Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B00147 Eucalyptus grandis HOM05D003199 ORTHO05D003528 1.3e-54 216.9 182 100.0
Eucgr.L01336 Eucalyptus grandis HOM05D003199 ORTHO05D003528 5.2e-51 204.9 183 97.8
CANSAT64G0211 Cannabis sativa HOM05D003199 ORTHO05D003528 1.6e-20 103.6 181 54.1
MSTRG.3260 Avicennia marina HOM05D003199 ORTHO05D003528 5.3e-19 98.6 85 54.1
Prupe.3G305100 Prunus persica HOM05D003199 ORTHO05D003528 6.9e-19 98.2 135 44.4
Manes.15G159800 Manihot esculenta HOM05D003199 ORTHO05D003528 1.2e-18 97.4 138 60.9
Manes.17G103700 Manihot esculenta HOM05D003199 ORTHO05D003528 2.0e-18 96.7 136 77.9
Oeu011963.1 Olea europaea HOM05D003199 ORTHO05D003528 2.0e-18 96.7 148 65.5
Haze_14863 Corylus avellana HOM05D003199 ORTHO05D003528 5.8e-18 95.1 132 65.9
Oeu011754.1 Olea europaea HOM05D003199 ORTHO05D003528 5.8e-18 95.1 141 39.7
Cfa007237 Carpinus fangiana HOM05D003199 ORTHO05D003528 7.6e-18 94.7 183 61.2
Gohir.A09G035300 Gossypium hirsutum HOM05D003199 ORTHO05D003528 7.6e-18 94.7 64 68.8
Gohir.D09G036100 Gossypium hirsutum HOM05D003199 ORTHO05D003528 7.6e-18 94.7 64 68.8
Gorai.006G041200 Gossypium raimondii HOM05D003199 ORTHO05D003528 7.6e-18 94.7 64 68.8
Phvul.004G054500 Phaseolus vulgaris HOM05D003199 ORTHO05D003528 7.6e-18 94.7 118 47.5
THA.LOC104825617 Tarenaya hassleriana HOM05D003199 ORTHO05D003528 7.6e-18 94.7 153 51.0
AUR62003498 Chenopodium quinoa HOM05D003199 ORTHO05D003528 9.9e-18 94.4 117 40.2
AUR62017813 Chenopodium quinoa HOM05D003199 ORTHO05D003528 9.9e-18 94.4 117 60.7
QL02p071628 Quercus lobata HOM05D003199 ORTHO05D003528 9.9e-18 94.4 189 61.9
CiPaw.03G054500 Carya illinoinensis HOM05D003199 ORTHO05D003528 1.3e-17 94.0 188 61.7
Cpa.g.sc1017.1 Carica papaya HOM05D003199 ORTHO05D003528 2.2e-17 93.2 123 60.2
Thecc.04G034700 Theobroma cacao HOM05D003199 ORTHO05D003528 2.9e-17 92.8 127 80.3
Ciclev10016867m.g Citrus clementina HOM05D003199 ORTHO05D003528 3.8e-17 92.4 81 56.8
Cc07_g00740 Coffea canephora HOM05D003199 ORTHO05D003528 3.8e-17 92.4 135 52.6
Lsat_1_v5_gn_2_94161 Lactuca sativa HOM05D003199 ORTHO05D003528 3.8e-17 92.4 119 47.1
PGR142G2189 Punica granatum HOM05D003199 ORTHO05D003528 3.8e-17 92.4 121 45.5
Oeu011964.1 Olea europaea HOM05D003199 ORTHO05D003528 4.9e-17 92.0 85 54.1
RcHm_v2.0_Chr2g0175441 Rosa chinensis HOM05D003199 ORTHO05D003528 4.9e-17 92.0 185 46.5
SalBow4G2736 Salvia bowleyana HOM05D003199 ORTHO05D003528 4.9e-17 92.0 92 54.3
CsaV3_3G027140 Cucumis sativus L. HOM05D003199 ORTHO05D003528 6.4e-17 91.7 82 57.3
Dinv33347 Davidia involucrata HOM05D003199 ORTHO05D003528 1.1e-16 90.9 70 67.1
Gohir.A05G339100 Gossypium hirsutum HOM05D003199 ORTHO05D003528 1.1e-16 90.9 117 49.6
Hma1.2p1_1278F.1_g272370 Hydrangea macrophylla HOM05D003199 ORTHO05D003528 1.1e-16 90.9 60 68.3
Ah.02g120420 Amaranthus hybridus HOM05D003199 ORTHO05D003528 1.4e-16 90.5 59 67.8
Eucgr.I01653 Eucalyptus grandis HOM05D003199 ORTHO05D003528 1.4e-16 90.5 138 41.3
arahy.Tifrunner.gnm1.ann1.S1U1UA Arachis hypogaea HOM05D003199 ORTHO05D003528 1.9e-16 90.1 53 75.5
CSS0036982 Camellia sinensis var. sinensis HOM05D003199 ORTHO05D003528 1.9e-16 90.1 59 69.5
ClCG05G013420 Citrullus lanatus HOM05D003199 ORTHO05D003528 1.9e-16 90.1 82 56.1
MELO3C014875.2 Cucumis melo HOM05D003199 ORTHO05D003528 1.9e-16 90.1 82 56.1
DCAR_002949 Daucus carota HOM05D003199 ORTHO05D003528 1.9e-16 90.1 84 54.8
Sed0014935 Sechium edule HOM05D003199 ORTHO05D003528 1.9e-16 90.1 58 70.7
CiPaw.04G036100 Carya illinoinensis HOM05D003199 ORTHO05D003528 2.4e-16 89.7 121 47.1
FAN05G2482 Fragaria x ananassa HOM05D003199 ORTHO05D003528 2.4e-16 89.7 186 46.2
Nn4g22460 Nelumbo nucifera HOM05D003199 ORTHO05D003528 2.4e-16 89.7 144 72.9
Duzib147G1480 Durio zibethinus HOM05D003199 ORTHO05D003528 3.2e-16 89.4 64 68.8
Potri.001G331600 Populus trichocarpa HOM05D003199 ORTHO05D003528 3.2e-16 89.4 60 68.3
BraA09t35967Z Brassica rapa HOM05D003199 ORTHO05D003528 4.2e-16 89.0 86 55.8
COL.COLO4_17189 Corchorus olitorius HOM05D003199 ORTHO05D003528 4.2e-16 89.0 117 77.8
arahy.Tifrunner.gnm1.ann1.NFT2PX Arachis hypogaea HOM05D003199 ORTHO05D003528 5.4e-16 88.6 61 67.2
arahy.Tifrunner.gnm1.ann1.Z1YI97 Arachis hypogaea HOM05D003199 ORTHO05D003528 5.4e-16 88.6 61 67.2
THA.LOC104823979 Tarenaya hassleriana HOM05D003199 ORTHO05D003528 5.4e-16 88.6 153 54.9
FAN14G1306 Fragaria x ananassa HOM05D003199 ORTHO05D003528 7.1e-16 88.2 186 45.7
Sabra16G0212600 Salix brachista HOM05D003199 ORTHO05D003528 7.1e-16 88.2 62 66.1
arahy.Tifrunner.gnm1.ann1.VRH5T3 Arachis hypogaea HOM05D003199 ORTHO05D003528 9.3e-16 87.8 121 50.4
CARHR148360 Cardamine hirsuta HOM05D003199 ORTHO05D003528 9.3e-16 87.8 88 50.0
FvH4_6g53290 Fragaria vesca HOM05D003199 ORTHO05D003528 9.3e-16 87.8 187 45.5
BcaC04g23918 Brassica carinata HOM05D003199 ORTHO05D003528 1.2e-15 87.4 86 57.0
C09p03490 Brassica napus HOM05D003199 ORTHO05D003528 1.2e-15 87.4 86 57.0
BolC9t53270H Brassica oleracea HOM05D003199 ORTHO05D003528 1.2e-15 87.4 86 57.0
CAN.G473.92 Capsicum annuum HOM05D003199 ORTHO05D003528 1.2e-15 87.4 53 71.7
FAN02G1758 Fragaria x ananassa HOM05D003199 ORTHO05D003528 1.2e-15 87.4 186 45.7
HanXRQChr07g0198271 Helianthus annuus HOM05D003199 ORTHO05D003528 1.2e-15 87.4 60 66.7
TAR622G0507 Trochodendron aralioides HOM05D003199 ORTHO05D003528 1.2e-15 87.4 68 61.8
Gohir.D04G077600 Gossypium hirsutum HOM05D003199 ORTHO05D003528 1.6e-15 87.0 117 48.7
Ah.03g147440 Amaranthus hybridus HOM05D003199 ORTHO05D003528 2.1e-15 86.7 59 62.7
A09p03290 Brassica napus HOM05D003199 ORTHO05D003528 2.1e-15 86.7 86 54.7
Atru.chr6.2549 Acer truncatum HOM05D003199 ORTHO05D003528 2.7e-15 86.3 123 76.4
Atru.chr6.2557 Acer truncatum HOM05D003199 ORTHO05D003528 2.7e-15 86.3 123 76.4
Gorai.012G087400 Gossypium raimondii HOM05D003199 ORTHO05D003528 2.7e-15 86.3 117 47.9
HanXRQChr14g0450701 Helianthus annuus HOM05D003199 ORTHO05D003528 2.7e-15 86.3 54 68.5
Lj4g0002784 Lotus japonicus HOM05D003199 ORTHO05D003528 2.7e-15 86.3 85 55.3
MD17G1012600 Malus domestica HOM05D003199 ORTHO05D003528 2.7e-15 86.3 157 37.6
VMungo0464G0590 Vigna mungo HOM05D003199 ORTHO05D003528 2.7e-15 86.3 129 43.4
Actinidia05917 Actinidia chinensis HOM05D003199 ORTHO05D003528 4.6e-15 85.5 124 75.0
EL10Ac6g15370 Beta vulgaris HOM05D003199 ORTHO05D003528 4.6e-15 85.5 54 68.5
BcaB04g19427 Brassica carinata HOM05D003199 ORTHO05D003528 4.6e-15 85.5 84 53.6
BraA02t08519Z Brassica rapa HOM05D003199 ORTHO05D003528 4.6e-15 85.5 86 53.5
Thhalv10004988m.g Eutrema salsugineum HOM05D003199 ORTHO05D003528 4.6e-15 85.5 87 51.7
PGR083G2021 Punica granatum HOM05D003199 ORTHO05D003528 4.6e-15 85.5 117 48.7
CiPaw.12G035800 Carya illinoinensis HOM05D003199 ORTHO05D003528 6.0e-15 85.1 91 53.8
Sc07g0004150 Simmondsia chinensis HOM05D003199 ORTHO05D003528 6.0e-15 85.1 192 45.8
Carub.0005s0539 Capsella rubella HOM05D003199 ORTHO05D003528 7.9e-15 84.7 88 52.3
Migut.F00072 Erythranthe guttata HOM05D003199 ORTHO05D003528 7.9e-15 84.7 80 51.2
Glyma.05G077200 Glycine max HOM05D003199 ORTHO05D003528 7.9e-15 84.7 75 53.3
Actinidia36194 Actinidia chinensis HOM05D003199 ORTHO05D003528 1.0e-14 84.3 123 74.8
BcaC03g17429 Brassica carinata HOM05D003199 ORTHO05D003528 1.0e-14 84.3 85 55.3
A02p35140 Brassica napus HOM05D003199 ORTHO05D003528 1.0e-14 84.3 123 47.2
C02p53770 Brassica napus HOM05D003199 ORTHO05D003528 1.0e-14 84.3 123 45.5
BolC2t11446H Brassica oleracea HOM05D003199 ORTHO05D003528 1.0e-14 84.3 85 55.3
Solyc02g068090.3 Solanum lycopersicum HOM05D003199 ORTHO05D003528 1.0e-14 84.3 54 66.7
Sopen02g017200 Solanum pennellii HOM05D003199 ORTHO05D003528 1.0e-14 84.3 54 66.7
PGSC0003DMG400006976 Solanum tuberosum HOM05D003199 ORTHO05D003528 1.0e-14 84.3 54 66.7
unitig_52.g17653 Utricularia gibba HOM05D003199 ORTHO05D003528 1.0e-14 84.3 53 69.8
Peaxi162Scf00420g00566 Petunia axillaris HOM05D003199 ORTHO05D003528 1.3e-14 84.0 53 69.8
TWI36G0480 Tripterygium wilfordii HOM05D003199 ORTHO05D003528 1.3e-14 84.0 64 64.1
TAR374G1096 Trochodendron aralioides HOM05D003199 ORTHO05D003528 1.3e-14 84.0 131 56.5
Dinv38468 Davidia involucrata HOM05D003199 ORTHO05D003528 1.8e-14 83.6 54 66.7
Sp2g16270 Schrenkiella parvula HOM05D003199 ORTHO05D003528 1.8e-14 83.6 87 50.6
BcaB07g30185 Brassica carinata HOM05D003199 ORTHO05D003528 2.3e-14 83.2 88 52.3
Prupe.5G156900 Prunus persica HOM05D003199 ORTHO05D003528 2.3e-14 83.2 70 60.0
QL10p005054 Quercus lobata HOM05D003199 ORTHO05D003528 2.3e-14 83.2 120 50.0
AL5G16270 Arabidopsis lyrata HOM05D003199 ORTHO05D003528 3.9e-14 82.4 88 48.9
AT3G27160 Arabidopsis thaliana HOM05D003199 ORTHO05D003528 3.9e-14 82.4 88 48.9
Lj2g0014633 Lotus japonicus HOM05D003199 ORTHO05D003528 3.9e-14 82.4 187 35.3
Duzib205G0007 Durio zibethinus HOM05D003199 ORTHO05D003528 6.7e-14 81.6 196 48.5
PSO063G5134 Papaver somniferum HOM05D003199 ORTHO05D003528 6.7e-14 81.6 147 49.7
Aqoxy5G03579 Aquilegia oxysepala HOM05D003199 ORTHO05D003528 8.7e-14 81.3 74 56.8
PSO782G3015 Papaver somniferum HOM05D003199 ORTHO05D003528 8.7e-14 81.3 118 58.5
Eucgr.J02332 Eucalyptus grandis HOM05D003199 ORTHO05D003528 1.1e-13 80.9 68 64.7
Hma1.2p1_0046F.1_g027530 Hydrangea macrophylla HOM05D003199 ORTHO05D003528 1.1e-13 80.9 122 42.6
Lalb_Chr02g0157721 Lupinus albus HOM05D003199 ORTHO05D003528 1.1e-13 80.9 49 73.5
Lalb_Chr24g0403341 Lupinus albus HOM05D003199 ORTHO05D003528 1.1e-13 80.9 118 39.8
Phvul.001G094500 Phaseolus vulgaris HOM05D003199 ORTHO05D003528 1.1e-13 80.9 121 43.8
Aa31LG2G5470 Aethionema arabicum HOM05D003199 ORTHO05D003528 1.5e-13 80.5 53 67.9
VMungo1383G1719 Vigna mungo HOM05D003199 ORTHO05D003528 1.5e-13 80.5 120 45.0
Glyma.19G090000 Glycine max HOM05D003199 ORTHO05D003528 2.5e-13 79.7 83 50.6
Gorai.001G061300 Gossypium raimondii HOM05D003199 ORTHO05D003528 3.3e-13 79.3 124 73.4
RcHm_v2.0_Chr2g0088911 Rosa chinensis HOM05D003199 ORTHO05D003528 3.3e-13 79.3 121 44.6
RcHm_v2.0_Chr2g0088961 Rosa chinensis HOM05D003199 ORTHO05D003528 3.3e-13 79.3 121 44.6
CAN.G1491.4 Capsicum annuum HOM05D003199 ORTHO05D003528 5.6e-13 78.6 50 68.0
Nitab4.5_0000040g0380 Nicotiana tabacum HOM05D003199 ORTHO05D003528 5.6e-13 78.6 53 66.0
Nitab4.5_0002911g0010 Nicotiana tabacum HOM05D003199 ORTHO05D003528 5.6e-13 78.6 53 66.0
MSTRG.4586 Avicennia marina HOM05D003199 ORTHO05D003528 7.4e-13 78.2 58 58.6
Gohir.D07G057800 Gossypium hirsutum HOM05D003199 ORTHO05D003528 9.6e-13 77.8 124 73.4
VMungo1215G0313 Vigna mungo HOM05D003199 ORTHO05D003528 9.6e-13 77.8 132 53.8
DCAR_026209 Daucus carota HOM05D003199 ORTHO05D003528 1.3e-12 77.4 54 63.0
Glyma.19G071300 Glycine max HOM05D003199 ORTHO05D003528 1.3e-12 77.4 53 62.3
Gohir.A07G053400 Gossypium hirsutum HOM05D003199 ORTHO05D003528 1.3e-12 77.4 61 60.7
RcHm_v2.0_Chr2g0089001 Rosa chinensis HOM05D003199 ORTHO05D003528 1.3e-12 77.4 121 43.8
Ca_14371_v3 Cicer arietinum L. HOM05D003199 ORTHO05D003528 1.6e-12 77.0 91 48.4
Glyma.17G181000 Glycine max HOM05D003199 ORTHO05D003528 1.6e-12 77.0 53 64.2
Lj1g0002355 Lotus japonicus HOM05D003199 ORTHO05D003528 2.1e-12 76.6 53 67.9
unitig_52.g17266 Utricularia gibba HOM05D000147 ORTHO05D001254 8.1e-12 74.7 54 61.1
Nn1g07337 Nelumbo nucifera HOM05D003199 ORTHO05D003528 1.4e-11 73.9 49 65.3
Thecc.03G122900 Theobroma cacao HOM05D003199 ORTHO05D003528 1.8e-11 73.6 127 43.3
Glyma.05G044800 Glycine max HOM05D003199 ORTHO05D003528 4.0e-11 72.4 63 54.0
Peaxi162Scf00881g00240 Petunia axillaris HOM05D003199 ORTHO05D003528 2.0e-10 70.1 59 59.3
TAR626G1428 Trochodendron aralioides HOM05D003199 ORTHO05D003528 2.6e-10 69.7 46 69.6
Migut.D01231 Erythranthe guttata HOM05D003199 ORTHO05D003528 3.4e-10 69.3 58 55.2
Peaxi162Scf00089g00228 Petunia axillaris HOM05D003199 ORTHO05D003528 3.4e-10 69.3 49 59.2
Nitab4.5_0005418g0050 Nicotiana tabacum HOM05D003199 ORTHO05D003528 4.5e-10 68.9 49 59.2
Nitab4.5_0010637g0020 Nicotiana tabacum HOM05D003199 ORTHO05D003528 4.5e-10 68.9 49 59.2
Sc04g0000960 Simmondsia chinensis HOM05D003199 ORTHO05D003528 4.5e-10 68.9 123 66.7
RcHm_v2.0_Chr7g0191151 Rosa chinensis HOM05D003199 ORTHO05D003528 1.3e-09 67.4 83 48.2
PGSC0003DMG400015257 Solanum tuberosum HOM05D003199 ORTHO05D003528 2.2e-09 66.6 49 57.1
FAN04G2235 Fragaria x ananassa HOM05D003199 ORTHO05D003528 2.9e-09 66.2 76 48.7
Lju41C52T19 Lonicera japonica HOM05D003199 ORTHO05D003528 2.9e-09 66.2 68 47.1
Solyc03g110930.3 Solanum lycopersicum HOM05D003199 ORTHO05D003528 2.9e-09 66.2 49 57.1
AagrBONN_evm.TU.Sc2ySwM_344.1902 Anthoceros agrestis HOM05D003199 ORTHO05D003528 4.9e-09 65.5 56 50.0
ECA246G3163 Erigeron canadensis HOM05D003199 ORTHO05D003528 6.4e-09 65.1 63 49.2
Medtr7g029325 Medicago truncatula HOM05D003199 ORTHO05D003528 6.4e-09 65.1 58 55.2
Sopen03g030120 Solanum pennellii HOM05D003199 ORTHO05D003528 8.4e-09 64.7 49 57.1
FvH4_5g07520 Fragaria vesca HOM05D003199 ORTHO05D003528 1.4e-08 63.9 50 58.0
MBI11_g19368_MAGBIO Magnolia biondii HOM05D003199 ORTHO05D003528 1.4e-08 63.9 146 63.0
MSTRG.15567 Avicennia marina HOM05D005860 ORTHO05D006977 1.9e-08 63.5 48 56.2
SalBow1G6303 Salvia bowleyana HOM05D003199 ORTHO05D003528 1.9e-08 63.5 55 54.5
Ciclev10022507m.g Citrus clementina HOM05D003199 ORTHO05D003528 2.4e-08 63.2 125 38.4
Pp3c10_22890 Physcomitrium patens HOM05D003199 ORTHO05D003528 2.4e-08 63.2 56 48.2
Pp3c20_22830 Physcomitrium patens HOM05D003199 ORTHO05D003528 2.4e-08 63.2 69 43.5
Potri.012G092700 Populus trichocarpa HOM05D003199 ORTHO05D003528 2.4e-08 63.2 110 36.4
FAN08G2398 Fragaria x ananassa HOM05D003199 ORTHO05D003528 3.2e-08 62.8 57 52.6
HanXRQChr05g0154721 Helianthus annuus HOM05D003199 ORTHO05D003528 3.2e-08 62.8 49 59.2
Pp3c23_14280 Physcomitrium patens HOM05D003199 ORTHO05D003528 4.2e-08 62.4 58 48.3
AagrBONN_evm.TU.Sc2ySwM_228.1446 Anthoceros agrestis HOM05D003199 ORTHO05D003528 5.5e-08 62.0 56 46.4
CDE12G0833 Ceratophyllum demersum HOM05D003199 ORTHO05D003528 5.5e-08 62.0 48 60.4
AUR62025727 Chenopodium quinoa HOM05D003199 ORTHO05D003528 5.5e-08 62.0 108 36.1
Aa31LG1G18700 Aethionema arabicum HOM05D003199 ORTHO05D003528 7.1e-08 61.6 52 55.8
Pp3c24_1550 Physcomitrium patens HOM05D003199 ORTHO05D003528 9.3e-08 61.2 79 40.5
Ca_05564_v3 Cicer arietinum L. HOM05D003199 ORTHO05D003528 1.2e-07 60.8 54 51.9
Lsat_1_v5_gn_5_13260 Lactuca sativa HOM05D003199 ORTHO05D003528 1.6e-07 60.5 69 43.5
Mapoly0066s0099 Marchantia polymorpha HOM05D003199 ORTHO05D003528 2.1e-07 60.1 49 55.1
Mapoly0090s0063 Marchantia polymorpha HOM05D003199 ORTHO05D003528 2.7e-07 59.7 49 49.0
vmacro23156 Vaccinium macrocarpon HOM05D003199 ORTHO05D003528 2.7e-07 59.7 52 57.7
AUR62001279 Chenopodium quinoa HOM05D003199 ORTHO05D003528 6.0e-07 58.5 108 34.3
Oeu044613.1 Olea europaea HOM05D003199 ORTHO05D003528 6.0e-07 58.5 46 56.5
Duzib187G1506 Durio zibethinus HOM05D003199 ORTHO05D003528 7.9e-07 58.2 45 64.4
EL10Ac7g18075 Beta vulgaris HOM05D003199 ORTHO05D003528 1.0e-06 57.8 45 64.4
CBR_g8368 Chara braunii HOM05D003199 ORTHO05D003528 1.3e-06 57.4 63 49.2
Actinidia36788 Actinidia chinensis HOM05D003199 ORTHO05D003528 3.9e-06 55.8 41 61.0
PGR083G2579 Punica granatum HOM05D003199 ORTHO05D003528 5.1e-06 55.5 42 59.5
TPR.G38327 Trifolium pratense HOM05D003199 ORTHO05D003528 5.1e-06 55.5 48 47.9
BcaC03g18193 Brassica carinata HOM05D003199 ORTHO05D003528 6.7e-06 55.1 52 53.8
C02p62560 Brassica napus HOM05D003199 ORTHO05D003528 6.7e-06 55.1 52 53.8
BolC2t12315H Brassica oleracea HOM05D003199 ORTHO05D003528 6.7e-06 55.1 52 53.8
SGA_v2.0_scaffold44G16909 Striga asiatica HOM05D003199 ORTHO05D003528 6.7e-06 55.1 74 43.2


User provided reference genes

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