Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B00032 Eucalyptus grandis HOM05D004580 ORTHO05D005917 1.9e-231 805.4 398 100.0
PGR031G1028 Punica granatum HOM05D004580 ORTHO05D005917 4.2e-186 654.8 396 79.0
Manes.18G065933 Manihot esculenta HOM05D004580 ORTHO05D005917 3.5e-177 625.2 388 80.2
Cfa013658 Carpinus fangiana HOM05D004580 ORTHO05D005917 4.8e-174 614.8 398 75.9
CiPaw.07G178200 Carya illinoinensis HOM05D004580 ORTHO05D005917 8.1e-174 614.0 398 75.9
Duzib093G0091 Durio zibethinus HOM05D004580 ORTHO05D005917 3.4e-172 608.6 371 78.4
Haze_22292 Corylus avellana HOM05D004580 ORTHO05D005917 1.1e-170 603.6 396 75.0
Atru.chr13.1137 Acer truncatum HOM05D004580 ORTHO05D005917 1.2e-169 600.1 364 78.6
Ciclev10001487m.g Citrus clementina HOM05D004580 ORTHO05D005917 7.9e-169 597.4 399 72.9
TWI12G1022 Tripterygium wilfordii HOM05D004580 ORTHO05D005917 7.9e-169 597.4 366 78.4
Potri.005G162900 Populus trichocarpa HOM05D004580 ORTHO05D005917 1.0e-168 597.0 369 78.3
AT4G08960 Arabidopsis thaliana HOM05D004580 ORTHO05D005917 3.0e-168 595.5 368 77.2
Gorai.010G039500 Gossypium raimondii HOM05D004580 ORTHO05D005917 3.9e-168 595.1 371 76.3
COL.COLO4_12032 Corchorus olitorius HOM05D004580 ORTHO05D005917 8.7e-168 594.0 369 77.2
Gohir.A06G034900 Gossypium hirsutum HOM05D004580 ORTHO05D005917 1.5e-167 593.2 371 76.0
Gohir.D06G035500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 5.6e-167 591.3 371 76.0
Prupe.1G521000 Prunus persica HOM05D004580 ORTHO05D005917 7.4e-167 590.9 398 73.4
CsaV3_2G029780 Cucumis sativus L. HOM05D004580 ORTHO05D005917 1.6e-166 589.7 402 73.1
arahy.Tifrunner.gnm1.ann1.UE4JHM Arachis hypogaea HOM05D004580 ORTHO05D005917 2.1e-166 589.3 350 78.9
Sabra05G0123100 Salix brachista HOM05D004580 ORTHO05D005917 2.8e-166 589.0 367 77.7
THA.LOC104813113 Tarenaya hassleriana HOM05D004580 ORTHO05D005917 2.8e-166 589.0 398 73.4
AL6G41550 Arabidopsis lyrata HOM05D004580 ORTHO05D005917 4.8e-166 588.2 398 72.6
CARHR259970 Cardamine hirsuta HOM05D004580 ORTHO05D005917 4.8e-166 588.2 399 72.7
Nn5g30036 Nelumbo nucifera HOM05D004580 ORTHO05D005917 6.2e-166 587.8 366 76.0
Sp6g08660 Schrenkiella parvula HOM05D004580 ORTHO05D005917 1.1e-165 587.0 361 77.3
Aa31LG9G14650 Aethionema arabicum HOM05D004580 ORTHO05D005917 1.4e-165 586.6 396 73.2
arahy.Tifrunner.gnm1.ann1.T3Z839 Arachis hypogaea HOM05D004580 ORTHO05D005917 3.1e-165 585.5 347 79.3
Lsat_1_v5_gn_4_64561 Lactuca sativa HOM05D004580 ORTHO05D005917 3.1e-165 585.5 367 75.7
BcaB01g02381 Brassica carinata HOM05D004580 ORTHO05D005917 6.9e-165 584.3 369 76.2
Carub.0006s2756 Capsella rubella HOM05D004580 ORTHO05D005917 2.6e-164 582.4 390 73.3
Dinv17643 Davidia involucrata HOM05D004580 ORTHO05D005917 2.6e-164 582.4 349 78.5
Duzib041G0230 Durio zibethinus HOM05D004580 ORTHO05D005917 7.6e-164 580.9 369 75.1
MD15G1419400 Malus domestica HOM05D004580 ORTHO05D005917 7.6e-164 580.9 364 75.8
Sed0021368 Sechium edule HOM05D004580 ORTHO05D005917 1.7e-163 579.7 398 72.4
RcHm_v2.0_Chr1g0321971 Rosa chinensis HOM05D004580 ORTHO05D005917 2.9e-163 578.9 364 77.7
TAR625G1360 Trochodendron aralioides HOM05D004580 ORTHO05D005917 2.9e-163 578.9 350 78.0
MELO3C011036.2 Cucumis melo HOM05D004580 ORTHO05D005917 3.8e-163 578.6 397 72.5
Thhalv10028722m.g Eutrema salsugineum HOM05D004580 ORTHO05D005917 8.4e-163 577.4 368 75.5
BcaB01g02835 Brassica carinata HOM05D004580 ORTHO05D005917 1.1e-162 577.0 398 71.4
BcaC01g04745 Brassica carinata HOM05D004580 ORTHO05D005917 1.1e-162 577.0 398 71.4
ClCG08G011200 Citrullus lanatus HOM05D004580 ORTHO05D005917 1.1e-162 577.0 363 76.9
MD08G1227100 Malus domestica HOM05D004580 ORTHO05D005917 1.9e-162 576.2 350 77.7
ECA236G1081 Erigeron canadensis HOM05D004580 ORTHO05D005917 2.5e-162 575.9 374 74.9
C09p37760 Brassica napus HOM05D004580 ORTHO05D005917 3.2e-162 575.5 366 74.6
BolC9t56609H Brassica oleracea HOM05D004580 ORTHO05D005917 3.2e-162 575.5 366 74.6
QL12p037342 Quercus lobata HOM05D004580 ORTHO05D005917 3.2e-162 575.5 362 75.7
BcaB01g02823 Brassica carinata HOM05D004580 ORTHO05D005917 5.5e-162 574.7 398 71.1
Thecc.08G104300 Theobroma cacao HOM05D004580 ORTHO05D005917 7.1e-162 574.3 389 72.0
Hma1.2p1_0044F.1_g026170 Hydrangea macrophylla HOM05D004580 ORTHO05D005917 1.6e-161 573.2 363 74.7
Aqoxy7G04111 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 2.1e-161 572.8 349 80.5
VMungo1127G0933 Vigna mungo HOM05D004580 ORTHO05D005917 2.1e-161 572.8 365 75.1
Potri.002G099000 Populus trichocarpa HOM05D004580 ORTHO05D005917 2.7e-161 572.4 397 71.8
A03p28330 Brassica napus HOM05D004580 ORTHO05D005917 7.9e-161 570.9 396 71.2
C03p34240 Brassica napus HOM05D004580 ORTHO05D005917 7.9e-161 570.9 396 71.2
BolC3t15733H Brassica oleracea HOM05D004580 ORTHO05D005917 7.9e-161 570.9 396 71.2
Actinidia04333 Actinidia chinensis HOM05D004580 ORTHO05D005917 1.3e-160 570.1 377 73.7
BraA03t12037Z Brassica rapa HOM05D004580 ORTHO05D005917 1.8e-160 569.7 396 71.5
Phvul.011G102600 Phaseolus vulgaris HOM05D004580 ORTHO05D005917 6.7e-160 567.8 367 74.4
vmacro15988 Vaccinium macrocarpon HOM05D004580 ORTHO05D005917 1.1e-159 567.0 363 73.3
CANSAT25G2089 Cannabis sativa HOM05D004580 ORTHO05D005917 3.3e-159 565.5 395 72.4
RcHm_v2.0_Chr7g0243401 Rosa chinensis HOM05D004580 ORTHO05D005917 5.7e-159 564.7 362 76.0
PSO541G6503 Papaver somniferum HOM05D004580 ORTHO05D005917 1.3e-158 563.5 366 73.2
Cpa.g.sc36.160 Carica papaya HOM05D004580 ORTHO05D005917 1.6e-158 563.1 395 71.1
Nn5g30292 Nelumbo nucifera HOM05D004580 ORTHO05D005917 3.7e-158 562.0 342 77.2
FvH4_6g23990 Fragaria vesca HOM05D004580 ORTHO05D005917 4.8e-158 561.6 368 73.9
FAN14G1039 Fragaria x ananassa HOM05D004580 ORTHO05D005917 4.8e-158 561.6 368 73.9
TAR381G0740 Trochodendron aralioides HOM05D004580 ORTHO05D005917 6.3e-158 561.2 350 76.6
CsaV3_3G047600 Cucumis sativus L. HOM05D004580 ORTHO05D005917 3.1e-157 558.9 355 74.6
MELO3C003564.2 Cucumis melo HOM05D004580 ORTHO05D005917 4.1e-157 558.5 353 75.1
FAN05G1019 Fragaria x ananassa HOM05D004580 ORTHO05D005917 1.2e-156 557.0 356 75.3
Medtr4g053370 Medicago truncatula HOM05D004580 ORTHO05D005917 2.6e-156 555.8 350 76.3
ClCG11G014220 Citrullus lanatus HOM05D004580 ORTHO05D005917 4.5e-156 555.1 355 74.6
HanXRQChr04g0124871 Helianthus annuus HOM05D004580 ORTHO05D005917 5.9e-156 554.7 391 69.1
Glyma.11G184601 Glycine max HOM05D004580 ORTHO05D005917 1.1e-154 550.4 350 75.7
Sc10g0006870 Simmondsia chinensis HOM05D004580 ORTHO05D005917 2.5e-154 549.3 379 70.2
BcaC04g20934 Brassica carinata HOM05D004580 ORTHO05D005917 1.2e-153 547.0 366 72.4
PSO781G0322 Papaver somniferum HOM05D004580 ORTHO05D005917 1.2e-153 547.0 359 70.2
CSS0036827 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 6.1e-153 544.7 361 72.9
DCAR_023183 Daucus carota HOM05D004580 ORTHO05D005917 1.0e-152 543.9 370 70.5
Sabra02G0077800 Salix brachista HOM05D004580 ORTHO05D005917 1.8e-152 543.1 396 69.2
CSS0039091 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 2.3e-152 542.7 360 72.8
DCAR_002598 Daucus carota HOM05D004580 ORTHO05D005917 5.1e-152 541.6 368 69.6
Nitab4.5_0000069g0120 Nicotiana tabacum HOM05D004580 ORTHO05D005917 5.1e-152 541.6 364 71.7
Nitab4.5_0013217g0010 Nicotiana tabacum HOM05D004580 ORTHO05D005917 1.5e-151 540.0 364 71.7
Oeu036766.1 Olea europaea HOM05D004580 ORTHO05D005917 2.5e-151 539.3 363 70.5
MSTRG.2066 Avicennia marina HOM05D004580 ORTHO05D005917 4.3e-151 538.5 364 70.9
Ca_19393_v3 Cicer arietinum L. HOM05D004580 ORTHO05D005917 1.7e-150 536.6 389 68.1
Sed0008659 Sechium edule HOM05D004580 ORTHO05D005917 1.7e-150 536.6 319 77.1
Hund08631 Selenicereus undatus HOM05D004580 ORTHO05D005917 3.7e-150 535.4 396 65.4
PGSC0003DMG402016396 Solanum tuberosum HOM05D004580 ORTHO05D005917 3.7e-150 535.4 367 69.5
CDE05G3003 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 6.3e-150 534.6 348 72.1
Solyc01g008280.4 Solanum lycopersicum HOM05D004580 ORTHO05D005917 8.2e-150 534.3 365 70.1
Sopen01g003800 Solanum pennellii HOM05D004580 ORTHO05D005917 8.2e-150 534.3 365 70.4
Nn1g05417 Nelumbo nucifera HOM05D004580 ORTHO05D005917 1.1e-149 533.9 343 74.3
MSTRG.13678 Avicennia marina HOM05D004580 ORTHO05D005917 4.1e-149 531.9 364 70.1
Lalb_Chr03g0028011 Lupinus albus HOM05D004580 ORTHO05D005917 4.1e-149 531.9 368 71.2
GSVIVG01009068001 Vitis vinifera HOM05D004580 ORTHO05D005917 4.1e-149 531.9 349 72.8
CSS0011251 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 9.1e-149 530.8 309 79.6
Rhsim09G0069400 Rhododendron simsii HOM05D004580 ORTHO05D005917 1.2e-148 530.4 367 70.8
PSO541G6453 Papaver somniferum HOM05D004580 ORTHO05D005917 4.5e-148 528.5 363 68.0
Lj3g0026440 Lotus japonicus HOM05D004580 ORTHO05D005917 7.7e-148 527.7 350 73.1
MBI05_g34722_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 2.5e-146 522.7 366 69.4
Psat7g188520 Pisum sativum HOM05D004580 ORTHO05D005917 2.5e-146 522.7 402 65.7
SGA_v2.0_scaffold358G49840 Striga asiatica HOM05D004580 ORTHO05D005917 1.2e-145 520.4 364 68.7
Migut.E00684 Erythranthe guttata HOM05D004580 ORTHO05D005917 1.4e-144 516.9 361 68.4
Ah.01g012710 Amaranthus hybridus HOM05D004580 ORTHO05D005917 3.0e-144 515.8 366 67.5
ATR0706G027 Amborella trichopoda HOM05D004580 ORTHO05D005917 3.9e-144 515.4 337 73.0
Lj3P847T35 Lonicera japonica HOM05D004580 ORTHO05D005917 3.1e-141 505.8 306 76.5
SEGI_24357 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 7.0e-141 504.6 344 68.6
AUR62017729 Chenopodium quinoa HOM05D004580 ORTHO05D005917 1.0e-139 500.7 366 65.3
HPP92_004278 Vanilla planifolia HOM05D004580 ORTHO05D005917 8.5e-139 497.7 396 64.1
FvH4_5g29380 Fragaria vesca HOM05D004580 ORTHO05D005917 2.5e-138 496.1 359 69.6
EL10Ac9g22979 Beta vulgaris HOM05D004580 ORTHO05D005917 3.6e-137 492.3 345 67.8
SHI33348 Sapria himalayana HOM05D004580 ORTHO05D005917 5.3e-133 478.4 367 64.9
MBI02_g02175_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 5.9e-132 474.9 350 66.3
AagrBONN_evm.TU.Sc2ySwM_117.2526 Anthoceros agrestis HOM05D004580 ORTHO05D005917 1.2e-127 460.7 373 60.3
Gorai.009G235200 Gossypium raimondii HOM05D004580 ORTHO05D005917 2.0e-127 459.9 317 68.5
Zm00001eb372770 Zea mays HOM05D004580 ORTHO05D005917 2.0e-127 459.9 391 60.4
Peaxi162Scf00021g02317 Petunia axillaris HOM05D004580 ORTHO05D005917 1.3e-126 457.2 364 62.1
Os06g0219800 Oryza sativa ssp. japonica HOM05D004580 ORTHO05D005917 1.7e-126 456.8 392 59.9
Mapoly0004s0171 Marchantia polymorpha HOM05D004580 ORTHO05D005917 4.1e-125 452.2 372 59.7
Pp3c1_41950 Physcomitrium patens HOM05D004580 ORTHO05D005917 8.5e-123 444.5 349 59.9
Pp3c2_670 Physcomitrium patens HOM05D004580 ORTHO05D005917 1.1e-122 444.1 302 66.2
Gohir.D05G227500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 2.0e-119 433.3 231 84.4
FAN18G2046 Fragaria x ananassa HOM05D004580 ORTHO05D005917 3.4e-119 432.6 287 73.5
HPP92_016361 Vanilla planifolia HOM05D004580 ORTHO05D005917 1.5e-114 417.2 378 58.5
Lalb_Chr19g0136591 Lupinus albus HOM05D004580 ORTHO05D005917 9.5e-114 414.5 365 58.9
SMO329G0013 Selaginella moellendorffii HOM05D004580 ORTHO05D005917 1.6e-113 413.7 328 58.2
Gohir.A05G224950 Gossypium hirsutum HOM05D004580 ORTHO05D005917 8.0e-113 411.4 304 65.8
TPR.G17228 Trifolium pratense HOM05D004580 ORTHO05D005917 1.3e-110 404.1 316 63.3
CBR_g45439 Chara braunii HOM05D004580 ORTHO05D005917 4.5e-108 395.6 393 52.9
Glyma.12G087751 Glycine max HOM05D004580 ORTHO05D005917 4.9e-102 375.6 203 86.7
FAN02G1810 Fragaria x ananassa HOM05D004580 ORTHO05D005917 1.2e-100 370.9 198 86.9
unitig_8.g3592 Utricularia gibba HOM05D004580 ORTHO05D005917 2.9e-94 349.7 198 80.3
Aqoxy6G00748 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 3.7e-94 349.4 241 74.7
BraA09t38542Z Brassica rapa HOM05D004580 ORTHO05D005917 2.5e-90 336.7 219 73.1
A09p29790 Brassica napus HOM05D004580 ORTHO05D005917 2.0e-87 327.0 177 85.3
CAN.G282.45 Capsicum annuum HOM05D004580 ORTHO05D005917 2.7e-84 316.6 231 67.1
SEGI_19435 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 2.7e-84 316.6 289 55.7
FAN24G1342 Fragaria x ananassa HOM05D004580 ORTHO05D005917 1.1e-77 294.7 229 65.5
Cre13.g580650 Chlamydomonas reinhardtii HOM05D004580 ORTHO05D005917 2.4e-77 293.5 394 39.8
PRCOL_00005481 Prasinoderma coloniale HOM05D004580 ORTHO05D005917 2.1e-73 280.4 344 43.0
CDE05G0498 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 2.4e-72 276.9 212 61.8
MCO01G633 Micromonas commoda HOM05D004580 ORTHO05D005917 6.9e-72 275.4 304 43.4
FvH4_2g11953 Fragaria vesca HOM05D004580 ORTHO05D000007 2.2e-70 270.4 221 62.9
Cfa021829 Carpinus fangiana HOM05D004580 ORTHO05D011646 1.6e-60 237.7 314 38.9
Oeu013193.1 Olea europaea HOM05D004580 ORTHO05D005917 2.1e-60 237.3 198 60.1
Cfa001645 Carpinus fangiana HOM05D004580 ORTHO05D020348 2.2e-54 217.2 336 39.6
GSVIVG01009057001 Vitis vinifera HOM05D004580 ORTHO05D005917 1.5e-47 194.5 125 75.2
FAN24G1075 Fragaria x ananassa HOM05D004580 ORTHO05D005917 3.6e-36 156.8 148 56.8
Cfa014845 Carpinus fangiana HOM05D000016 ORTHO05D000725 2.2e-33 147.5 108 63.9
Nn5g29558 Nelumbo nucifera HOM05D004580 ORTHO05D005917 5.9e-31 139.4 119 59.7
Nn3g16512 Nelumbo nucifera HOM05D004580 ORTHO05D005917 4.8e-25 119.8 65 81.5
FvH4_4g06652 Fragaria vesca HOM05D004580 ORTHO05D000031 1.6e-20 104.8 57 80.7
Nitab4.5_0006124g0020 Nicotiana tabacum HOM05D000011 ORTHO05D036898 1.7e-06 58.2 43 65.1


User provided reference genes

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