pratense HOM05D004983 ORTHO05D005847 2.2e-86 323.2 246 68.3
Hund04599 Selenicereus undatus HOM05D004983 ORTHO05D005847 2.8e-86 322.8 292 62.0
AUR62021780 Chenopodium quinoa HOM05D004983 ORTHO05D005847 8.2e-86 321.2 229 69.9
Nitab4.5_0008162g0040 Nicotiana tabacum HOM05D004983 ORTHO05D005847 8.2e-86 321.2 227 70.0
CAN.G999.9 Capsicum annuum HOM05D004983 ORTHO05D005847 1.1e-85 320.9 233 71.7
Duzib205G0093 Durio zibethinus HOM05D004983 ORTHO05D005847 4.1e-85 318.9 238 68.1
arahy.Tifrunner.gnm1.ann1.GD66SW Arachis hypogaea HOM05D004983 ORTHO05D005847 5.3e-85 318.5 237 67.9
arahy.Tifrunner.gnm1.ann1.TQ2Z41 Arachis hypogaea HOM05D004983 ORTHO05D005847 2.6e-84 316.2 240 67.1
Nitab4.5_0000026g0320 Nicotiana tabacum HOM05D004983 ORTHO05D005847 2.6e-84 316.2 287 59.2
PSO591G0429 Papaver somniferum HOM05D004983 ORTHO05D005847 2.6e-84 316.2 231 70.1
AUR62008315 Chenopodium quinoa HOM05D004983 ORTHO05D005847 5.9e-84 315.1 288 59.7
PGSC0003DMG400024570 Solanum tuberosum HOM05D004983 ORTHO05D005847 5.9e-84 315.1 247 66.8
Sc12g0005910 Simmondsia chinensis HOM05D004983 ORTHO05D005847 7.7e-84 314.7 230 68.7
Nn4g22978 Nelumbo nucifera HOM05D004983 ORTHO05D005847 1.3e-83 313.9 295 60.0
Solyc03g113590.3 Solanum lycopersicum HOM05D004983 ORTHO05D005847 1.3e-83 313.9 246 66.7
Sopen03g032630 Solanum pennellii HOM05D004983 ORTHO05D005847 1.7e-83 313.5 246 66.3
CSS0013980 Camellia sinensis var. sinensis HOM05D004983 ORTHO05D005847 3.8e-83 312.4 287 57.5
Thhalv10014312m.g Eutrema salsugineum HOM05D004983 ORTHO05D005847 3.8e-83 312.4 250 62.8
vmacro19336 Vaccinium macrocarpon HOM05D004983 ORTHO05D005847 5.0e-83 312.0 309 56.3
Sp6g30930 Schrenkiella parvula HOM05D004983 ORTHO05D005847 6.5e-83 311.6 235 65.1
BraA10t44577Z Brassica rapa HOM05D004983 ORTHO05D005847 8.5e-83 311.2 258 62.0
A10p25150 Brassica napus HOM05D004983 ORTHO05D005847 1.1e-82 310.8 258 62.0
C09p64060 Brassica napus HOM05D004983 ORTHO05D005847 1.4e-82 310.5 258 61.2
Migut.I00071 Erythranthe guttata HOM05D004983 ORTHO05D005847 1.4e-82 310.5 281 61.9
BolC9t59243H Brassica oleracea HOM05D004983 ORTHO05D005847 2.5e-82 309.7 258 61.2
DCAR_016523 Daucus carota HOM05D004983 ORTHO05D005847 4.2e-82 308.9 294 59.2
HanXRQChr02g0045351 Helianthus annuus HOM05D004983 ORTHO05D005847 7.2e-82 308.1 224 69.2
SGA_v2.0_scaffold25G10860 Striga asiatica HOM05D004983 ORTHO05D005847 9.4e-82 307.8 232 70.3
Aqoxy3G00847 Aquilegia oxysepala HOM05D004983 ORTHO05D005847 2.1e-81 306.6 235 66.4
AL6G23630 Arabidopsis lyrata HOM05D004983 ORTHO05D005847 2.7e-81 306.2 235 65.1
AT5G13050 Arabidopsis thaliana HOM05D004983 ORTHO05D005847 2.7e-81 306.2 235 64.7
CARHR200420 Cardamine hirsuta HOM05D004983 ORTHO05D005847 2.7e-81 306.2 235 65.1
Ciclev10032272m.g Citrus clementina HOM05D004983 ORTHO05D005847 3.6e-81 305.8 229 65.1
Rhsim08G0163200 Rhododendron simsii HOM05D004983 ORTHO05D005847 3.6e-81 305.8 329 53.8
Aa31LG3G14620 Aethionema arabicum HOM05D004983 ORTHO05D005847 4.7e-81 305.4 273 59.3
Actinidia04943 Actinidia chinensis HOM05D004983 ORTHO05D005847 1.4e-80 303.9 263 61.6
Carub.0006s1121 Capsella rubella HOM05D004983 ORTHO05D005847 3.0e-80 302.8 235 63.8
Ah.02g112940 Amaranthus hybridus HOM05D004983 ORTHO05D005847 1.1e-79 300.8 226 68.6
EL10Ac5g10876 Beta vulgaris HOM05D004983 ORTHO05D005847 1.1e-79 300.8 287 59.6
TWI75G1117 Tripterygium wilfordii HOM05D004983 ORTHO05D005847 1.1e-79 300.8 227 65.6
Lj1g0016910 Lotus japonicus HOM05D004983 ORTHO05D005847 2.6e-79 299.7 201 75.1
QL03p067716 Quercus lobata HOM05D004983 ORTHO05D005847 3.3e-79 299.3 289 56.4
QL03p067725 Quercus lobata HOM05D004983 ORTHO05D005847 4.4e-79 298.9 290 55.5
Gohir.D12G050100 Gossypium hirsutum HOM05D004983 ORTHO05D005847 5.7e-79 298.5 229 65.5
TPR.G19166 Trifolium pratense HOM05D004983 ORTHO05D005847 5.7e-79 298.5 217 70.0
BolC2t06531H Brassica oleracea HOM05D004983 ORTHO05D005847 9.7e-79 297.7 283 56.5
ECA247G1770 Erigeron canadensis HOM05D004983 ORTHO05D005847 1.3e-78 297.4 271 58.7
Gorai.008G053300 Gossypium raimondii HOM05D004983 ORTHO05D005847 2.2e-78 296.6 229 65.5
BcaNung01856 Brassica carinata HOM05D001227 ORTHO05D001082 3.7e-78 295.8 281 56.9
C02p05860 Brassica napus HOM05D001227 ORTHO05D001082 3.7e-78 295.8 281 57.7
Gohir.A12G051800 Gossypium hirsutum HOM05D004983 ORTHO05D005847 3.7e-78 295.8 229 65.1
Thecc.02G237100 Theobroma cacao HOM05D004983 ORTHO05D005847 3.7e-78 295.8 283 58.0
BraA02t05144Z Brassica rapa HOM05D001227 ORTHO05D001082 6.3e-78 295.0 281 54.8
A02p01650 Brassica napus HOM05D001227 ORTHO05D001082 8.2e-78 294.7 273 56.4
Prupe.1G263300 Prunus persica HOM05D004983 ORTHO05D005847 3.1e-77 292.7 287 55.1
HPP92_014218 Vanilla planifolia HOM05D004983 ORTHO05D005847 9.1e-77 291.2 231 65.8
HPP92_026476 Vanilla planifolia HOM05D004983 ORTHO05D005847 9.1e-77 291.2 294 56.5
Haze_12108 Corylus avellana HOM05D004983 ORTHO05D005847 3.5e-76 289.3 292 54.8
Ah.02g112900 Amaranthus hybridus HOM05D004983 ORTHO05D005847 5.9e-76 288.5 231 64.5
Ah.11g048970 Amaranthus hybridus HOM05D004983 ORTHO05D005847 1.0e-75 287.7 284 58.1
CiPaw.05G143400 Carya illinoinensis HOM05D004983 ORTHO05D005847 1.3e-75 287.3 231 62.3
Os07g0578600 Oryza sativa ssp. japonica HOM05D004983 ORTHO05D005847 2.9e-75 286.2 223 63.7
ATR0665G657 Amborella trichopoda HOM05D004983 ORTHO05D005847 8.5e-75 284.6 244 61.9
Peaxi162Scf00017g02122 Petunia axillaris HOM05D004983 ORTHO05D005847 8.5e-75 284.6 282 57.4
arahy.Tifrunner.gnm1.ann1.N4VW2L Arachis hypogaea HOM05D004983 ORTHO05D005847 1.4e-74 283.9 299 53.2
arahy.Tifrunner.gnm1.ann1.G2IRY3 Arachis hypogaea HOM05D004983 ORTHO05D005847 2.5e-74 283.1 289 54.3
Peaxi162Scf00496g00013 Petunia axillaris HOM05D004983 ORTHO05D005847 2.5e-74 283.1 215 67.9
FvH4_4g35410 Fragaria vesca HOM05D004983 ORTHO05D005847 7.2e-74 281.6 282 53.9
MELO3C017137.2 Cucumis melo HOM05D004983 ORTHO05D005847 2.1e-73 280.0 278 57.9
Gorai.011G210300 Gossypium raimondii HOM05D004983 ORTHO05D005847 2.7e-73 279.6 238 63.4
CDE07G0592 Ceratophyllum demersum HOM05D004983 ORTHO05D005847 8.0e-73 278.1 240 60.4
RcHm_v2.0_Chr4g0445021 Rosa chinensis HOM05D004983 ORTHO05D005847 3.9e-72 275.8 284 52.8
Atru.chr11.1914 Acer truncatum HOM05D004983 ORTHO05D005847 2.6e-71 273.1 259 56.4
Zm00001eb107660 Zea mays HOM05D004983 ORTHO05D005847 3.3e-71 272.7 224 61.6
AUR62021779 Chenopodium quinoa HOM05D004983 ORTHO05D005847 3.7e-70 269.2 198 69.7
FAN07G1154 Fragaria x ananassa HOM05D004983 ORTHO05D005847 1.4e-69 267.3 306 49.0
unitig_27.g25109 Utricularia gibba HOM05D000870 ORTHO05D005847 1.6e-68 263.8 195 66.7
BcaNung01178 Brassica carinata HOM05D004983 ORTHO05D005847 4.2e-66 255.8 299 49.5
FAN22G0524 Fragaria x ananassa HOM05D004983 ORTHO05D005847 2.6e-63 246.5 234 55.6
Duzib251G0645 Durio zibethinus HOM05D004983 ORTHO05D005847 6.3e-62 241.9 186 64.5
Cpa.g.sc203.7 Carica papaya HOM05D004983 ORTHO05D005847 1.1e-61 241.1 259 51.4
MD16G1082800 Malus domestica HOM05D004983 ORTHO05D005847 1.4e-61 240.7 292 48.3
CSS0025366 Camellia sinensis var. sinensis HOM05D004983 ORTHO05D005847 2.4e-61 240.0 159 74.8
FAN12G3769 Fragaria x ananassa HOM05D004983 ORTHO05D005847 7.0e-61 238.4 321 44.9
Psat5g181720 Pisum sativum HOM05D004983 ORTHO05D005847 1.2e-60 237.7 144 81.2
Sed0011699 Sechium edule HOM05D004983 ORTHO05D005847 1.2e-60 237.7 222 60.4
SMO271G0141 Selaginella moellendorffii HOM05D004983 ORTHO05D005847 3.5e-60 236.1 222 56.3
AagrBONN_evm.TU.Sc2ySwM_362.273 Anthoceros agrestis HOM05D004983 ORTHO05D005847 5.9e-60 235.3 241 54.8
SalBow5G1630 Salvia bowleyana HOM05D004983 ORTHO05D005847 2.9e-59 233.0 231 56.7
Nitab4.5_0002376g0010 Nicotiana tabacum HOM05D004983 ORTHO05D005847 8.5e-59 231.5 265 48.3
Gohir.A10G180700 Gossypium hirsutum HOM05D004983 ORTHO05D005847 2.5e-58 229.9 149 74.5
Nn4g24106 Nelumbo nucifera HOM05D004983 ORTHO05D005847 1.2e-57 227.6 229 54.1
Lj9A456T34 Lonicera japonica HOM05D004983 ORTHO05D005847 2.1e-57 226.9 140 80.0
Mapoly0019s0150 Marchantia polymorpha HOM05D004983 ORTHO05D005847 3.6e-57 226.1 251 50.6
Dinv31146 Davidia involucrata HOM05D004983 ORTHO05D005847 5.2e-56 222.2 152 69.7
Atru.chr11.1910 Acer truncatum HOM05D004983 ORTHO05D005847 2.2e-54 216.9 152 70.4
Nitab4.5_0000642g0190 Nicotiana tabacum HOM05D004983 ORTHO05D005847 3.3e-50 203.0 281 48.0
Nitab4.5_0000710g0080 Nicotiana tabacum HOM05D004983 ORTHO05D005847 8.3e-46 188.3 160 58.1
CBR_g34194 Chara braunii HOM05D004983 ORTHO05D005847 2.9e-43 179.9 251 42.6
Nitab4.5_0009486g0020 Nicotiana tabacum HOM05D004983 ORTHO05D005847 6.1e-41 172.2 203 51.7
SEGI_36548 Sequoiadendron giganteum HOM05D004983 ORTHO05D005847 7.5e-39 165.2 136 60.3
Pp3c3_32060 Physcomitrium patens HOM05D004983 ORTHO05D005847 3.7e-38 162.9 163 54.0
GSVIVG01020126001 Vitis vinifera HOM05D004983 ORTHO05D005847 8.3e-38 161.8 129 61.2
Hma1.2p1_4120F.1_g338320 Hydrangea macrophylla HOM05D004983 ORTHO05D005847 4.1e-37 159.5 96 79.2
Pp3c12_22470 Physcomitrium patens HOM05D004983 ORTHO05D005847 3.5e-36 156.4 176 51.7
Cre09.g403293 Chlamydomonas reinhardtii HOM05D004983 ORTHO05D005847 8.9e-32 141.7 212 41.5
SEGI_02343 Sequoiadendron giganteum HOM05D004983 ORTHO05D005847 6.0e-28 129.0 96 68.8
FAN17G3002 Fragaria x ananassa HOM05D004983 ORTHO05D005847 2.2e-22 110.5 164 40.9
ClCG06G016570 Citrullus lanatus HOM05D004983 ORTHO05D005847 4.9e-22 109.4 118 51.7
MCO01G728 Micromonas commoda HOM05D004983 ORTHO05D005847 1.4e-21 107.8 245 33.9
PRCOL_00002663 Prasinoderma coloniale HOM05D004983 ORTHO05D005847 1.2e-20 104.8 234 32.1
Psat0s864g0040 Pisum sativum HOM05D004983 ORTHO05D005847 4.6e-20 102.8 79 65.8
Atru.chr11.1911 Acer truncatum HOM05D004983 ORTHO05D005847 9.5e-18 95.1 126 46.0
Nitab4.5_0000710g0100 Nicotiana tabacum HOM05D004983 ORTHO05D005847 3.0e-11 73.6 60 55.0
Cfa021669 Carpinus fangiana HOM05D004983 ORTHO05D005847 9.9e-07 58.5 184 28.8


User provided reference genes

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