Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B00148 Eucalyptus grandis HOM05D005223 ORTHO05D006449 0.0e+00 1722.2 889 100.0
Eucgr.L01337 Eucalyptus grandis HOM05D005223 ORTHO05D006449 0.0e+00 1545.0 1039 80.9
QL10p005060 Quercus lobata HOM05D005223 ORTHO05D006449 1.8e-282 976.1 1026 53.4
Atru.chr9.1012 Acer truncatum HOM05D005223 ORTHO05D006449 9.0e-282 973.8 1029 53.0
Cfa018892 Carpinus fangiana HOM05D005223 ORTHO05D006449 1.5e-281 973.0 1027 53.5
Haze_07276 Corylus avellana HOM05D005223 ORTHO05D006449 6.5e-280 967.6 1023 53.5
PGR083G1937 Punica granatum HOM05D005223 ORTHO05D006449 3.2e-279 965.3 1044 54.1
MD14G1163600 Malus domestica HOM05D005223 ORTHO05D006449 2.1e-278 962.6 1023 53.2
Gohir.D07G057900 Gossypium hirsutum HOM05D005223 ORTHO05D006449 3.1e-274 948.7 1024 52.5
Gohir.A07G053500 Gossypium hirsutum HOM05D005223 ORTHO05D006449 2.0e-273 946.0 1024 52.8
Gorai.001G061400 Gossypium raimondii HOM05D005223 ORTHO05D006449 2.6e-273 945.7 1024 52.4
Prupe.5G157000 Prunus persica HOM05D005223 ORTHO05D006449 1.4e-271 939.9 1024 52.1
Thecc.03G122800 Theobroma cacao HOM05D005223 ORTHO05D006449 1.8e-269 932.9 1023 52.0
TWI14G1297 Tripterygium wilfordii HOM05D005223 ORTHO05D006449 3.0e-269 932.2 1035 52.5
GSVIVG01007540001 Vitis vinifera HOM05D005223 ORTHO05D006449 3.0e-269 932.2 1058 50.0
Dinv38469 Davidia involucrata HOM05D005223 ORTHO05D006449 2.6e-268 929.1 1005 51.6
RcHm_v2.0_Chr7g0191161 Rosa chinensis HOM05D005223 ORTHO05D006449 1.3e-267 926.8 1023 51.4
Ciclev10018616m.g Citrus clementina HOM05D005223 ORTHO05D006449 1.4e-266 923.3 1024 51.5
FAN18G3380 Fragaria x ananassa HOM05D005223 ORTHO05D006449 8.5e-264 914.1 1024 51.3
CANSAT80G2773 Cannabis sativa HOM05D005223 ORTHO05D006449 3.2e-263 912.1 1026 51.0
FAN04G2946 Fragaria x ananassa HOM05D005223 ORTHO05D006449 7.2e-263 911.0 1024 51.1
FvH4_5g07490 Fragaria vesca HOM05D005223 ORTHO05D006449 4.7e-262 908.3 1024 51.2
CSS0037650 Camellia sinensis var. sinensis HOM05D005223 ORTHO05D006449 1.8e-261 906.4 1030 50.7
FAN13G2650 Fragaria x ananassa HOM05D005223 ORTHO05D006449 2.3e-261 906.0 1029 51.0
Potri.015G090700 Populus trichocarpa HOM05D005223 ORTHO05D006449 4.4e-260 901.7 1028 51.5
Lj9C475T6 Lonicera japonica HOM05D005223 ORTHO05D006449 2.8e-259 899.0 1046 48.9
ClCG03G003490 Citrullus lanatus HOM05D005223 ORTHO05D006449 3.7e-259 898.7 1023 48.9
CsaV3_1G009290 Cucumis sativus L. HOM05D005223 ORTHO05D006449 5.5e-255 884.8 1023 48.3
Manes.06G115300 Manihot esculenta HOM05D005223 ORTHO05D006449 2.1e-254 882.9 1024 49.3
Ca_16089_v3 Cicer arietinum L. HOM05D005223 ORTHO05D006449 2.7e-254 882.5 1025 49.1
TAR629G2346 Trochodendron aralioides HOM05D005223 ORTHO05D006449 4.7e-254 881.7 1018 49.9
Sed0011232 Sechium edule HOM05D005223 ORTHO05D006449 1.4e-253 880.2 1023 48.4
MELO3C002332.2 Cucumis melo HOM05D005223 ORTHO05D006449 8.8e-253 877.5 1023 47.9
Glyma.04G193000 Glycine max HOM05D005223 ORTHO05D006449 1.7e-251 873.2 1021 48.9
Hma1.2p1_0123F.1_g058130 Hydrangea macrophylla HOM05D005223 ORTHO05D006449 1.7e-251 873.2 1027 48.7
VMungo1309G0017 Vigna mungo HOM05D005223 ORTHO05D006449 1.7e-251 873.2 1025 48.7
Sabra15G0112800 Salix brachista HOM05D005223 ORTHO05D000001 1.1e-250 870.5 997 51.0
Phvul.009G168800 Phaseolus vulgaris HOM05D005223 ORTHO05D006449 1.4e-250 870.2 1026 49.3
Lj1g0000662 Lotus japonicus HOM05D005223 ORTHO05D006449 2.4e-250 869.4 1026 48.8
Medtr3g075100 Medicago truncatula HOM05D005223 ORTHO05D006449 3.5e-249 865.5 1026 48.0
Lalb_Chr08g0236961 Lupinus albus HOM05D005223 ORTHO05D006449 3.6e-246 855.5 1024 47.9
CiPaw.12G035700 Carya illinoinensis HOM05D005223 ORTHO05D006449 8.0e-246 854.4 788 58.4
vmacro19239 Vaccinium macrocarpon HOM05D005223 ORTHO05D006449 2.3e-245 852.8 1061 47.8
TPR.G13978 Trifolium pratense HOM05D005223 ORTHO05D006449 1.5e-244 850.1 1029 47.7
Nn4g22461 Nelumbo nucifera HOM05D005223 ORTHO05D006449 4.4e-244 848.6 1031 49.3
Duzib084G0239 Durio zibethinus HOM05D005223 ORTHO05D006449 9.8e-244 847.4 1024 49.2
arahy.Tifrunner.gnm1.ann1.D4E4RT Arachis hypogaea HOM05D005223 ORTHO05D006449 1.9e-239 833.2 1060 46.4
PGSC0003DMG400025026 Solanum tuberosum HOM05D005223 ORTHO05D006449 7.2e-239 831.2 1021 47.3
AL5G27880 Arabidopsis lyrata HOM05D005223 ORTHO05D006449 3.6e-238 828.9 1026 47.4
Aqoxy5G03583 Aquilegia oxysepala HOM05D005223 ORTHO05D006449 8.0e-238 827.8 1029 46.6
Solyc10g006780.4 Solanum lycopersicum HOM05D005223 ORTHO05D006449 3.0e-237 825.9 1022 46.7
HanXRQChr05g0154741 Helianthus annuus HOM05D005223 ORTHO05D006449 2.0e-236 823.2 1021 45.6
Carub.0005s1465 Capsella rubella HOM05D005223 ORTHO05D006449 3.4e-236 822.4 1021 46.8
Sopen10g002700 Solanum pennellii HOM05D005223 ORTHO05D006449 9.8e-236 820.8 1023 46.9
Nitab4.5_0000955g0070 Nicotiana tabacum HOM05D005223 ORTHO05D006449 2.2e-235 819.7 1028 47.2
SGA_v2.0_scaffold457G51932 Striga asiatica HOM05D005223 ORTHO05D006449 9.2e-234 814.3 1025 47.2
Nitab4.5_0002775g0020 Nicotiana tabacum HOM05D005223 ORTHO05D006449 1.0e-232 810.8 1027 46.9
AT3G48470 Arabidopsis thaliana HOM05D005223 ORTHO05D006449 2.9e-232 809.3 1027 46.3
Cc04_g10370 Coffea canephora HOM05D005223 ORTHO05D006449 3.9e-232 808.9 1023 46.2
CAN.G1110.40 Capsicum annuum HOM05D005223 ORTHO05D006449 6.6e-232 808.1 1026 46.0
THA.LOC104818196 Tarenaya hassleriana HOM05D005223 ORTHO05D006449 9.5e-231 804.3 1029 45.6
ECA246G2102 Erigeron canadensis HOM05D005223 ORTHO05D006449 3.6e-230 802.4 1024 45.8
MSTRG.11293 Avicennia marina HOM05D005223 ORTHO05D006449 6.1e-230 801.6 1018 46.8
DCAR_021603 Daucus carota HOM05D005223 ORTHO05D006449 8.0e-230 801.2 1018 46.1
CARHR157230 Cardamine hirsuta HOM05D005223 ORTHO05D006449 5.2e-229 798.5 1026 45.7
Sp5g13560 Schrenkiella parvula HOM05D005223 ORTHO05D006449 1.5e-228 797.0 1023 45.8
C03p66340 Brassica napus HOM05D005223 ORTHO05D006449 4.1e-226 788.9 1026 45.6
BcaC01g02344 Brassica carinata HOM05D005223 ORTHO05D006449 3.5e-225 785.8 1026 45.6
PSO063G1058 Papaver somniferum HOM05D005223 ORTHO05D006449 1.3e-224 783.9 1024 45.4
Sc10g0010350 Simmondsia chinensis HOM05D005223 ORTHO05D006449 1.7e-224 783.5 968 46.8
BraA06t25704Z Brassica rapa HOM05D005223 ORTHO05D006449 3.9e-224 782.3 1027 45.8
BcaB02g10650 Brassica carinata HOM05D005223 ORTHO05D006449 1.1e-223 780.8 1030 45.4
Migut.I00475 Erythranthe guttata HOM05D005223 ORTHO05D006449 1.1e-223 780.8 1016 44.4
Psat5g141880 Pisum sativum HOM05D005223 ORTHO05D006449 1.9e-223 780.0 788 53.4
A06p27680 Brassica napus HOM05D005223 ORTHO05D006449 1.8e-221 773.5 1028 45.5
BolC3t18905H Brassica oleracea HOM05D005223 ORTHO05D006449 3.1e-221 772.7 1046 44.6
Lsat_1_v5_gn_5_13240 Lactuca sativa HOM05D005223 ORTHO05D006449 2.0e-220 770.0 996 45.9
Rhsim08G0185000 Rhododendron simsii HOM05D005223 ORTHO05D006449 2.0e-220 770.0 794 53.1
Peaxi162Scf00536g00422 Petunia axillaris HOM05D005223 ORTHO05D006449 4.9e-219 765.4 1018 45.3
SalBow5G2547 Salvia bowleyana HOM05D005223 ORTHO05D006449 2.8e-214 749.6 1060 42.2
AUR62001278 Chenopodium quinoa HOM05D005223 ORTHO05D006449 6.4e-211 738.4 1035 44.9
AUR62025728 Chenopodium quinoa HOM05D005223 ORTHO05D006449 3.2e-210 736.1 1044 44.8
COL.COLO4_09267 Corchorus olitorius HOM05D005223 ORTHO05D006449 3.5e-209 732.6 845 50.8
ATR0824G104 Amborella trichopoda HOM05D005223 ORTHO05D006449 5.1e-208 728.8 1030 43.7
Hund18539 Selenicereus undatus HOM05D005223 ORTHO05D006449 1.5e-207 727.2 990 45.9
CDE02G2587 Ceratophyllum demersum HOM05D005223 ORTHO05D006449 6.8e-205 718.4 1037 42.1
EL10Ac7g18074 Beta vulgaris HOM05D005223 ORTHO05D006449 1.5e-204 717.2 1025 43.7
Thhalv10010098m.g Eutrema salsugineum HOM05D005223 ORTHO05D006449 3.0e-200 703.0 1027 42.6
Zm00001eb246300 Zea mays HOM05D005223 ORTHO05D006449 4.8e-190 669.1 1005 39.9
Os02g0598800 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 4.9e-187 659.1 1023 40.6
SGA_v2.0_scaffold50G18602 Striga asiatica HOM05D005223 ORTHO05D006449 4.6e-185 652.5 1028 42.5
arahy.Tifrunner.gnm1.ann1.9N92ER Arachis hypogaea HOM05D005223 ORTHO05D006449 1.8e-176 624.0 770 47.8
Glyma.06G172900 Glycine max HOM05D005223 ORTHO05D006449 4.3e-175 619.4 722 48.2
CSS0005553 Camellia sinensis var. sinensis HOM05D005223 ORTHO05D006449 2.2e-166 590.5 662 51.4
Actinidia19387 Actinidia chinensis HOM05D005223 ORTHO05D006449 5.9e-156 555.8 594 51.0
Cpa.g.sc52.35 Carica papaya HOM05D005223 ORTHO05D006449 7.5e-127 459.1 560 49.5
Aa31LG4G17060 Aethionema arabicum HOM05D005223 ORTHO05D006449 1.7e-123 448.0 616 45.1
Os02g0599100 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 9.8e-119 432.2 650 42.3
Os02g0598400 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 1.1e-117 428.7 649 42.2
Pp3c24_17160 Physcomitrium patens HOM05D005223 ORTHO05D006449 3.7e-94 350.5 1078 29.1
Mapoly0075s0016 Marchantia polymorpha HOM05D005223 ORTHO05D006449 9.2e-93 345.9 1097 29.8
SHI10647 Sapria himalayana HOM05D005223 ORTHO05D006449 1.2e-89 335.5 532 41.5
Oeu057221.1 Olea europaea HOM05D005223 ORTHO05D006449 8.7e-83 312.8 399 44.6
SMO367G0489 Selaginella moellendorffii HOM05D005223 ORTHO05D006449 2.2e-78 298.1 852 30.5
Cpa.g.sc52.34 Carica papaya HOM05D005223 ORTHO05D006449 2.9e-78 297.7 376 44.4
Aa31LG4G17050 Aethionema arabicum HOM05D005223 ORTHO05D006449 6.4e-78 296.6 431 40.6
FvH4_5g07461 Fragaria vesca HOM05D005223 ORTHO05D006449 2.4e-77 294.7 330 50.9
Oeu007006.1 Olea europaea HOM05D005223 ORTHO05D006449 1.7e-62 245.4 344 44.5
FvH4_3g25520 Fragaria vesca HOM05D005223 ORTHO05D006449 9.3e-53 213.0 252 46.4
CBR_g45764 Chara braunii HOM05D005223 ORTHO05D006449 6.1e-52 210.3 1130 23.7
MBI11_g36316_MAGBIO Magnolia biondii HOM05D005223 ORTHO05D006449 1.3e-49 202.6 236 49.6
FvH4_5g07361 Fragaria vesca HOM05D005223 ORTHO05D006449 2.2e-49 201.8 553 31.5
CBR_g52378 Chara braunii HOM05D005223 ORTHO05D006449 3.7e-49 201.1 945 25.3
MD06G1153900 Malus domestica HOM05D005223 ORTHO05D006449 1.2e-44 186.0 148 68.2
Nn8g40428 Nelumbo nucifera HOM05D005223 ORTHO05D006449 5.9e-39 167.2 133 63.2
FvH4_5g07460 Fragaria vesca HOM05D005223 ORTHO05D006449 1.9e-37 162.2 226 44.2
Lsat_1_v5_gn_0_22080 Lactuca sativa HOM05D005223 ORTHO05D006449 1.0e-27 129.8 145 44.8
QL10p005098 Quercus lobata HOM05D005223 ORTHO05D006449 2.3e-27 128.6 167 48.5
SEGI_02888 Sequoiadendron giganteum HOM05D005223 ORTHO05D006449 2.6e-26 125.2 234 35.5
SalBow5G3736 Salvia bowleyana HOM05D005223 ORTHO05D006449 1.0e-22 113.2 96 56.2
SEGI_05777 Sequoiadendron giganteum HOM05D005223 ORTHO05D006449 1.7e-22 112.5 157 39.5
SalBow1G2179 Salvia bowleyana HOM05D005223 ORTHO05D006449 2.0e-18 99.0 73 61.6
DCAR_016747 Daucus carota HOM05D000329 ORTHO05D006449 2.6e-18 98.6 208 32.7
SalBow1G1130 Salvia bowleyana HOM05D005223 ORTHO05D006449 7.5e-18 97.1 74 59.5
Nn3g20975 Nelumbo nucifera HOM05D005223 ORTHO05D006449 3.7e-17 94.7 102 52.0
ECA246G0437 Erigeron canadensis HOM05D005223 ORTHO05D006449 8.3e-17 93.6 220 34.5
RcHm_v2.0_Chr0c39g0503251 Rosa chinensis HOM05D005223 ORTHO05D006449 1.7e-14 85.9 69 56.5
RcHm_v2.0_Chr1g0339741 Rosa chinensis HOM05D005223 ORTHO05D006449 1.7e-14 85.9 72 58.3
RcHm_v2.0_Chr1g0353191 Rosa chinensis HOM05D005223 ORTHO05D006449 1.7e-14 85.9 69 56.5
HPP92_024695 Vanilla planifolia HOM05D005223 ORTHO05D006449 1.9e-13 82.4 149 41.6
AagrBONN_evm.TU.Sc2ySwM_228.970 Anthoceros agrestis HOM05D005223 ORTHO05D006449 5.5e-13 80.9 236 30.1
RcHm_v2.0_Chr4g0412201 Rosa chinensis HOM05D005223 ORTHO05D006449 9.5e-13 80.1 72 55.6
Nn7g38107 Nelumbo nucifera HOM05D005223 ORTHO05D006449 4.7e-12 77.8 68 57.4
Actinidia25613 Actinidia chinensis HOM05D005223 ORTHO05D006449 2.3e-11 75.5 63 54.0
Cre03.g186550 Chlamydomonas reinhardtii HOM05D005223 ORTHO05D006449 2.6e-10 72.0 145 37.9
MD00G1179800 Malus domestica HOM05D005223 ORTHO05D006449 2.7e-07 62.0 52 61.5


User provided reference genes

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