Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B00112 Eucalyptus grandis HOM05D004927 ORTHO05D005798 3.6e-118 428.3 225 100.0
PGR083G0131 Punica granatum HOM05D004927 ORTHO05D005798 2.5e-34 149.8 110 70.0
TWI23G0043 Tripterygium wilfordii HOM05D004927 ORTHO05D005798 1.4e-29 134.0 111 61.3
Ciclev10022591m.g Citrus clementina HOM05D004927 ORTHO05D005798 2.4e-29 133.3 114 64.0
Prupe.5G152100 Prunus persica HOM05D004927 ORTHO05D005798 6.9e-29 131.7 112 66.1
Manes.14G051700 Manihot esculenta HOM05D004927 ORTHO05D005798 7.7e-28 128.3 114 63.2
MD06G1142800 Malus domestica HOM05D004927 ORTHO05D005798 5.0e-27 125.6 115 60.0
Atru.chr9.1061 Acer truncatum HOM05D004927 ORTHO05D005798 1.1e-26 124.4 122 58.2
Potri.012G096900 Populus trichocarpa HOM05D004927 ORTHO05D005798 3.2e-26 122.9 109 61.5
GSVIVG01008533001 Vitis vinifera HOM05D004927 ORTHO05D005798 4.2e-26 122.5 118 62.7
AT5G63460 Arabidopsis thaliana HOM05D004927 ORTHO05D005798 2.1e-25 120.2 111 61.3
Dinv11165 Davidia involucrata HOM05D004927 ORTHO05D005798 2.1e-25 120.2 116 59.5
CiPaw.11G008400 Carya illinoinensis HOM05D004927 ORTHO05D005798 2.7e-25 119.8 114 57.9
CiPaw.12G042500 Carya illinoinensis HOM05D004927 ORTHO05D005798 2.7e-25 119.8 114 58.8
Dinv04882 Davidia involucrata HOM05D004927 ORTHO05D005798 2.7e-25 119.8 116 59.5
Dinv23136 Davidia involucrata HOM05D004927 ORTHO05D005798 2.7e-25 119.8 116 59.5
Thecc.03G128000 Theobroma cacao HOM05D004927 ORTHO05D005798 2.7e-25 119.8 113 59.3
AL8G40520 Arabidopsis lyrata HOM05D004927 ORTHO05D005798 3.6e-25 119.4 111 62.2
Potri.015G094600 Populus trichocarpa HOM05D004927 ORTHO05D005798 3.6e-25 119.4 114 59.6
Phvul.003G210400 Phaseolus vulgaris HOM05D004927 ORTHO05D005798 4.6e-25 119.0 114 59.6
Duzib068G0304 Durio zibethinus HOM05D004927 ORTHO05D005798 7.9e-25 118.2 113 59.3
Manes.06G118800 Manihot esculenta HOM05D004927 ORTHO05D005798 7.9e-25 118.2 104 61.5
Actinidia25582 Actinidia chinensis HOM05D004927 ORTHO05D005798 1.4e-24 117.5 112 58.0
Glyma.05G047500 Glycine max HOM05D004927 ORTHO05D005798 1.8e-24 117.1 114 59.6
CSS0046411 Camellia sinensis var. sinensis HOM05D004927 ORTHO05D005798 3.0e-24 116.3 114 55.3
Duzib205G1407 Durio zibethinus HOM05D004927 ORTHO05D005798 3.9e-24 115.9 114 58.8
TWI39G0602 Tripterygium wilfordii HOM05D004927 ORTHO05D005798 3.9e-24 115.9 111 58.6
Actinidia08867 Actinidia chinensis HOM05D004927 ORTHO05D005798 6.7e-24 115.2 111 58.6
CARHR277310 Cardamine hirsuta HOM05D004927 ORTHO05D005798 6.7e-24 115.2 111 59.5
BcaC04g23330 Brassica carinata HOM05D004927 ORTHO05D005798 1.1e-23 114.4 111 61.3
Thhalv10005047m.g Eutrema salsugineum HOM05D004927 ORTHO05D005798 1.5e-23 114.0 111 60.4
Sp2g26540 Schrenkiella parvula HOM05D004927 ORTHO05D005798 3.3e-23 112.8 111 61.3
THA.LOC104818187 Tarenaya hassleriana HOM05D004927 ORTHO05D005798 4.3e-23 112.5 114 59.6
CANSAT80G0771 Cannabis sativa HOM05D004927 ORTHO05D005798 5.7e-23 112.1 112 57.1
Gohir.D11G039650 Gossypium hirsutum HOM05D004927 ORTHO05D005798 5.7e-23 112.1 113 58.4
Aa31LG1G18580 Aethionema arabicum HOM05D004927 ORTHO05D005798 7.4e-23 111.7 111 58.6
MSTRG.11279 Avicennia marina HOM05D004927 ORTHO05D005798 7.4e-23 111.7 115 56.5
Carub.0008s2416 Capsella rubella HOM05D004927 ORTHO05D005798 7.4e-23 111.7 111 59.5
Lj9A478G96 Lonicera japonica HOM05D004927 ORTHO05D005798 3.7e-22 109.4 148 47.3
vmacro16676 Vaccinium macrocarpon HOM05D004927 ORTHO05D005798 4.8e-22 109.0 118 53.4
THA.LOC104798947 Tarenaya hassleriana HOM05D004927 ORTHO05D005798 6.3e-22 108.6 111 57.7
QL10p003733 Quercus lobata HOM05D004927 ORTHO05D005798 1.1e-21 107.8 111 56.8
vmacro19200 Vaccinium macrocarpon HOM05D004927 ORTHO05D005798 1.4e-21 107.5 103 58.3
Gohir.A11G036100 Gossypium hirsutum HOM05D004927 ORTHO05D005798 1.8e-21 107.1 113 58.4
RcHm_v2.0_Chr7g0190331 Rosa chinensis HOM05D004927 ORTHO05D005798 3.1e-21 106.3 116 55.2
ECA247G2750 Erigeron canadensis HOM05D004927 ORTHO05D005798 5.3e-21 105.5 116 55.2
SGA_v2.0_scaffold161G37795 Striga asiatica HOM05D004927 ORTHO05D005798 5.3e-21 105.5 110 53.6
Actinidia33102 Actinidia chinensis HOM05D004927 ORTHO05D005798 9.1e-21 104.8 112 54.5
HanXRQChr09g0273101 Helianthus annuus HOM05D004927 ORTHO05D005798 1.2e-20 104.4 114 55.3
Gorai.007G042600 Gossypium raimondii HOM05D004927 ORTHO05D005798 2.0e-20 103.6 117 54.7
MD14G1158000 Malus domestica HOM05D004927 ORTHO05D005798 2.0e-20 103.6 115 53.0
Lalb_Chr12g0202181 Lupinus albus HOM05D004927 ORTHO05D005798 2.6e-20 103.2 111 54.1
Rhsim08G0189300 Rhododendron simsii HOM05D004927 ORTHO05D005798 2.6e-20 103.2 103 57.3
Lalb_Chr13g0297281 Lupinus albus HOM05D004927 ORTHO05D005798 7.7e-20 101.7 111 53.2
Cc04_g10030 Coffea canephora HOM05D004927 ORTHO05D005798 1.3e-19 100.9 106 53.8
Glyma.17G129300 Glycine max HOM05D004927 ORTHO05D005798 1.7e-19 100.5 108 55.6
A09p08260 Brassica napus HOM05D004927 ORTHO05D005798 2.2e-19 100.1 101 59.4
Sabra15G0116000 Salix brachista HOM05D004927 ORTHO05D005798 2.2e-19 100.1 130 49.2
SGA_v2.0_scaffold215G42324 Striga asiatica HOM05D004927 ORTHO05D005798 2.2e-19 100.1 101 53.5
FvH4_5g08180 Fragaria vesca HOM05D004927 ORTHO05D005798 2.9e-19 99.8 114 53.5
Oeu056013.1 Olea europaea HOM05D004927 ORTHO05D005798 2.9e-19 99.8 116 51.7
C09p09350 Brassica napus HOM05D000789 ORTHO05D005798 3.8e-19 99.4 101 59.4
BolC9t53847H Brassica oleracea HOM05D000789 ORTHO05D005798 3.8e-19 99.4 101 59.4
Sabra12G0070900 Salix brachista HOM05D004927 ORTHO05D005798 3.8e-19 99.4 114 53.5
Solyc03g111270.2 Solanum lycopersicum HOM05D004927 ORTHO05D005798 5.0e-19 99.0 111 52.3
Sopen03g030400 Solanum pennellii HOM05D004927 ORTHO05D005798 5.0e-19 99.0 111 52.3
BraA09t36477Z Brassica rapa HOM05D004927 ORTHO05D005798 6.5e-19 98.6 101 58.4
Lj4g0014142 Lotus japonicus HOM05D004927 ORTHO05D005798 8.5e-19 98.2 109 54.1
Lsat_1_v5_gn_1_29040 Lactuca sativa HOM05D004927 ORTHO05D005798 1.9e-18 97.1 112 55.4
BcaB04g19918 Brassica carinata HOM05D004927 ORTHO05D005798 5.5e-18 95.5 101 58.4
HPP92_001413 Vanilla planifolia HOM05D004927 ORTHO05D005798 5.5e-18 95.5 111 57.7
Nitab4.5_0003005g0020 Nicotiana tabacum HOM05D004927 ORTHO05D005798 9.4e-18 94.7 111 51.4
Sed0011812 Sechium edule HOM05D004927 ORTHO05D005798 9.4e-18 94.7 114 55.3
MELO3C026211.2 Cucumis melo HOM05D004927 ORTHO05D005798 1.2e-17 94.4 157 45.2
HanXRQChr07g0193231 Helianthus annuus HOM05D004927 ORTHO05D005798 1.6e-17 94.0 111 54.1
MBI07_g34620_MAGBIO Magnolia biondii HOM05D004927 ORTHO05D005798 2.1e-17 93.6 112 53.6
Psat0s2546g0040 Pisum sativum HOM05D004927 ORTHO05D005798 2.1e-17 93.6 113 49.6
Migut.D01264 Erythranthe guttata HOM05D004927 ORTHO05D005798 2.7e-17 93.2 154 42.9
Nn3g16487 Nelumbo nucifera HOM05D004927 ORTHO05D005798 2.7e-17 93.2 113 49.6
Aqoxy3G01521 Aquilegia oxysepala HOM05D004927 ORTHO05D005798 3.6e-17 92.8 115 50.4
MSTRG.4598 Avicennia marina HOM05D004927 ORTHO05D005798 3.6e-17 92.8 109 49.5
CsaV3_1G000620 Cucumis sativus L. HOM05D004927 ORTHO05D005798 4.7e-17 92.4 157 44.6
Medtr4g103580 Medicago truncatula HOM05D004927 ORTHO05D005798 6.1e-17 92.0 113 49.6
DCAR_026226 Daucus carota HOM05D004927 ORTHO05D005798 7.9e-17 91.7 101 51.5
Sc04g0000700 Simmondsia chinensis HOM05D004927 ORTHO05D005798 7.9e-17 91.7 109 53.2
PGSC0003DMG400015243 Solanum tuberosum HOM05D004927 ORTHO05D005798 7.9e-17 91.7 119 48.7
TPR.G19215 Trifolium pratense HOM05D004927 ORTHO05D005798 1.0e-16 91.3 113 49.6
COL.COLO4_28098 Corchorus olitorius HOM05D004927 ORTHO05D005798 2.3e-16 90.1 95 53.7
Gohir.A09G247250 Gossypium hirsutum HOM05D004927 ORTHO05D005798 3.9e-16 89.4 105 51.4
Gorai.006G271700 Gossypium raimondii HOM05D004927 ORTHO05D005798 3.9e-16 89.4 109 50.5
VMungo1215G0874 Vigna mungo HOM05D004927 ORTHO05D005798 6.7e-16 88.6 93 55.9
Lsat_1_v5_gn_4_80380 Lactuca sativa HOM05D004927 ORTHO05D005798 8.8e-16 88.2 108 52.8
Oeu018539.1 Olea europaea HOM05D004927 ORTHO05D005798 2.0e-15 87.0 114 51.8
FAN18G3853 Fragaria x ananassa HOM05D004927 ORTHO05D005798 2.6e-15 86.7 101 53.5
FAN13G0393 Fragaria x ananassa HOM05D004927 ORTHO05D005798 5.7e-15 85.5 101 52.5
FAN04G0012 Fragaria x ananassa HOM05D004927 ORTHO05D005798 7.4e-15 85.1 101 52.5
FAN08G3438 Fragaria x ananassa HOM05D004927 ORTHO05D005798 9.7e-15 84.7 101 52.5
CDE02G1054 Ceratophyllum demersum HOM05D004927 ORTHO05D005798 4.8e-14 82.4 106 50.0
Cfa018832 Carpinus fangiana HOM05D004927 ORTHO05D005798 6.3e-14 82.0 86 53.5
arahy.Tifrunner.gnm1.ann1.9DG48R Arachis hypogaea HOM05D004927 ORTHO05D005798 1.8e-13 80.5 95 53.7
arahy.Tifrunner.gnm1.ann1.PKYK26 Arachis hypogaea HOM05D004927 ORTHO05D005798 1.8e-13 80.5 95 53.7
SalBow1G5982 Salvia bowleyana HOM05D004927 ORTHO05D005798 7.0e-13 78.6 126 42.9
unitig_61.g26197 Utricularia gibba HOM05D004927 ORTHO05D005798 7.0e-13 78.6 163 36.8
BolC2t12346H Brassica oleracea HOM05D001512 ORTHO05D001574 2.6e-12 76.6 101 47.5
Hma1.2p1_2767F.1_g328170 Hydrangea macrophylla HOM05D004927 ORTHO05D005798 2.6e-12 76.6 85 54.1
Os12g0442900 Oryza sativa ssp. japonica HOM05D004927 ORTHO05D005798 7.7e-12 75.1 115 49.6
Gorai.004G275800 Gossypium raimondii HOM05D004927 ORTHO05D005798 1.0e-11 74.7 109 45.0
PSO063G5502 Papaver somniferum HOM05D004927 ORTHO05D005798 1.0e-11 74.7 124 43.5
C02p62750 Brassica napus HOM05D001512 ORTHO05D001574 1.3e-11 74.3 101 46.5
PSO478G0696 Papaver somniferum HOM05D004927 ORTHO05D005798 1.3e-11 74.3 112 42.0
BcaC03g18207 Brassica carinata HOM05D004927 ORTHO05D005798 2.2e-11 73.6 115 43.5
Zm00001eb169640 Zea mays HOM05D004927 ORTHO05D005798 2.2e-11 73.6 117 44.4
Os11g0483600 Oryza sativa ssp. japonica HOM05D004927 ORTHO05D005798 5.0e-11 72.4 122 45.1
AagrBONN_evm.TU.Sc2ySwM_344.432 Anthoceros agrestis HOM05D004927 ORTHO05D005798 8.5e-11 71.6 103 46.6
PSO017G7268 Papaver somniferum HOM05D004927 ORTHO05D005798 1.5e-10 70.9 112 41.1
Gohir.D09G247201 Gossypium hirsutum HOM05D004927 ORTHO05D005798 3.2e-10 69.7 61 60.7
TAR622G0157 Trochodendron aralioides HOM05D004927 ORTHO05D005798 3.2e-10 69.7 117 41.9
Haze_07225 Corylus avellana HOM05D004927 ORTHO05D005798 1.2e-09 67.8 66 56.1
Pp3c8_10310 Physcomitrium patens HOM05D004927 ORTHO05D005798 2.7e-09 66.6 112 41.1
SalBow1G7483 Salvia bowleyana HOM05D004927 ORTHO05D005798 6.1e-09 65.5 143 37.1
Cpa.g.sc13.128 Carica papaya HOM05D004927 ORTHO05D005798 1.4e-08 64.3 59 59.3
PSO782G2667 Papaver somniferum HOM05D004927 ORTHO05D005798 1.4e-08 64.3 115 40.9
Nitab4.5_0016919g0010 Nicotiana tabacum HOM05D004927 ORTHO05D005798 4.0e-08 62.8 89 41.6
CBR_g27958 Chara braunii HOM05D004927 ORTHO05D005798 8.8e-08 61.6 128 36.7
Gohir.D08G258600 Gossypium hirsutum HOM05D004927 ORTHO05D005798 1.1e-07 61.2 101 45.5
EL10As4g23391 Beta vulgaris HOM05D004927 ORTHO05D005798 1.5e-07 60.8 93 44.1
SEGI_01314 Sequoiadendron giganteum HOM05D004927 ORTHO05D005798 1.5e-07 60.8 45 64.4
ECA232G0032 Erigeron canadensis HOM05D004927 ORTHO05D005798 3.3e-07 59.7 104 41.3
BraA02t09201Z Brassica rapa HOM05D004927 ORTHO05D005798 5.7e-07 58.9 98 40.8
CBR_g36334 Chara braunii HOM05D004927 ORTHO05D005798 5.7e-07 58.9 138 35.5
CAN.G352.25 Capsicum annuum HOM05D004927 ORTHO05D005798 7.5e-07 58.5 83 44.6
A02p42760 Brassica napus HOM05D001512 ORTHO05D001574 2.8e-06 56.6 59 54.2


User provided reference genes

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