Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B00339 Eucalyptus grandis HOM05D006519 ORTHO05D008306 8.2e-117 423.7 209 100.0
RcHm_v2.0_Chr7g0179701 Rosa chinensis HOM05D006519 ORTHO05D008306 1.8e-92 342.8 209 77.5
Haze_07439 Corylus avellana HOM05D006519 ORTHO05D008306 3.5e-91 338.6 209 77.5
FvH4_5g16400 Fragaria vesca HOM05D006519 ORTHO05D008306 7.7e-91 337.4 209 77.0
FAN18G3891 Fragaria x ananassa HOM05D006519 ORTHO05D008306 7.7e-91 337.4 209 77.0
FAN13G2537 Fragaria x ananassa HOM05D006519 ORTHO05D008306 2.2e-90 335.9 209 77.5
FAN08G1114 Fragaria x ananassa HOM05D006519 ORTHO05D008306 3.8e-90 335.1 207 77.3
CANSAT80G0931 Cannabis sativa HOM05D006519 ORTHO05D008306 1.9e-89 332.8 209 76.1
CiPaw.11G031700 Carya illinoinensis HOM05D006519 ORTHO05D008306 2.5e-89 332.4 209 76.6
TPR.G37507 Trifolium pratense HOM05D006519 ORTHO05D008306 5.5e-89 331.3 209 73.7
Glyma.05G033800 Glycine max HOM05D006519 ORTHO05D008306 9.4e-89 330.5 209 73.7
Psat0s1227g0160 Pisum sativum HOM05D006519 ORTHO05D008306 3.6e-88 328.6 209 73.2
Gohir.D04G001000 Gossypium hirsutum HOM05D006519 ORTHO05D008306 1.8e-87 326.2 209 75.6
Ca_21889_v3 Cicer arietinum L. HOM05D006519 ORTHO05D008306 5.2e-87 324.7 209 72.2
Gorai.012G002000 Gossypium raimondii HOM05D006519 ORTHO05D008306 6.8e-87 324.3 209 75.1
TWI81G0852 Tripterygium wilfordii HOM05D006519 ORTHO05D008306 3.4e-86 322.0 209 71.8
Prupe.5G179000 Prunus persica HOM05D006519 ORTHO05D008306 5.7e-86 321.2 210 75.2
MD06G1181000 Malus domestica HOM05D006519 ORTHO05D008306 9.8e-86 320.5 209 74.2
Medtr4g106410 Medicago truncatula HOM05D006519 ORTHO05D008306 9.8e-86 320.5 208 72.1
THA.LOC104809258 Tarenaya hassleriana HOM05D006519 ORTHO05D008306 1.7e-85 319.7 209 71.3
GSVIVG01007824001 Vitis vinifera HOM05D006519 ORTHO05D008306 1.7e-85 319.7 209 72.2
HanXRQChr09g0271821 Helianthus annuus HOM05D006519 ORTHO05D008306 2.8e-85 318.9 209 71.8
Lj4g0003537 Lotus japonicus HOM05D006519 ORTHO05D008306 4.8e-85 318.2 209 73.2
CsaV3_1G008220 Cucumis sativus L. HOM05D006519 ORTHO05D008306 1.8e-84 316.2 210 72.4
Lsat_1_v5_gn_4_73480 Lactuca sativa HOM05D006519 ORTHO05D008306 3.1e-84 315.5 209 71.8
Actinidia34959 Actinidia chinensis HOM05D006519 ORTHO05D008306 4.1e-84 315.1 209 71.3
ECA232G3316 Erigeron canadensis HOM05D006519 ORTHO05D008306 4.1e-84 315.1 209 71.3
PGR083G2560 Punica granatum HOM05D006519 ORTHO05D008306 4.1e-84 315.1 200 76.0
Sabra12G0054300 Salix brachista HOM05D006519 ORTHO05D008306 4.1e-84 315.1 209 71.8
Sed0010209 Sechium edule HOM05D006519 ORTHO05D008306 4.1e-84 315.1 210 72.4
DCAR_031285 Daucus carota HOM05D006519 ORTHO05D008306 9.1e-84 313.9 209 75.1
Potri.012G076100 Populus trichocarpa HOM05D006519 ORTHO05D008306 1.2e-83 313.5 209 71.8
CSS0037543 Camellia sinensis var. sinensis HOM05D006519 ORTHO05D008306 1.6e-83 313.2 209 72.2
TAR629G1196 Trochodendron aralioides HOM05D006519 ORTHO05D008306 1.6e-83 313.2 209 71.8
Lalb_Chr07g0182571 Lupinus albus HOM05D006519 ORTHO05D008306 2.0e-83 312.8 209 70.3
arahy.Tifrunner.gnm1.ann1.L198ZR Arachis hypogaea HOM05D006519 ORTHO05D008306 2.7e-83 312.4 211 71.6
Ciclev10021480m.g Citrus clementina HOM05D006519 ORTHO05D008306 2.7e-83 312.4 210 70.0
Nn3g17016 Nelumbo nucifera HOM05D006519 ORTHO05D008306 3.5e-83 312.0 209 71.3
CSS0018091 Camellia sinensis var. sinensis HOM05D006519 ORTHO05D008306 7.7e-83 310.8 209 71.8
arahy.Tifrunner.gnm1.ann1.IBQC5J Arachis hypogaea HOM05D006519 ORTHO05D008306 1.0e-82 310.5 211 71.1
MELO3C002238.2 Cucumis melo HOM05D006519 ORTHO05D008306 1.0e-82 310.5 210 71.4
Gohir.A05G415200 Gossypium hirsutum HOM05D006519 ORTHO05D008306 1.7e-82 309.7 201 74.1
ClCG01G014120 Citrullus lanatus HOM05D006519 ORTHO05D008306 2.3e-82 309.3 223 69.1
Duzib068G0259 Durio zibethinus HOM05D006519 ORTHO05D008306 2.3e-82 309.3 209 72.7
Solyc03g113860.2 Solanum lycopersicum HOM05D006519 ORTHO05D008306 5.0e-82 308.1 209 72.2
Sc12g0005660 Simmondsia chinensis HOM05D006519 ORTHO05D008306 6.6e-82 307.8 209 70.3
Phvul.003G197000 Phaseolus vulgaris HOM05D006519 ORTHO05D008306 8.6e-82 307.4 197 73.1
MBI14_g12785_MAGBIO Magnolia biondii HOM05D006519 ORTHO05D008306 1.9e-81 306.2 209 69.9
Oeu016332.2 Olea europaea HOM05D006519 ORTHO05D008306 3.3e-81 305.4 209 72.2
MSTRG.11426 Avicennia marina HOM05D006519 ORTHO05D008306 7.2e-81 304.3 209 74.6
Peaxi162Scf00017g02523 Petunia axillaris HOM05D006519 ORTHO05D008306 7.2e-81 304.3 209 71.8
Migut.I00056 Erythranthe guttata HOM05D006519 ORTHO05D008306 1.6e-80 303.1 209 73.2
Hund02710 Selenicereus undatus HOM05D006519 ORTHO05D008306 1.6e-80 303.1 209 70.8
Sopen03g032910 Solanum pennellii HOM05D006519 ORTHO05D008306 2.1e-80 302.8 209 71.3
Thecc.03G004500 Theobroma cacao HOM05D006519 ORTHO05D008306 2.8e-80 302.4 205 71.2
PGSC0003DMG400024585 Solanum tuberosum HOM05D006519 ORTHO05D008306 3.6e-80 302.0 209 70.8
Aa31sc174G50 Aethionema arabicum HOM05D006519 ORTHO05D008306 4.7e-80 301.6 209 67.5
CAN.G853.13 Capsicum annuum HOM05D006519 ORTHO05D008306 6.1e-80 301.2 209 70.8
AT5G50110 Arabidopsis thaliana HOM05D006519 ORTHO05D008306 1.0e-79 300.4 209 67.9
Cc04_g13570 Coffea canephora HOM05D006519 ORTHO05D008306 2.3e-79 299.3 209 69.9
Nitab4.5_0003386g0010 Nicotiana tabacum HOM05D006519 ORTHO05D008306 2.3e-79 299.3 209 70.8
Sp6g11980 Schrenkiella parvula HOM05D006519 ORTHO05D008306 6.8e-79 297.7 209 67.0
Carub.0008s1012 Capsella rubella HOM05D006519 ORTHO05D008306 8.9e-79 297.4 209 66.0
AL8G24100 Arabidopsis lyrata HOM05D006519 ORTHO05D008306 1.5e-78 296.6 209 66.0
BcaB01g02918 Brassica carinata HOM05D006519 ORTHO05D008306 2.6e-78 295.8 209 66.5
A03p27660 Brassica napus HOM05D006519 ORTHO05D008306 7.5e-78 294.3 209 68.4
BraA03t11979Z Brassica rapa HOM05D006519 ORTHO05D008306 7.5e-78 294.3 209 68.4
CARHR258520 Cardamine hirsuta HOM05D006519 ORTHO05D008306 1.7e-77 293.1 209 66.0
Ah.11g046180 Amaranthus hybridus HOM05D006519 ORTHO05D008306 3.7e-77 292.0 209 65.6
BcaC01g04830 Brassica carinata HOM05D006519 ORTHO05D008306 3.7e-77 292.0 209 67.5
C03p33370 Brassica napus HOM05D006519 ORTHO05D008306 3.7e-77 292.0 209 67.5
BolC3t15659H Brassica oleracea HOM05D006519 ORTHO05D008306 3.7e-77 292.0 209 67.5
AUR62008282 Chenopodium quinoa HOM05D006519 ORTHO05D008306 2.4e-76 289.3 200 69.0
PSO591G0501 Papaver somniferum HOM05D006519 ORTHO05D008306 4.1e-76 288.5 239 61.9
ATR0314G030 Amborella trichopoda HOM05D006519 ORTHO05D008306 5.0e-74 281.6 209 66.0
SalBow5G4476 Salvia bowleyana HOM05D006519 ORTHO05D008306 2.5e-73 279.3 253 57.3
SalBow5G0752 Salvia bowleyana HOM05D006519 ORTHO05D008306 3.3e-73 278.9 253 57.3
Atru.chr9.2404 Acer truncatum HOM05D006519 ORTHO05D008306 2.8e-72 275.8 209 66.5
EL10Ac5g10829 Beta vulgaris HOM05D006519 ORTHO05D008306 3.6e-72 275.4 261 55.2
Zm00001eb279990 Zea mays HOM05D006519 ORTHO05D008306 1.1e-68 263.8 212 59.4
Pp3c21_11830 Physcomitrium patens HOM05D006519 ORTHO05D008306 2.4e-68 262.7 210 61.0
Thhalv10014373m.g Eutrema salsugineum HOM05D006519 ORTHO05D008306 7.8e-67 257.7 209 60.8
Mapoly0003s0145 Marchantia polymorpha HOM05D006519 ORTHO05D008306 1.9e-65 253.1 210 60.0
SGA_v2.0_scaffold467G52031 Striga asiatica HOM05D006519 ORTHO05D008306 4.7e-64 248.4 170 70.0
COL.COLO4_04635 Corchorus olitorius HOM05D006519 ORTHO05D008306 4.0e-63 245.4 172 72.1
SMO236G0037 Selaginella moellendorffii HOM05D006519 ORTHO05D008306 3.4e-62 242.3 203 58.1
unitig_62.g23572 Utricularia gibba HOM05D006519 ORTHO05D008306 1.9e-60 236.5 171 67.3
Hma1.2p1_0002F.1_g002810 Hydrangea macrophylla HOM05D006519 ORTHO05D008306 1.6e-59 233.4 222 55.9
Rhsim12G0161700 Rhododendron simsii HOM05D006519 ORTHO05D008306 3.5e-59 232.3 206 60.7
vmacro16588 Vaccinium macrocarpon HOM05D006519 ORTHO05D008306 1.5e-57 226.9 183 62.3
AUR62031043 Chenopodium quinoa HOM05D006519 ORTHO05D008306 5.6e-57 224.9 149 70.5
Lj9C454G3 Lonicera japonica HOM05D006519 ORTHO05D008306 1.1e-55 220.7 209 55.5
MD14G1186900 Malus domestica HOM05D006519 ORTHO05D008306 1.8e-55 219.9 168 66.7
Nitab4.5_0001642g0020 Nicotiana tabacum HOM05D006519 ORTHO05D008306 2.6e-46 189.5 133 69.2
Manes.06G100700 Manihot esculenta HOM05D006519 ORTHO05D008306 2.9e-45 186.0 126 70.6
AagrBONN_evm.TU.Sc2ySwM_228.2029 Anthoceros agrestis HOM05D006519 ORTHO05D008306 1.9e-44 183.3 165 55.8
MD14G1186100 Malus domestica HOM05D006519 ORTHO05D008306 4.3e-41 172.2 147 60.5
MCO15G300 Micromonas commoda HOM05D006519 ORTHO05D008306 2.8e-40 169.5 217 47.0
VMungo1215G1861 Vigna mungo HOM05D006519 ORTHO05D008306 8.1e-40 167.9 149 57.7
Glyma.17G093302 Glycine max HOM05D006519 ORTHO05D008306 1.5e-38 163.7 101 74.3
Cre09.g394584 Chlamydomonas reinhardtii HOM05D006519 ORTHO05D008306 2.0e-38 163.3 283 37.5
Hma1.2p1_0002F.1_g002800 Hydrangea macrophylla HOM05D006519 ORTHO05D008306 1.9e-36 156.8 101 71.3
Actinidia19081 Actinidia chinensis HOM05D006519 ORTHO05D008306 7.1e-36 154.8 140 54.3
HPP92_010835 Vanilla planifolia HOM05D006519 ORTHO05D008306 7.1e-36 154.8 137 58.4
MD13G1183500 Malus domestica HOM05D006519 ORTHO05D008306 1.7e-34 150.2 100 71.0
Cpa.g.sc35.56 Carica papaya HOM05D006519 ORTHO05D008306 1.1e-33 147.5 100 70.0
arahy.Tifrunner.gnm1.ann1.KZGX7R Arachis hypogaea HOM05D006519 ORTHO05D008306 5.4e-28 128.6 102 61.8
SEGI_15669 Sequoiadendron giganteum HOM05D006519 ORTHO05D008306 2.1e-27 126.7 101 60.4
arahy.Tifrunner.gnm1.ann1.J4WABN Arachis hypogaea HOM05D006519 ORTHO05D008306 1.8e-26 123.6 96 60.4
Os06g0239000 Oryza sativa ssp. japonica HOM05D006519 ORTHO05D008306 2.3e-26 123.2 101 59.4
CDE06G0478 Ceratophyllum demersum HOM05D006519 ORTHO05D008306 3.1e-23 112.8 83 60.2
arahy.Tifrunner.gnm1.ann1.9L22J7 Arachis hypogaea HOM05D006519 ORTHO05D014446 7.6e-22 108.2 108 49.1
PRCOL_00000545 Prasinoderma coloniale HOM05D006519 ORTHO05D008306 1.9e-20 103.6 136 46.3
Nitab4.5_0001642g0010 Nicotiana tabacum HOM05D006519 ORTHO05D008306 7.9e-19 98.2 63 76.2
HanXRQChr11g0328331 Helianthus annuus HOM05D006519 ORTHO05D008306 2.3e-18 96.7 63 69.8
C05p16930 Brassica napus HOM05D006519 ORTHO05D008306 1.3e-16 90.9 75 62.7
arahy.Tifrunner.gnm1.ann1.RNN7F2 Arachis hypogaea HOM05D006519 ORTHO05D008306 1.5e-14 84.0 86 54.7
SEGI_16810 Sequoiadendron giganteum HOM05D006519 ORTHO05D008306 6.5e-13 78.6 51 72.5
arahy.Tifrunner.gnm1.ann1.4TMU9W Arachis hypogaea HOM05D005365 ORTHO05D006910 1.9e-12 77.0 65 60.0
arahy.Tifrunner.gnm1.ann1.PY279F Arachis hypogaea HOM05D006519 ORTHO05D008306 5.5e-12 75.5 65 60.0
Dinv20697 Davidia involucrata HOM05D006519 ORTHO05D008306 5.5e-12 75.5 53 69.8
Potri.015G071001 Populus trichocarpa HOM05D006519 ORTHO05D008306 1.0e-10 71.2 52 67.3
arahy.Tifrunner.gnm1.ann1.MFZI3Y Arachis hypogaea HOM05D005365 ORTHO05D006910 7.4e-09 65.1 65 52.3
BcaC05g25762 Brassica carinata HOM05D006519 ORTHO05D008306 2.2e-08 63.5 56 58.9
CBR_g30328 Chara braunii HOM05D000019 ORTHO05D000048 4.8e-08 62.4 75 46.7


User provided reference genes

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