Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A02995 Eucalyptus grandis HOM05D006461 ORTHO05D008199 2.2e-123 445.7 229 100.0
Haze_00341 Corylus avellana HOM05D006461 ORTHO05D000508 4.7e-17 92.4 56 82.1
Nn3g19117 Nelumbo nucifera HOM05D006461 ORTHO05D008199 1.4e-16 90.9 51 88.2
arahy.Tifrunner.gnm1.ann1.8SK5FU Arachis hypogaea HOM05D006461 ORTHO05D008199 2.4e-16 90.1 49 89.8
arahy.Tifrunner.gnm1.ann1.W7YZT9 Arachis hypogaea HOM05D006461 ORTHO05D008199 2.4e-16 90.1 49 89.8
CiPaw.05G210400 Carya illinoinensis HOM05D006461 ORTHO05D008199 2.4e-16 90.1 49 91.8
MELO3C005387.2 Cucumis melo HOM05D006461 ORTHO05D008199 2.4e-16 90.1 49 89.8
CsaV3_5G005660 Cucumis sativus L. HOM05D006461 ORTHO05D008199 2.4e-16 90.1 49 89.8
Cfa016120 Carpinus fangiana HOM05D006461 ORTHO05D008199 3.1e-16 89.7 49 89.8
DCAR_020437 Daucus carota HOM05D006461 ORTHO05D008199 3.1e-16 89.7 49 89.8
ClCG01G005420 Citrullus lanatus HOM05D006461 ORTHO05D008199 5.2e-16 89.0 49 87.8
Duzib106G1824 Durio zibethinus HOM05D006461 ORTHO05D008199 6.8e-16 88.6 48 89.6
Manes.08G158500 Manihot esculenta HOM05D006461 ORTHO05D008199 6.8e-16 88.6 49 85.7
Atru.chr2.1733 Acer truncatum HOM05D006461 ORTHO05D008199 8.9e-16 88.2 47 89.4
Sed0021956 Sechium edule HOM05D006461 ORTHO05D008199 8.9e-16 88.2 48 89.6
PGSC0003DMG400026478 Solanum tuberosum HOM05D006461 ORTHO05D008199 8.9e-16 88.2 49 85.7
QL09p005902 Quercus lobata HOM05D006461 ORTHO05D008199 1.2e-15 87.8 50 82.0
RcHm_v2.0_Chr4g0406641 Rosa chinensis HOM05D006461 ORTHO05D008199 1.2e-15 87.8 49 87.8
GSVIVG01024255001 Vitis vinifera HOM05D006461 ORTHO05D008199 1.2e-15 87.8 49 85.7
Aqoxy3G01574 Aquilegia oxysepala HOM05D006461 ORTHO05D008199 1.5e-15 87.4 49 85.7
Ciclev10032825m.g Citrus clementina HOM05D006461 ORTHO05D008199 1.5e-15 87.4 47 89.4
PGR119G0757 Punica granatum HOM05D006461 ORTHO05D008199 1.5e-15 87.4 49 87.8
HPP92_003741 Vanilla planifolia HOM05D001207 ORTHO05D007056 1.5e-15 87.4 47 89.4
CSS0025765 Camellia sinensis var. sinensis HOM05D006461 ORTHO05D008199 2.0e-15 87.0 74 59.5
Cc02_g00020 Coffea canephora HOM05D006461 ORTHO05D008199 2.0e-15 87.0 50 82.0
ECA232G1267 Erigeron canadensis HOM05D006461 ORTHO05D008199 2.0e-15 87.0 67 65.7
FAN12G0004 Fragaria x ananassa HOM05D006461 ORTHO05D008199 2.0e-15 87.0 48 87.5
FAN17G2347 Fragaria x ananassa HOM05D006461 ORTHO05D008199 2.0e-15 87.0 48 87.5
Lsat_1_v5_gn_9_48000 Lactuca sativa HOM05D006461 ORTHO05D008199 2.0e-15 87.0 67 65.7
Lj7P538T25 Lonicera japonica HOM05D006461 ORTHO05D008199 2.0e-15 87.0 48 85.4
Medtr1g040145 Medicago truncatula HOM05D006461 ORTHO05D008199 2.0e-15 87.0 49 85.7
Peaxi162Scf00516g00428 Petunia axillaris HOM05D006461 ORTHO05D008199 2.0e-15 87.0 48 87.5
Solyc03g097360.3 Solanum lycopersicum HOM05D006461 ORTHO05D008199 2.0e-15 87.0 49 83.7
Sopen03g028120 Solanum pennellii HOM05D006461 ORTHO05D008199 2.0e-15 87.0 49 83.7
Actinidia08786 Actinidia chinensis HOM05D006461 ORTHO05D008199 2.6e-15 86.7 49 85.7
Actinidia24631 Actinidia chinensis HOM05D006461 ORTHO05D008199 2.6e-15 86.7 49 85.7
CANSAT54G2891 Cannabis sativa HOM05D006461 ORTHO05D008199 2.6e-15 86.7 50 84.0
Dinv19309 Davidia involucrata HOM05D006461 ORTHO05D008199 2.6e-15 86.7 47 87.2
Rhsim03G0225700 Rhododendron simsii HOM05D006461 ORTHO05D008199 2.6e-15 86.7 46 91.3
Thecc.05G228900 Theobroma cacao HOM05D006461 ORTHO05D008199 2.6e-15 86.7 48 87.5
TAR375G0815 Trochodendron aralioides HOM05D006461 ORTHO05D008199 2.6e-15 86.7 50 82.0
Ah.08g222190 Amaranthus hybridus HOM05D006461 ORTHO05D008199 3.4e-15 86.3 49 85.7
Lj6g0024347 Lotus japonicus HOM05D006461 ORTHO05D008199 3.4e-15 86.3 48 87.5
Potri.013G074100 Populus trichocarpa HOM05D006461 ORTHO05D008199 3.4e-15 86.3 48 85.4
SEGI_06006 Sequoiadendron giganteum HOM05D006461 ORTHO05D008199 3.4e-15 86.3 48 85.4
FvH4_4g10840 Fragaria vesca HOM05D006461 ORTHO05D008199 4.4e-15 85.9 49 83.7
Glyma.02G000900 Glycine max HOM05D006461 ORTHO05D008199 4.4e-15 85.9 49 85.7
Gohir.D13G163800 Gossypium hirsutum HOM05D006461 ORTHO05D008199 4.4e-15 85.9 48 83.3
Lalb_Chr19g0127781 Lupinus albus HOM05D006461 ORTHO05D008199 4.4e-15 85.9 48 87.5
Nitab4.5_0000021g0870 Nicotiana tabacum HOM05D006461 ORTHO05D008199 4.4e-15 85.9 47 87.2
Nitab4.5_0005545g0020 Nicotiana tabacum HOM05D006461 ORTHO05D008199 4.4e-15 85.9 47 87.2
PSO063G2738 Papaver somniferum HOM05D006461 ORTHO05D008199 4.4e-15 85.9 49 81.6
Psat6g101920 Pisum sativum HOM05D006461 ORTHO05D008199 4.4e-15 85.9 48 85.4
Hund20961 Selenicereus undatus HOM05D006461 ORTHO05D008199 4.4e-15 85.9 50 82.0
TWI32G0808 Tripterygium wilfordii HOM05D006461 ORTHO05D008199 4.4e-15 85.9 48 85.4
VMungo0720G0947 Vigna mungo HOM05D006461 ORTHO05D008199 4.4e-15 85.9 49 85.7
AagrBONN_evm.TU.Sc2ySwM_117.1385 Anthoceros agrestis HOM05D006461 ORTHO05D008199 5.8e-15 85.5 68 66.2
AUR62001576 Chenopodium quinoa HOM05D006461 ORTHO05D008199 5.8e-15 85.5 50 82.0
AUR62020207 Chenopodium quinoa HOM05D006461 ORTHO05D008199 5.8e-15 85.5 50 82.0
Ca_26296_v3 Cicer arietinum L. HOM05D006461 ORTHO05D008199 5.8e-15 85.5 49 83.7
HanXRQChr05g0140271 Helianthus annuus HOM05D006461 ORTHO05D008199 5.8e-15 85.5 49 85.7
Os06g0484600 Oryza sativa ssp. japonica HOM05D006461 ORTHO05D008199 5.8e-15 85.5 103 51.5
Prupe.1G398900 Prunus persica HOM05D006461 ORTHO05D008199 5.8e-15 85.5 48 83.3
CiPaw.06G037900 Carya illinoinensis HOM05D006461 ORTHO05D008199 7.6e-15 85.1 50 86.0
Gorai.013G199400 Gossypium raimondii HOM05D006461 ORTHO05D008199 7.6e-15 85.1 48 83.3
CSS0040075 Camellia sinensis var. sinensis HOM05D006461 ORTHO05D008199 9.9e-15 84.7 51 80.4
Cc11_g04930 Coffea canephora HOM05D006461 ORTHO05D008199 9.9e-15 84.7 50 78.0
EL10Ac7g16271 Beta vulgaris HOM05D006461 ORTHO05D008199 1.3e-14 84.3 50 82.0
Hma1.2p1_0074F.1_g039100 Hydrangea macrophylla HOM05D006461 ORTHO05D008199 1.3e-14 84.3 49 81.6
Sc03g0004610 Simmondsia chinensis HOM05D006461 ORTHO05D008199 1.3e-14 84.3 50 82.0
THA.LOC104802902 Tarenaya hassleriana HOM05D006461 ORTHO05D008199 1.3e-14 84.3 62 67.7
TPR.G30220 Trifolium pratense HOM05D006461 ORTHO05D008199 1.3e-14 84.3 48 85.4
Gohir.A13G158700 Gossypium hirsutum HOM05D006461 ORTHO05D008199 1.7e-14 84.0 48 83.3
Manes.09G131300 Manihot esculenta HOM05D006461 ORTHO05D008199 1.7e-14 84.0 48 83.3
Pp3c1_12810 Physcomitrium patens HOM05D006461 ORTHO05D008199 1.7e-14 84.0 72 62.5
unitig_62.g23822 Utricularia gibba HOM05D006461 ORTHO05D008199 1.7e-14 84.0 49 81.6
MD08G1049500 Malus domestica HOM05D006461 ORTHO05D008199 2.2e-14 83.6 47 85.1
CAN.G732.29 Capsicum annuum HOM05D006461 ORTHO05D008199 2.9e-14 83.2 49 79.6
Zm00001eb278180 Zea mays HOM05D006461 ORTHO05D008199 2.9e-14 83.2 49 79.6
Migut.F00927 Erythranthe guttata HOM05D006461 ORTHO05D008199 3.8e-14 82.8 49 79.6
SalBow2G0694 Salvia bowleyana HOM05D006461 ORTHO05D008199 3.8e-14 82.8 49 79.6
SGA_v2.0_scaffold51G18860 Striga asiatica HOM05D006461 ORTHO05D008199 3.8e-14 82.8 46 87.0
Phvul.007G281100 Phaseolus vulgaris HOM05D006461 ORTHO05D008199 6.4e-14 82.0 49 79.6
MSTRG.8560 Avicennia marina HOM05D006461 ORTHO05D008199 8.4e-14 81.6 46 84.8
BcaC04g18779 Brassica carinata HOM05D006461 ORTHO05D008199 1.4e-13 80.9 100 48.0
CDE12G0687 Ceratophyllum demersum HOM05D006461 ORTHO05D008199 1.9e-13 80.5 47 83.0
BcaB01g04940 Brassica carinata HOM05D006461 ORTHO05D008199 2.4e-13 80.1 59 66.1
BcaB01g05208 Brassica carinata HOM05D006461 ORTHO05D008199 2.4e-13 80.1 59 66.1
A03p08420 Brassica napus HOM05D006461 ORTHO05D008199 2.4e-13 80.1 59 66.1
A10p21840 Brassica napus HOM05D006461 ORTHO05D008199 2.4e-13 80.1 59 66.1
C03p09820 Brassica napus HOM05D006461 ORTHO05D008199 2.4e-13 80.1 59 66.1
C09p59590 Brassica napus HOM05D006461 ORTHO05D008199 2.4e-13 80.1 59 66.1
BolC3t13470H Brassica oleracea HOM05D006461 ORTHO05D008199 2.4e-13 80.1 59 66.1
BraA03t10165Z Brassica rapa HOM05D006461 ORTHO05D008199 2.4e-13 80.1 59 66.1
BraA10t44244Z Brassica rapa HOM05D006461 ORTHO05D008199 2.4e-13 80.1 59 66.1
CARHR195620 Cardamine hirsuta HOM05D006461 ORTHO05D008199 2.4e-13 80.1 59 66.1
MD15G1045100 Malus domestica HOM05D006461 ORTHO05D008199 2.4e-13 80.1 161 39.1
Mapoly0098s0024 Marchantia polymorpha HOM05D006461 ORTHO05D008199 2.4e-13 80.1 49 81.6
Sp6g26660 Schrenkiella parvula HOM05D006461 ORTHO05D008199 2.4e-13 80.1 59 66.1
AL6G28650 Arabidopsis lyrata HOM05D006461 ORTHO05D008199 4.2e-13 79.3 45 82.2
BolC9t58798H Brassica oleracea HOM05D006461 ORTHO05D008199 4.2e-13 79.3 45 82.2
Carub.0006s1580 Capsella rubella HOM05D006461 ORTHO05D008199 4.2e-13 79.3 45 82.2
Thhalv10014786m.g Eutrema salsugineum HOM05D006461 ORTHO05D008199 4.2e-13 79.3 45 82.2
SMO358G0572 Selaginella moellendorffii HOM05D006461 ORTHO05D008199 4.2e-13 79.3 49 79.6
Hund18806 Selenicereus undatus HOM05D006461 ORTHO05D008199 5.4e-13 79.0 50 76.0
Aa31LG11G12100 Aethionema arabicum HOM05D006461 ORTHO05D008199 9.3e-13 78.2 59 64.4
BcaB08g36762 Brassica carinata HOM05D006461 ORTHO05D008199 2.1e-12 77.0 59 64.4
Cre09.g394701 Chlamydomonas reinhardtii HOM05D006461 ORTHO05D008199 3.9e-11 72.8 65 60.0
Sed0001670 Sechium edule HOM05D006461 ORTHO05D008199 5.1e-11 72.4 39 89.7
PRCOL_00004611 Prasinoderma coloniale HOM05D006461 ORTHO05D008199 1.5e-10 70.9 47 68.1
TWI60G1716 Tripterygium wilfordii HOM05D006461 ORTHO05D008199 3.3e-10 69.7 49 69.4
MCO16G354 Micromonas commoda HOM05D006461 ORTHO05D008199 6.2e-09 65.5 63 54.0
Sabra13G0064300 Salix brachista HOM05D006461 ORTHO05D008199 6.2e-09 65.5 42 73.8
SMO358G0215 Selaginella moellendorffii HOM05D006461 ORTHO05D008199 3.8e-06 56.2 48 50.0


User provided reference genes

Program Settings