Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B00317 Eucalyptus grandis HOM05D003929 ORTHO05D004499 5.1e-285 983.8 523 100.0
TWI14G0242 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 6.3e-158 561.6 513 61.8
Prupe.5G174100 Prunus persica HOM05D003929 ORTHO05D004499 1.0e-155 554.3 511 64.0
Atru.chr9.2475 Acer truncatum HOM05D003929 ORTHO05D004499 1.7e-155 553.5 515 60.2
Potri.012G080800 Populus trichocarpa HOM05D003929 ORTHO05D004499 6.1e-153 545.0 512 61.7
QL10p011722 Quercus lobata HOM05D003929 ORTHO05D004499 5.7e-151 538.5 506 61.9
RcHm_v2.0_Chr7g0193581 Rosa chinensis HOM05D003929 ORTHO05D004499 4.8e-150 535.4 526 61.2
CiPaw.11G026500 Carya illinoinensis HOM05D003929 ORTHO05D004499 4.1e-149 532.3 509 60.5
Dinv20657 Davidia involucrata HOM05D003929 ORTHO05D004499 2.7e-148 529.6 518 60.0
FAN13G1321 Fragaria x ananassa HOM05D003929 ORTHO05D004499 2.7e-148 529.6 521 61.2
PGR083G1389 Punica granatum HOM05D003929 ORTHO05D004499 3.5e-148 529.3 514 59.9
FAN04G3176 Fragaria x ananassa HOM05D003929 ORTHO05D004499 5.9e-148 528.5 522 61.9
GSVIVG01007750001 Vitis vinifera HOM05D003929 ORTHO05D004499 5.9e-148 528.5 518 60.2
Cpa.g.sc770.1 Carica papaya HOM05D003929 ORTHO05D004499 1.7e-147 526.9 516 60.1
FvH4_5g05290 Fragaria vesca HOM05D003929 ORTHO05D004499 1.7e-147 526.9 522 60.9
Cfa019114 Carpinus fangiana HOM05D003929 ORTHO05D004499 8.5e-147 524.6 534 58.1
FAN18G3765 Fragaria x ananassa HOM05D003929 ORTHO05D004499 4.2e-146 522.3 522 60.5
FAN18G3294 Fragaria x ananassa HOM05D003929 ORTHO05D004499 5.5e-146 521.9 522 60.0
Dinv02898 Davidia involucrata HOM05D003929 ORTHO05D004499 2.1e-145 520.0 516 59.7
TWI39G0937 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 1.0e-144 517.7 509 59.5
Potri.015G076100 Populus trichocarpa HOM05D003929 ORTHO05D004499 2.3e-144 516.5 514 59.9
TWI31G0970 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 8.3e-142 508.1 509 58.7
Rhsim08G0171800 Rhododendron simsii HOM05D003929 ORTHO05D004499 1.1e-141 507.7 526 58.2
Duzib205G0135 Durio zibethinus HOM05D003929 ORTHO05D004499 2.0e-140 503.4 515 58.6
Hma1.2p1_0176F.1_g077430 Hydrangea macrophylla HOM05D003929 ORTHO05D004499 3.3e-138 496.1 523 57.2
Manes.06G104600 Manihot esculenta HOM05D003929 ORTHO05D004499 1.6e-137 493.8 497 58.1
Manes.14G066000 Manihot esculenta HOM05D003929 ORTHO05D004499 4.7e-137 492.3 521 58.5
MD14G1180600 Malus domestica HOM05D003929 ORTHO05D004499 2.3e-136 490.0 490 60.4
CiPaw.12G026400 Carya illinoinensis HOM05D003929 ORTHO05D004499 8.9e-136 488.0 514 57.6
CSS0017959 Camellia sinensis var. sinensis HOM05D003929 ORTHO05D004499 1.5e-135 487.3 493 58.8
Haze_07467 Corylus avellana HOM05D003929 ORTHO05D004499 3.4e-135 486.1 596 51.5
Duzib068G1333 Durio zibethinus HOM05D003929 ORTHO05D004499 4.4e-135 485.7 520 58.3
CANSAT80G0843 Cannabis sativa HOM05D003929 ORTHO05D004499 9.8e-135 484.6 507 56.8
FAN08G2589 Fragaria x ananassa HOM05D003929 ORTHO05D004499 3.7e-134 482.6 524 58.2
MD06G1174100 Malus domestica HOM05D003929 ORTHO05D004499 1.1e-133 481.1 493 59.8
Lalb_Chr13g0297821 Lupinus albus HOM05D003929 ORTHO05D004499 1.8e-133 480.3 517 57.8
TAR374G1605 Trochodendron aralioides HOM05D003929 ORTHO05D004499 1.2e-132 477.6 541 55.3
Nitab4.5_0001017g0080 Nicotiana tabacum HOM05D003929 ORTHO05D004499 2.7e-132 476.5 515 55.3
Gohir.A12G274000 Gossypium hirsutum HOM05D003929 ORTHO05D004499 5.9e-132 475.3 498 56.6
Gorai.008G295200 Gossypium raimondii HOM05D003929 ORTHO05D004499 2.3e-131 473.4 497 56.5
TPR.G37553 Trifolium pratense HOM05D003929 ORTHO05D004499 2.9e-131 473.0 517 54.9
Gohir.D12G274700 Gossypium hirsutum HOM05D003929 ORTHO05D004499 3.8e-131 472.6 498 56.4
Thecc.03G012300 Theobroma cacao HOM05D003929 ORTHO05D004499 1.9e-130 470.3 519 54.9
Oeu016382.1 Olea europaea HOM05D003929 ORTHO05D004499 9.5e-130 468.0 519 55.5
Peaxi162Scf00017g02914 Petunia axillaris HOM05D003929 ORTHO05D004499 1.6e-129 467.2 528 54.2
ECA232G3264 Erigeron canadensis HOM05D003929 ORTHO05D004499 1.8e-128 463.8 526 54.9
Sed0022246 Sechium edule HOM05D003929 ORTHO05D004499 6.8e-128 461.8 506 57.7
DCAR_026132 Daucus carota HOM05D003929 ORTHO05D004499 1.5e-127 460.7 519 54.9
Phvul.009G178800 Phaseolus vulgaris HOM05D003929 ORTHO05D004499 5.8e-127 458.8 521 52.4
Glyma.06G182600 Glycine max HOM05D003929 ORTHO05D004499 9.8e-127 458.0 486 55.1
Solyc06g071470.4 Solanum lycopersicum HOM05D003929 ORTHO05D004499 1.3e-126 457.6 510 56.1
Sopen06g027750 Solanum pennellii HOM05D003929 ORTHO05D004499 2.9e-126 456.4 516 55.4
PGSC0003DMG400027090 Solanum tuberosum HOM05D003929 ORTHO05D004499 2.9e-126 456.4 510 55.9
CAN.G628.79 Capsicum annuum HOM05D003929 ORTHO05D004499 4.9e-126 455.7 510 54.9
TAR622G0564 Trochodendron aralioides HOM05D003929 ORTHO05D004499 8.3e-126 454.9 557 52.4
VMungo1309G0717 Vigna mungo HOM05D003929 ORTHO05D004499 1.9e-125 453.8 482 53.9
Medtr4g106880 Medicago truncatula HOM05D003929 ORTHO05D004499 9.2e-125 451.4 517 55.1
SalBow5G2324 Salvia bowleyana HOM05D003929 ORTHO05D004499 9.2e-125 451.4 516 52.7
Cc04_g14000 Coffea canephora HOM05D003929 ORTHO05D004499 3.9e-123 446.0 508 55.3
MSTRG.11449 Avicennia marina HOM05D003929 ORTHO05D004499 5.0e-123 445.7 514 54.5
HanXRQChr16g0504021 Helianthus annuus HOM05D003929 ORTHO05D004499 5.6e-122 442.2 509 55.6
CAN.G781.12 Capsicum annuum HOM05D003929 ORTHO05D004499 1.2e-121 441.0 510 52.2
ClCG06G017000 Citrullus lanatus HOM05D003929 ORTHO05D004499 3.6e-121 439.5 511 56.0
Lj4g0023186 Lotus japonicus HOM05D003929 ORTHO05D004499 4.7e-121 439.1 520 54.2
Phvul.003G200200 Phaseolus vulgaris HOM05D003929 ORTHO05D004499 6.2e-121 438.7 519 53.4
PGR044G0511 Punica granatum HOM05D003929 ORTHO05D004499 1.8e-120 437.2 499 54.5
Aqoxy3G02955 Aquilegia oxysepala HOM05D003929 ORTHO05D004499 8.9e-120 434.9 520 53.8
Ca_21916_v3 Cicer arietinum L. HOM05D003929 ORTHO05D004499 7.5e-119 431.8 503 53.9
PSO063G6021 Papaver somniferum HOM05D003929 ORTHO05D004499 7.5e-119 431.8 543 51.7
Lsat_1_v5_gn_4_75281 Lactuca sativa HOM05D003929 ORTHO05D004499 6.4e-118 428.7 531 52.5
vmacro19383 Vaccinium macrocarpon HOM05D003929 ORTHO05D004499 8.3e-118 428.3 510 51.6
Sp2g25960 Schrenkiella parvula HOM05D003929 ORTHO05D004499 2.4e-117 426.8 525 49.9
THA.LOC104821459 Tarenaya hassleriana HOM05D003929 ORTHO05D004499 2.4e-117 426.8 517 53.2
Aa31LG11G880 Aethionema arabicum HOM05D003929 ORTHO05D004499 5.4e-117 425.6 532 48.5
Lj5C124G9 Lonicera japonica HOM05D003929 ORTHO05D004499 4.6e-116 422.5 527 52.8
arahy.Tifrunner.gnm1.ann1.R24CC5 Arachis hypogaea HOM05D003929 ORTHO05D004499 7.8e-116 421.8 535 49.5
AL8G39770 Arabidopsis lyrata HOM05D003929 ORTHO05D004499 1.0e-115 421.4 523 48.8
Hund09434 Selenicereus undatus HOM05D003929 ORTHO05D004499 2.3e-115 420.2 508 53.0
arahy.Tifrunner.gnm1.ann1.S02CG0 Arachis hypogaea HOM05D003929 ORTHO05D004499 3.0e-115 419.9 535 48.4
Thhalv10004017m.g Eutrema salsugineum HOM05D003929 ORTHO05D004499 6.6e-115 418.7 529 48.2
Nn1g01975 Nelumbo nucifera HOM05D003929 ORTHO05D004499 8.6e-115 418.3 521 51.6
AT5G62810 Arabidopsis thaliana HOM05D003929 ORTHO05D004499 1.1e-114 417.9 522 48.1
Migut.I00015 Erythranthe guttata HOM05D003929 ORTHO05D004499 1.1e-114 417.9 520 54.4
Carub.0008s2353 Capsella rubella HOM05D003929 ORTHO05D004499 3.3e-114 416.4 524 48.1
VMungo1215G1851 Vigna mungo HOM05D003929 ORTHO05D004499 3.3e-114 416.4 517 52.2
Ciclev10024320m.g Citrus clementina HOM05D003929 ORTHO05D004499 7.3e-114 415.2 397 62.5
BcaB02g09694 Brassica carinata HOM05D003929 ORTHO05D004499 9.5e-114 414.8 518 48.5
A06p29570 Brassica napus HOM05D003929 ORTHO05D004499 1.2e-113 414.5 504 48.6
BraA06t25903Z Brassica rapa HOM05D003929 ORTHO05D004499 1.2e-113 414.5 504 48.8
Glyma.17G089700 Glycine max HOM05D003929 ORTHO05D004499 1.2e-113 414.5 518 51.4
C03p63930 Brassica napus HOM05D003929 ORTHO05D004499 3.6e-113 412.9 523 47.8
Nitab4.5_0009783g0030 Nicotiana tabacum HOM05D003929 ORTHO05D004499 4.7e-113 412.5 526 48.7
BcaC01g02523 Brassica carinata HOM05D003929 ORTHO05D004499 8.1e-113 411.8 523 47.6
THA.LOC104818232 Tarenaya hassleriana HOM05D003929 ORTHO05D004499 1.8e-112 410.6 528 50.2
BolC9t53798H Brassica oleracea HOM05D003929 ORTHO05D004499 2.3e-112 410.2 525 47.8
C09p08860 Brassica napus HOM05D003929 ORTHO05D004499 4.0e-112 409.5 525 47.8
BolC3t18647H Brassica oleracea HOM05D003929 ORTHO05D004499 4.0e-112 409.5 525 47.6
Lj1g0005514 Lotus japonicus HOM05D003929 ORTHO05D004499 5.2e-112 409.1 519 50.9
CsaV3_1G001520 Cucumis sativus L. HOM05D003929 ORTHO05D004499 6.8e-112 408.7 517 52.8
BcaC04g23392 Brassica carinata HOM05D003929 ORTHO05D004499 1.2e-111 407.9 525 47.6
Glyma.05G037400 Glycine max HOM05D003929 ORTHO05D004499 1.5e-111 407.5 522 49.2
MELO3C026291.2 Cucumis melo HOM05D003929 ORTHO05D004499 5.8e-111 405.6 510 52.5
A09p07860 Brassica napus HOM05D003929 ORTHO05D004499 1.3e-110 404.4 523 47.6
BraA09t36437Z Brassica rapa HOM05D003929 ORTHO05D004499 3.7e-110 402.9 521 47.6
PSO832G4520 Papaver somniferum HOM05D003929 ORTHO05D004499 6.6e-107 392.1 543 49.2
CARHR276590 Cardamine hirsuta HOM05D003929 ORTHO05D004499 5.6e-106 389.0 516 45.7
Hma1.2p1_0000F.1_g000890 Hydrangea macrophylla HOM05D003929 ORTHO05D004499 8.1e-105 385.2 511 50.1
Peaxi162Scf00689g00222 Petunia axillaris HOM05D003929 ORTHO05D004499 2.4e-104 383.6 514 46.9
EL10Ac5g10751 Beta vulgaris HOM05D003929 ORTHO05D004499 6.8e-104 382.1 509 49.5
Lalb_Chr11g0071231 Lupinus albus HOM05D003929 ORTHO05D004499 8.4e-102 375.2 478 49.0
Lalb_Chr07g0182721 Lupinus albus HOM05D003929 ORTHO05D004499 1.4e-101 374.4 518 48.3
Actinidia19318 Actinidia chinensis HOM05D003929 ORTHO05D004499 1.9e-101 374.0 422 53.6
Nitab4.5_0007719g0020 Nicotiana tabacum HOM05D003929 ORTHO05D004499 4.2e-101 372.9 516 48.6
arahy.Tifrunner.gnm1.ann1.W2DQVT Arachis hypogaea HOM05D003929 ORTHO05D004499 1.0e-99 368.2 555 46.5
MBI10_g41915_MAGBIO Magnolia biondii HOM05D003929 ORTHO05D004499 1.7e-99 367.5 518 49.2
Solyc03g114330.3 Solanum lycopersicum HOM05D003929 ORTHO05D004499 3.6e-97 359.8 507 47.1
Psat4g057880 Pisum sativum HOM05D003929 ORTHO05D004499 2.4e-96 357.1 361 55.4
SalBow5G2758 Salvia bowleyana HOM05D003929 ORTHO05D004499 8.4e-94 348.6 515 44.1
Sc04g0001820 Simmondsia chinensis HOM05D003929 ORTHO05D004499 2.4e-93 347.1 343 61.2
COL.COLO4_30035 Corchorus olitorius HOM05D003929 ORTHO05D004499 3.2e-93 346.7 522 44.8
Ah.11g051630 Amaranthus hybridus HOM05D003618 ORTHO05D004302 4.2e-93 346.3 521 44.5
Nitab4.5_0000003g0590 Nicotiana tabacum HOM05D003929 ORTHO05D004499 2.1e-92 344.0 513 42.7
SGA_v2.0_scaffold90G27941 Striga asiatica HOM05D003929 ORTHO05D004499 4.6e-92 342.8 514 45.1
Actinidia33066 Actinidia chinensis HOM05D003929 ORTHO05D004499 3.0e-91 340.1 452 50.7
Sed0009068 Sechium edule HOM05D003929 ORTHO05D004499 1.1e-88 331.6 360 58.3
Sopen03g033430 Solanum pennellii HOM05D003929 ORTHO05D004499 2.2e-86 323.9 507 45.2
Migut.D01928 Erythranthe guttata HOM05D003929 ORTHO05D004499 1.8e-80 304.3 494 43.1
ATR0730G040 Amborella trichopoda HOM05D003929 ORTHO05D004499 9.0e-80 302.0 554 41.5
AUR62030967 Chenopodium quinoa HOM05D003929 ORTHO05D004499 6.4e-78 295.8 514 42.6
Atru.chr11.2035 Acer truncatum HOM05D003929 ORTHO05D004499 1.6e-76 291.2 463 42.3
HPP92_021833 Vanilla planifolia HOM05D003929 ORTHO05D004499 1.9e-74 284.3 384 49.5
SEGI_11105 Sequoiadendron giganteum HOM05D003929 ORTHO05D004499 1.3e-73 281.6 517 39.5
CDE05G2632 Ceratophyllum demersum HOM05D003929 ORTHO05D004499 1.6e-73 281.2 492 41.9
CDE11G0983 Ceratophyllum demersum HOM05D003929 ORTHO05D004499 1.7e-70 271.2 481 39.9
AUR62008214 Chenopodium quinoa HOM05D003929 ORTHO05D004499 2.7e-68 263.8 515 40.8
unitig_749.g13474 Utricularia gibba HOM05D003929 ORTHO05D004499 3.9e-67 260.0 406 41.4
Oeu024692.2 Olea europaea HOM05D003929 ORTHO05D004499 2.2e-65 254.2 280 58.6
CSS0023375 Camellia sinensis var. sinensis HOM05D003929 ORTHO05D004499 2.4e-64 250.8 251 62.5
Thecc.02G250700 Theobroma cacao HOM05D003929 ORTHO05D004499 8.5e-62 242.3 408 40.9
COL.COLO4_24172 Corchorus olitorius HOM05D003929 ORTHO05D004499 1.8e-59 234.6 409 40.1
Oeu022163.1 Olea europaea HOM05D003929 ORTHO05D004499 7.4e-58 229.2 284 47.5
Gohir.A03G139300 Gossypium hirsutum HOM05D003929 ORTHO05D004499 2.6e-55 220.7 394 37.3
Psat4g209200 Pisum sativum HOM05D003929 ORTHO05D004499 4.5e-55 219.9 315 45.4
Gohir.D02G162200 Gossypium hirsutum HOM05D003929 ORTHO05D004499 2.9e-54 217.2 394 37.3
Gorai.005G182200 Gossypium raimondii HOM05D003929 ORTHO05D004499 1.4e-53 214.9 394 37.3
Lj9A449T48 Lonicera japonica HOM05D003929 ORTHO05D004499 5.5e-53 213.0 236 53.0
Zm00001eb356320 Zea mays HOM05D003929 ORTHO05D004499 9.4e-53 212.2 480 35.4
Hund02741 Selenicereus undatus HOM05D003929 ORTHO05D004499 1.1e-50 205.3 468 38.5
Zm00001eb267680 Zea mays HOM05D003929 ORTHO05D004499 3.5e-47 193.7 488 34.8
Cfa019127 Carpinus fangiana HOM05D003929 ORTHO05D004499 1.4e-45 188.3 185 57.8
Os05g0101200 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 1.4e-40 171.8 541 32.0
Mapoly0102s0017 Marchantia polymorpha HOM05D003929 ORTHO05D004499 5.9e-39 166.4 509 32.4
arahy.Tifrunner.gnm1.ann1.49JIZL Arachis hypogaea HOM05D003929 ORTHO05D004499 8.5e-38 162.5 248 46.4
Zm00001eb126680 Zea mays HOM05D003929 ORTHO05D004499 3.1e-32 144.1 462 29.4
HanXRQChr16g0526511 Helianthus annuus HOM05D004647 ORTHO05D005349 1.0e-30 139.0 196 50.0
FAN24G3310 Fragaria x ananassa HOM05D003929 ORTHO05D004499 3.8e-30 137.1 279 38.7
Pp3c9_20380 Physcomitrium patens HOM05D003929 ORTHO05D004499 1.9e-29 134.8 218 41.7
PSO135G0191 Papaver somniferum HOM05D003929 ORTHO05D004499 5.5e-29 133.3 196 45.9
PGR044G1312 Punica granatum HOM05D003929 ORTHO05D004499 9.4e-29 132.5 173 44.5
Os01g0107000 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 1.6e-28 131.7 222 39.2
Pp3c15_21860 Physcomitrium patens HOM05D003929 ORTHO05D004499 8.0e-28 129.4 231 37.2
CBR_g3508 Chara braunii HOM05D003929 ORTHO05D004499 4.4e-26 123.6 321 34.6
Actinidia19319 Actinidia chinensis HOM05D003618 ORTHO05D004302 1.2e-23 115.5 265 40.4
PGSC0003DMG400024502 Solanum tuberosum HOM05D003929 ORTHO05D004499 1.0e-22 112.5 108 63.0
SHI17029 Sapria himalayana HOM05D003929 ORTHO05D004499 2.3e-22 111.3 145 46.2
AagrBONN_evm.TU.Sc2ySwM_117.2261 Anthoceros agrestis HOM05D003929 ORTHO05D004499 5.0e-22 110.2 182 44.5
Lj9A449G50 Lonicera japonica HOM05D003929 ORTHO05D004499 1.4e-19 102.1 176 40.9
SHI17030 Sapria himalayana HOM05D003929 ORTHO05D004499 8.9e-19 99.4 76 64.5
Nitab4.5_0000866g0190 Nicotiana tabacum HOM05D003929 ORTHO05D004499 1.2e-18 99.0 121 51.2
ClCG01G013120 Citrullus lanatus HOM05D003929 ORTHO05D004499 1.1e-16 92.4 115 42.6
CBR_g10793 Chara braunii HOM05D027206 ORTHO05D004499 4.0e-11 73.9 85 48.2
CBR_g3506 Chara braunii HOM05D003929 ORTHO05D004499 4.0e-11 73.9 64 54.7
Os05g0578000 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 1.5e-10 72.0 94 41.5
Cre10.g454025 Chlamydomonas reinhardtii HOM05D003929 ORTHO05D004499 4.4e-10 70.5 119 46.2
MCO04G191 Micromonas commoda HOM05D003929 ORTHO05D004499 6.4e-09 66.6 401 22.4
Zm00001eb296750 Zea mays HOM05D003929 ORTHO05D004499 1.4e-08 65.5 67 50.7
SHI17025 Sapria himalayana HOM05D003929 ORTHO05D004499 3.0e-06 57.8 44 61.4


User provided reference genes

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