Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B00248 Eucalyptus grandis HOM05D004430 ORTHO05D005088 0.0e+00 3021.5 1560 100.0
Atru.chr9.2519 Acer truncatum HOM05D004430 ORTHO05D005088 1.4e-301 1040.4 1677 44.6
Dinv20629 Davidia involucrata HOM05D004430 ORTHO05D005088 3.1e-301 1039.3 1607 45.0
Thecc.03G018800 Theobroma cacao HOM05D004430 ORTHO05D005088 1.1e-290 1004.2 1592 45.4
COL.COLO4_30100 Corchorus olitorius HOM05D004430 ORTHO05D005088 7.1e-282 974.9 1637 44.2
Dinv38562 Davidia involucrata HOM05D004430 ORTHO05D005088 2.1e-281 973.4 1704 42.2
Prupe.5G170400 Prunus persica HOM05D004430 ORTHO05D005088 4.3e-279 965.7 1696 42.6
PGR083G1025 Punica granatum HOM05D004430 ORTHO05D005088 9.6e-279 964.5 1621 44.3
Gorai.005G135600 Gossypium raimondii HOM05D004430 ORTHO05D005088 2.6e-276 956.4 1627 44.1
GSVIVG01007703001 Vitis vinifera HOM05D004430 ORTHO05D005088 3.4e-276 956.1 1599 44.6
QL10p008934 Quercus lobata HOM05D004430 ORTHO05D005088 4.5e-276 955.7 1624 43.8
Gohir.D02G117900 Gossypium hirsutum HOM05D004430 ORTHO05D005088 1.0e-275 954.5 1627 44.1
Gohir.A03G089900 Gossypium hirsutum HOM05D004430 ORTHO05D005088 2.5e-274 949.9 1619 43.7
CSS0010843 Camellia sinensis var. sinensis HOM05D004430 ORTHO05D005088 1.4e-269 934.1 1607 42.6
Potri.015G079800 Populus trichocarpa HOM05D004430 ORTHO05D005088 1.4e-269 934.1 1620 42.3
MD06G1170800 Malus domestica HOM05D004430 ORTHO05D005088 1.3e-267 927.5 1625 42.5
Duzib084G1065 Durio zibethinus HOM05D004430 ORTHO05D005088 1.1e-266 924.5 1636 43.0
TWI14G0761 Tripterygium wilfordii HOM05D004430 ORTHO05D005088 3.2e-266 922.9 1608 41.7
Duzib205G1695 Durio zibethinus HOM05D004430 ORTHO05D005088 1.8e-264 917.1 1619 43.4
TWI39G0976 Tripterygium wilfordii HOM05D004430 ORTHO05D005088 4.5e-260 902.5 1617 41.5
RcHm_v2.0_Chr7g0193171 Rosa chinensis HOM05D004430 ORTHO05D005088 7.7e-260 901.7 1627 42.0
Glyma.17G087600 Glycine max HOM05D004430 ORTHO05D005088 3.2e-258 896.3 1608 41.9
Sabra15G0104100 Salix brachista HOM05D004430 ORTHO05D005088 3.9e-256 889.4 1603 40.8
MD14G1176500 Malus domestica HOM05D004430 ORTHO05D005088 2.6e-255 886.7 1623 42.0
Manes.06G107200 Manihot esculenta HOM05D004430 ORTHO05D005088 9.7e-255 884.8 1666 41.6
Lj4g0003819 Lotus japonicus HOM05D004430 ORTHO05D005088 4.1e-253 879.4 1628 42.0
Lj9C446G12 Lonicera japonica HOM05D004430 ORTHO05D005088 3.6e-249 866.3 1613 41.2
Manes.06G107300 Manihot esculenta HOM05D004430 ORTHO05D005088 3.6e-249 866.3 1672 41.0
Duzib068G0887 Durio zibethinus HOM05D004430 ORTHO05D005088 4.7e-249 865.9 1620 40.8
Lalb_Chr07g0182821 Lupinus albus HOM05D004430 ORTHO05D005088 7.9e-249 865.1 1629 41.6
Lalb_Chr12g0201701 Lupinus albus HOM05D004430 ORTHO05D005088 2.0e-247 860.5 1620 41.0
arahy.Tifrunner.gnm1.ann1.FBBL0Z Arachis hypogaea HOM05D004430 ORTHO05D005088 9.7e-247 858.2 1616 41.1
Potri.012G088500 Populus trichocarpa HOM05D004430 ORTHO05D005088 3.7e-246 856.3 1621 40.8
Sabra12G0063700 Salix brachista HOM05D004430 ORTHO05D005088 7.0e-245 852.0 1672 40.1
FAN13G0016 Fragaria x ananassa HOM05D004430 ORTHO05D005088 1.5e-242 844.3 1626 40.3
FvH4_5g05640 Fragaria vesca HOM05D004430 ORTHO05D005088 3.2e-242 843.2 1630 39.8
Lalb_Chr13g0297721 Lupinus albus HOM05D004430 ORTHO05D005088 8.5e-235 818.5 1588 40.6
FAN18G2048 Fragaria x ananassa HOM05D004430 ORTHO05D005088 4.7e-233 812.8 1622 38.9
FAN08G1542 Fragaria x ananassa HOM05D004430 ORTHO05D005088 8.0e-233 812.0 1633 39.1
FAN18G1146 Fragaria x ananassa HOM05D004430 ORTHO05D005088 3.7e-230 803.1 1627 38.7
VMungo1215G2998 Vigna mungo HOM05D004430 ORTHO05D005088 6.3e-230 802.4 1659 39.5
Glyma.05G039400 Glycine max HOM05D004430 ORTHO05D005088 1.4e-229 801.2 1599 38.8
vmacro19413 Vaccinium macrocarpon HOM05D004430 ORTHO05D005088 4.5e-228 796.2 1636 39.5
FAN04G2171 Fragaria x ananassa HOM05D004430 ORTHO05D005088 1.5e-226 791.2 1629 38.9
ClCG06G017130 Citrullus lanatus HOM05D004430 ORTHO05D005088 7.0e-221 772.3 1619 38.7
TPR.G28716 Trifolium pratense HOM05D004430 ORTHO05D005088 7.0e-221 772.3 1598 39.4
TAR374G1038 Trochodendron aralioides HOM05D004430 ORTHO05D005088 1.1e-218 765.0 1673 37.7
AUR62028764 Chenopodium quinoa HOM05D004430 ORTHO05D005088 2.5e-218 763.8 1621 38.4
CANSAT80G0620 Cannabis sativa HOM05D004430 ORTHO05D005088 4.0e-216 756.5 1639 39.1
MELO3C026283.2 Cucumis melo HOM05D004430 ORTHO05D005088 1.7e-211 741.1 1613 38.4
CsaV3_1G001360 Cucumis sativus L. HOM05D004430 ORTHO05D005088 1.7e-211 741.1 1609 38.0
Sed0016557 Sechium edule HOM05D004430 ORTHO05D005088 1.1e-210 738.4 1603 38.9
Ca_16155_v3 Cicer arietinum L. HOM05D004430 ORTHO05D005088 5.6e-210 736.1 1603 38.9
Rhsim08G0174600 Rhododendron simsii HOM05D004430 ORTHO05D005088 1.8e-208 731.1 1622 38.0
Ca_16154_v3 Cicer arietinum L. HOM05D004430 ORTHO05D005088 2.0e-207 727.6 1613 38.7
Nitab4.5_0003229g0080 Nicotiana tabacum HOM05D004430 ORTHO05D005088 1.7e-206 724.5 1610 37.0
Ciclev10018497m.g Citrus clementina HOM05D004430 ORTHO05D005088 4.1e-205 719.9 1405 40.8
AUR62008183 Chenopodium quinoa HOM05D004430 ORTHO05D005088 5.4e-205 719.5 1606 37.5
CiPaw.11G023400 Carya illinoinensis HOM05D004430 ORTHO05D005088 6.0e-204 716.1 1542 37.4
Nitab4.5_0001207g0060 Nicotiana tabacum HOM05D004430 ORTHO05D005088 6.6e-203 712.6 1646 36.3
Phvul.003G202300 Phaseolus vulgaris HOM05D004430 ORTHO05D005088 8.6e-203 712.2 1660 36.7
Sed0007760 Sechium edule HOM05D004430 ORTHO05D005088 1.1e-200 705.3 1600 37.1
Oeu036008.4 Olea europaea HOM05D004430 ORTHO05D005088 8.3e-198 695.7 1588 36.5
Medtr3g077440 Medicago truncatula HOM05D004430 ORTHO05D005088 1.4e-197 694.9 1623 37.5
Solyc03g112660.3 Solanum lycopersicum HOM05D004430 ORTHO05D005088 7.8e-196 689.1 1635 36.3
Oeu024704.1 Olea europaea HOM05D004430 ORTHO05D005088 3.0e-195 687.2 1660 35.5
Sopen03g031740 Solanum pennellii HOM05D004430 ORTHO05D005088 6.6e-195 686.0 1645 36.7
Cc04_g12380 Coffea canephora HOM05D004430 ORTHO05D005088 2.5e-194 684.1 1302 40.1
Nn3g16781 Nelumbo nucifera HOM05D004430 ORTHO05D005088 2.3e-187 661.0 1673 35.1
THA.LOC104809247 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 2.5e-186 657.5 1595 35.8
SalBow6G6763 Salvia bowleyana HOM05D004430 ORTHO05D005088 6.2e-185 652.9 1634 37.0
Peaxi162Scf00089g00174 Petunia axillaris HOM05D004430 ORTHO05D005088 3.1e-184 650.6 1637 34.9
SalBow6G6905 Salvia bowleyana HOM05D004430 ORTHO05D005088 6.9e-184 649.4 1637 36.9
EL10Ac5g10708 Beta vulgaris HOM05D004430 ORTHO05D005088 4.2e-181 640.2 1604 35.8
Migut.D01964 Erythranthe guttata HOM05D004430 ORTHO05D005088 4.2e-181 640.2 1639 35.9
THA.LOC104809778 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 9.6e-178 629.0 1606 35.6
CiPaw.12G028500 Carya illinoinensis HOM05D004430 ORTHO05D005088 2.1e-177 627.9 1400 37.1
Sc04g0001690 Simmondsia chinensis HOM05D004430 ORTHO05D005088 2.0e-175 621.3 1577 36.4
Hund02762 Selenicereus undatus HOM05D004430 ORTHO05D005088 1.4e-173 615.1 1594 35.5
Ah.11g051460 Amaranthus hybridus HOM05D004430 ORTHO05D005088 1.1e-165 589.0 1616 34.5
Actinidia19338 Actinidia chinensis HOM05D004430 ORTHO05D005088 2.7e-164 584.3 1241 37.7
CAN.G1166.22 Capsicum annuum HOM05D004430 ORTHO05D005088 3.5e-164 583.9 1644 33.6
MSTRG.4361 Avicennia marina HOM05D004430 ORTHO05D005088 1.1e-162 578.9 1632 34.6
Aqoxy3G01105 Aquilegia oxysepala HOM05D004430 ORTHO05D005088 2.5e-162 577.8 1671 35.8
TPR.G28721 Trifolium pratense HOM05D004430 ORTHO05D005088 2.1e-161 574.7 1591 34.9
CARHR232060 Cardamine hirsuta HOM05D004430 ORTHO05D005088 1.6e-156 558.5 1613 34.4
Medtr3g077450 Medicago truncatula HOM05D004430 ORTHO05D005088 2.7e-156 557.8 1596 34.1
Psat5g115080 Pisum sativum HOM05D004430 ORTHO05D005088 6.7e-155 553.1 1602 33.5
ECA232G4503 Erigeron canadensis HOM05D004430 ORTHO05D005088 8.7e-155 552.7 1595 34.9
AT4G24680 Arabidopsis thaliana HOM05D004430 ORTHO05D005088 2.1e-153 548.1 1591 34.4
Psat5g115040 Pisum sativum HOM05D004430 ORTHO05D005088 2.8e-153 547.7 1600 33.5
Sp7g22670 Schrenkiella parvula HOM05D004430 ORTHO05D005088 1.3e-150 538.9 1611 33.5
MBI19_g24062_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 6.5e-150 536.6 1735 32.8
AL7G28520 Arabidopsis lyrata HOM05D004430 ORTHO05D005088 2.7e-148 531.2 1578 34.1
BraA03t14619Z Brassica rapa HOM05D004430 ORTHO05D005088 8.7e-147 526.2 1604 34.0
A03p55450 Brassica napus HOM05D004430 ORTHO05D005088 2.5e-146 524.6 1599 34.0
Carub.0007s1638 Capsella rubella HOM05D004430 ORTHO05D005088 3.7e-145 520.8 1594 33.2
C07p53740 Brassica napus HOM05D004430 ORTHO05D005088 3.4e-143 514.2 1581 33.9
Aa31LG4G9770 Aethionema arabicum HOM05D004430 ORTHO05D005088 1.0e-142 512.7 1582 32.4
BolC7t45865H Brassica oleracea HOM05D004430 ORTHO05D005088 1.9e-141 508.4 1586 33.7
PSO017G2086 Papaver somniferum HOM05D004430 ORTHO05D005088 1.2e-140 505.8 1744 31.9
Thhalv10024213m.g Eutrema salsugineum HOM05D004430 ORTHO05D005088 7.9e-140 503.1 1640 32.3
PSO478G3312 Papaver somniferum HOM05D004430 ORTHO05D005088 3.9e-139 500.7 1741 32.1
C01p20010 Brassica napus HOM05D004430 ORTHO05D005088 1.5e-138 498.8 1598 32.6
Thhalv10024214m.g Eutrema salsugineum HOM05D004430 ORTHO05D005088 7.4e-138 496.5 1625 32.6
A01p16020 Brassica napus HOM05D004430 ORTHO05D005088 7.9e-132 476.5 1600 32.3
Lsat_1_v5_gn_4_75700 Lactuca sativa HOM05D004430 ORTHO05D005088 1.1e-130 472.6 1586 33.3
BraA01t01536Z Brassica rapa HOM05D004430 ORTHO05D005088 5.7e-130 470.3 1616 31.8
HanXRQChr17g0548691 Helianthus annuus HOM05D004430 ORTHO05D005088 5.7e-130 470.3 1462 34.1
BolC1t01928H Brassica oleracea HOM05D004430 ORTHO05D005088 3.7e-129 467.6 1590 32.1
PGSC0003DMG402018164 Solanum tuberosum HOM05D004430 ORTHO05D005088 7.7e-127 459.9 1397 32.9
BcaC06g32869 Brassica carinata HOM05D004430 ORTHO05D005088 1.9e-125 455.3 1600 32.2
arahy.Tifrunner.gnm1.ann1.I95HTR Arachis hypogaea HOM05D004430 ORTHO05D005088 4.2e-125 454.1 771 41.6
SGA_v2.0_scaffold7G04148 Striga asiatica HOM05D004430 ORTHO05D005088 2.1e-124 451.8 1570 32.0
BcaC09g50842 Brassica carinata HOM05D004430 ORTHO05D005088 4.1e-120 437.6 1583 31.5
Hma1.2p1_0046F.1_g026730 Hydrangea macrophylla HOM05D004430 ORTHO05D005088 3.2e-117 427.9 1224 36.4
HanXRQChr11g0348291 Helianthus annuus HOM05D004430 ORTHO05D005088 4.5e-111 407.5 608 46.7
TAR622G0490 Trochodendron aralioides HOM05D004430 ORTHO05D005088 8.0e-108 396.7 977 35.2
unitig_37.g12744 Utricularia gibba HOM05D004430 ORTHO05D005088 8.0e-108 396.7 1597 30.3
BcaB03g12441 Brassica carinata HOM05D004430 ORTHO05D005088 7.5e-106 390.2 1599 29.3
ATR0757G157 Amborella trichopoda HOM05D004430 ORTHO05D005088 3.7e-105 387.9 1669 30.1
Haze_07543 Corylus avellana HOM05D004430 ORTHO05D005088 7.8e-95 353.6 1578 28.2
Actinidia19112 Actinidia chinensis HOM05D004430 ORTHO05D005088 2.0e-87 328.9 334 60.8
Zm00001eb028710 Zea mays HOM05D004430 ORTHO05D005088 8.1e-84 317.0 1533 29.2
Actinidia33085 Actinidia chinensis HOM05D004430 ORTHO05D005088 5.2e-83 314.3 690 36.4
Zm00001eb136860 Zea mays HOM05D004430 ORTHO05D005088 8.9e-83 313.5 1638 28.1
MBI10_g44386_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 6.0e-79 300.8 1485 28.6
CDE06G0437 Ceratophyllum demersum HOM05D004430 ORTHO05D005088 1.2e-71 276.6 1457 28.4
Actinidia19110 Actinidia chinensis HOM05D005107 ORTHO05D006200 3.2e-64 251.9 478 36.2
Cpa.g.sc153.6 Carica papaya HOM05D004430 ORTHO05D005088 4.0e-59 235.0 193 72.5
MBI10_g44384_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 1.3e-57 229.9 201 69.2
CDE02G0036 Ceratophyllum demersum HOM05D004430 ORTHO05D005088 7.1e-56 224.2 217 62.2
SHI17143 Sapria himalayana HOM05D004430 ORTHO05D005088 1.1e-53 216.9 669 33.6
HPP92_024337 Vanilla planifolia HOM05D004430 ORTHO05D005088 5.6e-53 214.5 1308 27.8
SEGI_40513 Sequoiadendron giganteum HOM05D004430 ORTHO05D005088 4.2e-48 198.4 1840 24.8
HPP92_006251 Vanilla planifolia HOM05D004430 ORTHO05D005088 1.2e-47 196.8 1477 26.4
unitig_46.g18473 Utricularia gibba HOM05D004430 ORTHO05D007989 2.0e-42 179.5 1539 25.1
HPP92_006241 Vanilla planifolia HOM05D004430 ORTHO05D005088 4.5e-42 178.3 215 57.7
Actinidia19111 Actinidia chinensis HOM05D004430 ORTHO05D005088 6.7e-38 164.5 490 33.7
Pp3c4_23740 Physcomitrium patens HOM05D004430 ORTHO05D005088 1.2e-34 153.7 1527 25.1
HPP92_024330 Vanilla planifolia HOM05D004430 ORTHO05D005088 1.5e-29 136.7 1305 24.9
Actinidia33086 Actinidia chinensis HOM05D004430 ORTHO05D005088 4.8e-28 131.7 379 34.0
Pp3c26_2830 Physcomitrium patens HOM05D004430 ORTHO05D005088 5.5e-24 118.2 1533 24.8
TAR622G0342 Trochodendron aralioides HOM05D004430 ORTHO05D005088 1.8e-22 113.2 87 70.1
SMO174G0145 Selaginella moellendorffii HOM05D004430 ORTHO05D005088 1.3e-20 107.1 836 25.5
Pp3c26_2670 Physcomitrium patens HOM05D004430 ORTHO05D005088 2.8e-20 105.9 234 41.0
Psat2g086200 Pisum sativum HOM05D004430 ORTHO05D005088 6.3e-20 104.8 223 39.0
Pp3c4_22960 Physcomitrium patens HOM05D004430 ORTHO05D005088 8.2e-20 104.4 1375 24.7
Psat2g086240 Pisum sativum HOM05D004430 ORTHO05D005088 1.2e-18 100.5 247 36.8
Psat2g098600 Pisum sativum HOM05D003093 ORTHO05D005088 5.5e-16 91.7 168 39.9
Mapoly0057s0099 Marchantia polymorpha HOM05D004430 ORTHO05D005088 1.4e-14 87.0 1582 24.0
THA.LOC104822199 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 2.0e-13 83.2 204 32.8
TAR629G1829 Trochodendron aralioides HOM05D003072 ORTHO05D008464 1.3e-12 80.5 155 39.4
CBR_g19277 Chara braunii HOM05D004430 ORTHO05D005088 3.7e-12 79.0 581 28.7
SHI23780 Sapria himalayana HOM05D004430 ORTHO05D005088 1.7e-09 70.1 107 52.3
THA.LOC104816711 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 1.7e-09 70.1 231 27.3
Psat1g046400 Pisum sativum HOM05D004430 ORTHO05D005088 3.8e-09 68.9 168 35.7
TAR622G0951 Trochodendron aralioides HOM05D004430 ORTHO05D005088 1.9e-08 66.6 139 34.5
Actinidia19337 Actinidia chinensis HOM05D004430 ORTHO05D005088 7.2e-08 64.7 163 32.5


User provided reference genes

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