Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B00167 Eucalyptus grandis HOM05D006000 ORTHO05D007749 0.0e+00 1331.6 652 100.0
PGR083G2177 Punica granatum HOM05D006000 ORTHO05D007749 1.1e-279 966.5 654 70.8
MD14G1166100 Malus domestica HOM05D006000 ORTHO05D007749 4.2e-260 901.4 653 67.2
MD06G1160100 Malus domestica HOM05D006000 ORTHO05D007749 5.5e-260 901.0 653 67.5
RcHm_v2.0_Chr7g0191691 Rosa chinensis HOM05D006000 ORTHO05D007749 7.1e-260 900.6 653 68.1
GSVIVG01007577001 Vitis vinifera HOM05D006000 ORTHO05D007749 6.0e-259 897.5 654 67.4
Prupe.5G160400 Prunus persica HOM05D006000 ORTHO05D007749 2.8e-256 888.6 652 66.6
Cfa018908 Carpinus fangiana HOM05D006000 ORTHO05D007749 1.8e-255 885.9 652 67.5
TWI39G0152 Tripterygium wilfordii HOM05D006000 ORTHO05D007749 1.4e-252 876.3 654 66.1
Haze_07292 Corylus avellana HOM05D006000 ORTHO05D007749 5.5e-252 874.4 679 64.9
FvH4_5g06990 Fragaria vesca HOM05D006000 ORTHO05D007749 7.9e-251 870.5 654 65.4
QL10p005632 Quercus lobata HOM05D006000 ORTHO05D007749 1.9e-249 865.9 654 65.7
FAN08G3509 Fragaria x ananassa HOM05D006000 ORTHO05D007749 1.3e-248 863.2 657 65.3
FAN18G3028 Fragaria x ananassa HOM05D006000 ORTHO05D007749 3.7e-248 861.7 653 65.1
Gorai.003G108600 Gossypium raimondii HOM05D006000 ORTHO05D007749 1.8e-247 859.4 649 64.7
CANSAT80G1864 Cannabis sativa HOM05D006000 ORTHO05D007749 5.3e-247 857.8 653 63.1
Gohir.A03G063200 Gossypium hirsutum HOM05D006000 ORTHO05D007749 1.2e-246 856.7 648 64.7
CSS0006429 Camellia sinensis var. sinensis HOM05D006000 ORTHO05D007749 4.5e-246 854.7 651 65.0
CSS0019701 Camellia sinensis var. sinensis HOM05D006000 ORTHO05D007749 1.7e-245 852.8 651 65.1
ClCG03G003330 Citrullus lanatus HOM05D006000 ORTHO05D007749 1.9e-244 849.4 647 63.5
THA.LOC104818202 Tarenaya hassleriana HOM05D006000 ORTHO05D007749 8.8e-242 840.5 649 64.3
Hund05620 Selenicereus undatus HOM05D006000 ORTHO05D007749 2.0e-241 839.3 650 62.8
Thhalv10010185m.g Eutrema salsugineum HOM05D006000 ORTHO05D007749 2.4e-239 832.4 657 63.2
Sed0018918 Sechium edule HOM05D006000 ORTHO05D007749 2.4e-239 832.4 647 62.9
Lj9C473G6 Lonicera japonica HOM05D006000 ORTHO05D007749 3.1e-239 832.0 652 63.8
Ciclev10024180m.g Citrus clementina HOM05D006000 ORTHO05D007749 5.3e-239 831.2 648 63.7
Manes.06G113400 Manihot esculenta HOM05D006000 ORTHO05D007749 4.5e-238 828.2 654 63.0
TAR622G0802 Trochodendron aralioides HOM05D006000 ORTHO05D007749 5.9e-238 827.8 649 63.8
AT3G48380 Arabidopsis thaliana HOM05D006000 ORTHO05D007749 1.3e-237 826.6 653 62.9
BcaC07g39322 Brassica carinata HOM05D006000 ORTHO05D007749 1.4e-236 823.2 654 62.5
Carub.0005s1454 Capsella rubella HOM05D006000 ORTHO05D007749 4.2e-236 821.6 653 62.6
C08p23370 Brassica napus HOM05D006000 ORTHO05D007749 3.6e-235 818.5 655 62.4
Aa31LG4G16970 Aethionema arabicum HOM05D006000 ORTHO05D007749 4.7e-235 818.1 653 62.6
Sp5g13670 Schrenkiella parvula HOM05D006000 ORTHO05D007749 1.0e-234 817.0 654 62.1
FAN04G1552 Fragaria x ananassa HOM05D006000 ORTHO05D007749 1.4e-234 816.6 654 63.0
CARHR157150 Cardamine hirsuta HOM05D006000 ORTHO05D007749 3.0e-234 815.5 653 62.3
AL5G27780 Arabidopsis lyrata HOM05D006000 ORTHO05D007749 6.7e-234 814.3 653 62.5
CsaV3_1G009140 Cucumis sativus L. HOM05D006000 ORTHO05D007749 8.8e-234 813.9 647 61.2
BcaB01g00818 Brassica carinata HOM05D006000 ORTHO05D007749 1.1e-233 813.5 655 62.4
Nitab4.5_0001360g0160 Nicotiana tabacum HOM05D006000 ORTHO05D007749 5.7e-233 811.2 650 61.7
Sc10g0010320 Simmondsia chinensis HOM05D006000 ORTHO05D007749 1.3e-232 810.1 661 61.6
PGSC0003DMG400015231 Solanum tuberosum HOM05D006000 ORTHO05D007749 2.2e-232 809.3 652 62.4
BolC8t49966H Brassica oleracea HOM05D006000 ORTHO05D007749 6.3e-232 807.7 666 61.3
EL10Ac7g18048 Beta vulgaris HOM05D006000 ORTHO05D007749 1.4e-231 806.6 650 61.5
A06p19300 Brassica napus HOM05D006000 ORTHO05D007749 1.4e-231 806.6 656 61.9
Sopen03g030780 Solanum pennellii HOM05D006000 ORTHO05D007749 1.4e-231 806.6 652 62.1
Oeu053502.2 Olea europaea HOM05D006000 ORTHO05D007749 4.1e-231 805.1 658 61.4
Thecc.03G120400 Theobroma cacao HOM05D006000 ORTHO05D007749 7.0e-231 804.3 647 61.8
MELO3C002321.2 Cucumis melo HOM05D006000 ORTHO05D007749 4.5e-230 801.6 653 60.9
Nitab4.5_0006717g0030 Nicotiana tabacum HOM05D006000 ORTHO05D007749 4.5e-230 801.6 651 61.3
PSO782G4995 Papaver somniferum HOM05D006000 ORTHO05D007749 4.5e-230 801.6 650 59.8
Solyc03g111660.3 Solanum lycopersicum HOM05D006000 ORTHO05D007749 4.5e-230 801.6 655 62.0
vmacro16696 Vaccinium macrocarpon HOM05D006000 ORTHO05D007749 1.0e-229 800.4 653 61.7
Gohir.D03G103100 Gossypium hirsutum HOM05D006000 ORTHO05D007749 3.8e-229 798.5 615 63.7
CAN.G472.50 Capsicum annuum HOM05D006000 ORTHO05D007749 1.5e-228 796.6 652 61.7
Psat5g139520 Pisum sativum HOM05D006000 ORTHO05D007749 7.2e-228 794.3 649 61.8
BraA06t25013Z Brassica rapa HOM05D006000 ORTHO05D007749 9.4e-228 793.9 667 60.6
AUR62001257 Chenopodium quinoa HOM05D006000 ORTHO05D007749 1.0e-226 790.4 650 60.8
Migut.D02037 Erythranthe guttata HOM05D006000 ORTHO05D007749 6.7e-226 787.7 657 60.0
Sabra15G0111200 Salix brachista HOM05D006000 ORTHO05D007749 1.3e-224 783.5 620 63.9
Cc04_g10700 Coffea canephora HOM05D006000 ORTHO05D007749 3.7e-224 781.9 660 58.5
Phvul.009G170100 Phaseolus vulgaris HOM05D006000 ORTHO05D007749 8.2e-224 780.8 651 61.0
arahy.Tifrunner.gnm1.ann1.9XY5HM Arachis hypogaea HOM05D006000 ORTHO05D007749 1.6e-222 776.5 652 60.7
Glyma.06G174400 Glycine max HOM05D006000 ORTHO05D007749 1.6e-222 776.5 651 60.8
VMungo1309G2614 Vigna mungo HOM05D006000 ORTHO05D007749 3.5e-222 775.4 655 61.4
Ca_16102_v3 Cicer arietinum L. HOM05D006000 ORTHO05D007749 4.5e-222 775.0 654 61.2
Ca_30078_v3 Cicer arietinum L. HOM05D006000 ORTHO05D007749 4.5e-222 775.0 654 61.2
CiPaw.12G034200 Carya illinoinensis HOM05D006000 ORTHO05D007749 7.7e-222 774.2 537 68.7
Peaxi162Scf00089g00935 Petunia axillaris HOM05D006000 ORTHO05D007749 1.3e-221 773.5 651 59.9
Glyma.04G191400 Glycine max HOM05D006000 ORTHO05D007749 1.7e-221 773.1 651 61.1
HanXRQChr05g0156141 Helianthus annuus HOM05D006000 ORTHO05D007749 1.7e-221 773.1 651 60.5
Rhsim12G0171000 Rhododendron simsii HOM05D006000 ORTHO05D007749 1.7e-221 773.1 614 62.2
MSTRG.4336 Avicennia marina HOM05D006000 ORTHO05D007749 2.9e-221 772.3 655 59.4
Lsat_1_v5_gn_5_13060 Lactuca sativa HOM05D006000 ORTHO05D007749 6.5e-221 771.2 649 60.7
Lalb_Chr11g0069771 Lupinus albus HOM05D006000 ORTHO05D007749 1.5e-220 770.0 643 60.8
arahy.Tifrunner.gnm1.ann1.1AQ6ST Arachis hypogaea HOM05D006000 ORTHO05D007749 2.5e-220 769.2 635 61.3
Medtr3g075250 Medicago truncatula HOM05D006000 ORTHO05D007749 7.2e-220 767.7 651 60.5
Lj1g0007517 Lotus japonicus HOM05D006000 ORTHO05D007749 2.3e-218 762.7 656 60.4
ECA246G4586 Erigeron canadensis HOM05D006000 ORTHO05D007749 1.2e-217 760.4 659 58.6
CDE09G0792 Ceratophyllum demersum HOM05D006000 ORTHO05D007749 5.9e-214 748.0 649 58.2
HPP92_027096 Vanilla planifolia HOM05D006000 ORTHO05D007749 4.4e-209 731.9 649 55.5
ATR0824G112 Amborella trichopoda HOM05D006000 ORTHO05D007749 1.4e-207 726.9 654 57.3
Ah.15g095430 Amaranthus hybridus HOM05D006000 ORTHO05D007749 1.7e-205 719.9 649 56.4
Os12g0285500 Oryza sativa ssp. japonica HOM05D006000 ORTHO05D007749 7.0e-199 698.0 650 54.0
TPR.G38611 Trifolium pratense HOM05D006000 ORTHO05D007749 1.6e-195 686.8 690 55.2
Nn4g22511 Nelumbo nucifera HOM05D006000 ORTHO05D007749 2.0e-193 679.9 578 59.9
HPP92_021434 Vanilla planifolia HOM05D006000 ORTHO05D007749 1.1e-183 647.5 592 54.2
Actinidia08849 Actinidia chinensis HOM05D006000 ORTHO05D007749 1.4e-178 630.6 620 54.7
Zm00001eb133430 Zea mays HOM05D006000 ORTHO05D007749 6.6e-173 611.7 689 48.5
Dinv11120 Davidia involucrata HOM05D006000 ORTHO05D007749 1.5e-172 610.5 487 61.6
Atru.chr9.985 Acer truncatum HOM05D006000 ORTHO05D007749 1.1e-170 604.4 508 58.5
Actinidia36773 Actinidia chinensis HOM05D006000 ORTHO05D007749 1.8e-170 603.6 575 55.3
SGA_v2.0_scaffold7G04178 Striga asiatica HOM05D006000 ORTHO05D007749 2.3e-157 560.1 660 47.0
Dinv12561 Davidia involucrata HOM05D006000 ORTHO05D007749 1.2e-150 537.7 591 48.9
Mapoly0004s0201 Marchantia polymorpha HOM05D006000 ORTHO05D007749 6.2e-147 525.4 655 45.2
Potri.015G088200 Populus trichocarpa HOM05D006000 ORTHO05D007749 3.4e-137 493.0 474 53.8
SMO201G0062 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 2.1e-134 483.8 649 43.0
Pp3c6_16550 Physcomitrium patens HOM05D006000 ORTHO05D007749 1.3e-131 474.6 632 43.4
DCAR_016428 Daucus carota HOM05D006000 ORTHO05D007749 9.7e-124 448.4 254 83.1
SalBow8G1380 Salvia bowleyana HOM05D006000 ORTHO05D007749 7.2e-119 432.2 555 45.9
CBR_g41805 Chara braunii HOM05D006000 ORTHO05D007749 7.0e-114 415.6 386 52.3
unitig_21.g20436 Utricularia gibba HOM05D006000 ORTHO05D007749 1.2e-94 351.7 484 42.4
AagrBONN_evm.TU.Sc2ySwM_362.2604 Anthoceros agrestis HOM05D006000 ORTHO05D007749 6.1e-94 349.4 648 36.7
Cre03.g197900 Chlamydomonas reinhardtii HOM05D006000 ORTHO05D007749 1.0e-93 348.6 411 46.2
Cpa.g.sc4.40 Carica papaya HOM05D006000 ORTHO05D007749 1.2e-92 345.1 359 51.3
unitig_21.g20435 Utricularia gibba HOM05D006000 ORTHO05D007749 3.7e-91 340.1 178 86.5
arahy.Tifrunner.gnm1.ann1.HVEI7F Arachis hypogaea HOM05D006000 ORTHO05D007749 4.9e-91 339.7 307 58.0
DCAR_016429 Daucus carota HOM05D006000 ORTHO05D007749 1.6e-86 324.7 424 41.3
HPP92_021417 Vanilla planifolia HOM05D006000 ORTHO05D007749 5.0e-80 303.1 197 73.1
FvH4_5g06921 Fragaria vesca HOM05D006000 ORTHO05D007749 1.3e-64 251.9 275 48.4
Cpa.g.sc4.27 Carica papaya HOM05D006000 ORTHO05D008793 1.6e-54 218.4 198 59.1
SalBow8G5300 Salvia bowleyana HOM05D006000 ORTHO05D007749 5.2e-53 213.4 104 92.3
Cpa.g.sc4.41 Carica papaya HOM05D006000 ORTHO05D007749 3.8e-51 207.2 106 85.8
FvH4_5g06950 Fragaria vesca HOM05D006000 ORTHO05D007749 7.6e-44 183.0 230 44.3
FvH4_5g06930 Fragaria vesca HOM05D006000 ORTHO05D007749 1.4e-34 152.1 137 58.4
PRCOL_00005175 Prasinoderma coloniale HOM05D006000 ORTHO05D007749 2.4e-34 151.4 200 40.5
SMO201G0174 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 7.1e-34 149.8 178 44.9
arahy.Tifrunner.gnm1.ann1.1X7LEL Arachis hypogaea HOM05D000074 ORTHO05D007749 3.8e-27 127.5 497 28.0
TAR622G0554 Trochodendron aralioides HOM05D006000 ORTHO05D007749 3.8e-27 127.5 153 46.4
CAN.G546.38 Capsicum annuum HOM05D006000 ORTHO05D007749 6.5e-27 126.7 86 70.9
SGA_v2.0_scaffold115G32113 Striga asiatica HOM05D005956 ORTHO05D007197 7.9e-25 119.8 58 86.2
SMO328G0007 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 5.1e-24 117.1 83 65.1
Nitab4.5_0001094g0140 Nicotiana tabacum HOM05D006000 ORTHO05D007749 2.1e-22 111.7 150 40.7
FvH4_5g06922 Fragaria vesca HOM05D006000 ORTHO05D007749 3.1e-21 107.8 74 64.9
arahy.Tifrunner.gnm1.ann1.0Z5YS0 Arachis hypogaea HOM05D001248 ORTHO05D007749 6.1e-17 93.6 72 61.1
Lsat_1_v5_gn_4_166800 Lactuca sativa HOM05D006000 ORTHO05D018009 5.1e-16 90.5 76 60.5
Lsat_1_v5_gn_3_61521 Lactuca sativa HOM05D006000 ORTHO05D018009 8.7e-16 89.7 74 62.2
Lsat_1_v5_gn_4_154121 Lactuca sativa HOM05D006000 ORTHO05D018009 1.1e-15 89.4 74 60.8
Lsat_1_v5_gn_2_53660 Lactuca sativa HOM05D003480 ORTHO05D018009 4.3e-15 87.4 74 60.8
Lsat_1_v5_gn_4_114361 Lactuca sativa HOM05D003480 ORTHO05D018009 5.7e-15 87.0 74 59.5
Lsat_1_v5_gn_6_19961 Lactuca sativa HOM05D003480 ORTHO05D018009 3.7e-14 84.3 74 59.5
CAN.G1014.24 Capsicum annuum HOM05D000846 ORTHO05D028464 3.8e-11 74.3 93 47.3
CAN.G755.4 Capsicum annuum HOM05D006000 ORTHO05D028464 1.1e-10 72.8 75 52.0


User provided reference genes

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