Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A02801 Eucalyptus grandis HOM05D006363 ORTHO05D007920 2.9e-109 398.7 213 100.0
Duzib205G1779 Durio zibethinus HOM05D006363 ORTHO05D007920 1.6e-75 286.6 204 73.0
Gorai.008G278600 Gossypium raimondii HOM05D006363 ORTHO05D007920 1.6e-75 286.6 206 73.3
Gohir.D12G260100 Gossypium hirsutum HOM05D006363 ORTHO05D007920 3.5e-75 285.4 206 72.8
FvH4_7g29240 Fragaria vesca HOM05D006363 ORTHO05D007920 4.6e-75 285.0 212 71.7
FAN06G3284 Fragaria x ananassa HOM05D006363 ORTHO05D007920 4.6e-75 285.0 212 71.7
FAN06G3928 Fragaria x ananassa HOM05D006363 ORTHO05D007920 4.6e-75 285.0 212 71.7
Gohir.A12G258900 Gossypium hirsutum HOM05D006363 ORTHO05D007920 6.1e-75 284.6 204 73.5
Thecc.03G174500 Theobroma cacao HOM05D006363 ORTHO05D007920 6.1e-75 284.6 205 73.2
RcHm_v2.0_Chr1g0376991 Rosa chinensis HOM05D006363 ORTHO05D007920 1.0e-74 283.9 212 71.7
COL.COLO4_14288 Corchorus olitorius HOM05D006363 ORTHO05D007920 1.8e-74 283.1 202 72.8
FAN10G0438 Fragaria x ananassa HOM05D006363 ORTHO05D007920 2.3e-74 282.7 212 70.8
Cfa008303 Carpinus fangiana HOM05D006363 ORTHO05D007920 4.3e-73 278.5 206 69.9
Haze_13734 Corylus avellana HOM05D006363 ORTHO05D007920 5.7e-73 278.1 207 70.0
MD07G1266800 Malus domestica HOM05D006363 ORTHO05D007920 7.4e-73 277.7 200 73.0
TPR.G14326 Trifolium pratense HOM05D006363 ORTHO05D007920 7.4e-73 277.7 212 69.8
Psat6g200600 Pisum sativum HOM05D006363 ORTHO05D007920 2.2e-72 276.2 214 68.7
FAN03G1027 Fragaria x ananassa HOM05D006363 ORTHO05D007920 2.8e-72 275.8 212 69.8
CiPaw.03G104700 Carya illinoinensis HOM05D006363 ORTHO05D007920 6.3e-72 274.6 202 70.3
MD01G1199000 Malus domestica HOM05D006363 ORTHO05D007920 6.3e-72 274.6 199 70.9
Prupe.2G292400 Prunus persica HOM05D006363 ORTHO05D007920 6.3e-72 274.6 210 69.5
TWI39G0139 Tripterygium wilfordii HOM05D006363 ORTHO05D007920 2.4e-71 272.7 204 69.1
Ca_10782_v3 Cicer arietinum L. HOM05D006363 ORTHO05D007920 4.1e-71 271.9 204 70.6
PGR042G3170 Punica granatum HOM05D006363 ORTHO05D007920 6.9e-71 271.2 205 70.2
Rhsim09G0197500 Rhododendron simsii HOM05D006363 ORTHO05D007920 6.9e-71 271.2 201 70.1
Dinv28459 Davidia involucrata HOM05D006363 ORTHO05D007920 1.2e-70 270.4 212 67.0
Ciclev10007013m.g Citrus clementina HOM05D006363 ORTHO05D007920 2.0e-70 269.6 204 69.1
Medtr1g100753 Medicago truncatula HOM05D006363 ORTHO05D007920 2.6e-70 269.2 212 66.5
vmacro09843 Vaccinium macrocarpon HOM05D006363 ORTHO05D007920 3.4e-70 268.9 201 69.7
LjContig00238g0019616 Lotus japonicus HOM05D006363 ORTHO05D007920 1.0e-69 267.3 200 70.0
QL09p014582 Quercus lobata HOM05D006363 ORTHO05D007920 1.0e-69 267.3 204 69.1
Migut.F01133 Erythranthe guttata HOM05D006363 ORTHO05D007920 1.3e-69 266.9 213 63.8
Glyma.20G157100 Glycine max HOM05D006363 ORTHO05D007920 1.3e-69 266.9 200 70.0
Sabra15G0151200 Salix brachista HOM05D006363 ORTHO05D007920 1.7e-69 266.5 203 66.5
FAN03G1282 Fragaria x ananassa HOM05D006363 ORTHO05D007920 5.0e-69 265.0 212 68.4
Phvul.007G068100 Phaseolus vulgaris HOM05D006363 ORTHO05D007920 5.0e-69 265.0 199 68.8
VMungo0720G1872 Vigna mungo HOM05D006363 ORTHO05D007920 5.0e-69 265.0 200 68.5
Glyma.10G237500 Glycine max HOM05D006363 ORTHO05D007920 6.5e-69 264.6 200 69.0
Potri.015G140600 Populus trichocarpa HOM05D006363 ORTHO05D007920 6.5e-69 264.6 202 65.3
Cpa.g.sc107.33 Carica papaya HOM05D006363 ORTHO05D007920 2.5e-68 262.7 204 69.1
Atru.chr1.482 Acer truncatum HOM05D006363 ORTHO05D007920 4.2e-68 261.9 203 68.0
MELO3C006895.2 Cucumis melo HOM05D006363 ORTHO05D007920 9.4e-68 260.8 203 68.0
BcaB01g04190 Brassica carinata HOM05D006363 ORTHO05D007920 1.2e-67 260.4 206 67.5
Manes.07G111200 Manihot esculenta HOM05D006363 ORTHO05D007920 1.6e-67 260.0 203 66.5
THA.LOC104811988 Tarenaya hassleriana HOM05D006363 ORTHO05D007920 1.6e-67 260.0 199 68.8
MSTRG.8448 Avicennia marina HOM05D006363 ORTHO05D007920 2.7e-67 259.2 207 65.7
Oeu062762.2 Olea europaea HOM05D006363 ORTHO05D007920 2.7e-67 259.2 207 63.8
CANSAT21G2254 Cannabis sativa HOM05D006363 ORTHO05D007920 3.6e-67 258.8 203 66.0
CsaV3_3G016980 Cucumis sativus L. HOM05D006363 ORTHO05D007920 3.6e-67 258.8 203 67.5
BcaC01g06171 Brassica carinata HOM05D006363 ORTHO05D007920 1.4e-66 256.9 202 66.8
BolC3t14244H Brassica oleracea HOM05D006363 ORTHO05D007920 1.4e-66 256.9 202 66.8
CSS0002932 Camellia sinensis var. sinensis HOM05D006363 ORTHO05D007920 1.4e-66 256.9 207 67.1
CSS0028509 Camellia sinensis var. sinensis HOM05D006363 ORTHO05D007920 1.4e-66 256.9 207 67.6
CANSAT21G0627 Cannabis sativa HOM05D006363 ORTHO05D007920 2.3e-66 256.1 203 66.5
BraA03t10870Z Brassica rapa HOM05D006363 ORTHO05D007920 5.1e-66 255.0 202 66.3
C03p18470 Brassica napus HOM05D006363 ORTHO05D007920 8.8e-66 254.2 202 66.3
Thhalv10015742m.g Eutrema salsugineum HOM05D006363 ORTHO05D007920 1.5e-65 253.4 209 64.1
Lj8C25T12 Lonicera japonica HOM05D006363 ORTHO05D007920 2.5e-65 252.7 201 64.2
Peaxi162Scf00915g00018 Petunia axillaris HOM05D006363 ORTHO05D007920 2.5e-65 252.7 210 62.9
Cc03_g13850 Coffea canephora HOM05D006363 ORTHO05D007920 7.4e-65 251.1 203 64.0
Sed0019375 Sechium edule HOM05D006363 ORTHO05D007920 7.4e-65 251.1 202 66.8
Nn6g34197 Nelumbo nucifera HOM05D006363 ORTHO05D007920 6.3e-64 248.1 204 64.7
CARHR265110 Cardamine hirsuta HOM05D006363 ORTHO05D007920 8.2e-64 247.7 215 62.8
GSVIVG01010552001 Vitis vinifera HOM05D006363 ORTHO05D007920 8.2e-64 247.7 210 64.3
AUR62016007 Chenopodium quinoa HOM05D006363 ORTHO05D007920 1.1e-63 247.3 198 63.1
Carub.0008s1228 Capsella rubella HOM05D006363 ORTHO05D007920 1.8e-63 246.5 215 62.8
Nitab4.5_0001508g0030 Nicotiana tabacum HOM05D006363 ORTHO05D007920 1.8e-63 246.5 210 62.4
AUR62021214 Chenopodium quinoa HOM05D006363 ORTHO05D007920 2.4e-63 246.1 202 62.4
PGSC0003DMG400014325 Solanum tuberosum HOM05D006363 ORTHO05D007920 4.1e-63 245.4 210 62.4
Lalb_Chr02g0140961 Lupinus albus HOM05D006363 ORTHO05D007920 5.3e-63 245.0 214 61.7
EL10Ac3g05667 Beta vulgaris HOM05D006363 ORTHO05D007920 9.1e-63 244.2 199 61.3
Aa31LG3G8570 Aethionema arabicum HOM05D006363 ORTHO05D007920 1.2e-62 243.8 202 63.9
Nitab4.5_0000716g0210 Nicotiana tabacum HOM05D006363 ORTHO05D007920 1.2e-62 243.8 210 61.9
Sopen03g004810 Solanum pennellii HOM05D006363 ORTHO05D007920 3.4e-62 242.3 205 63.4
Ah.13g075440 Amaranthus hybridus HOM05D006363 ORTHO05D007920 5.9e-62 241.5 196 63.3
Sp6g14440 Schrenkiella parvula HOM05D006363 ORTHO05D007920 5.9e-62 241.5 202 63.9
Solyc03g025990.1 Solanum lycopersicum HOM05D006363 ORTHO05D007920 5.9e-62 241.5 205 63.4
TAR375G0304 Trochodendron aralioides HOM05D006363 ORTHO05D007920 1.0e-61 240.7 199 63.8
AL8G26570 Arabidopsis lyrata HOM05D006363 ORTHO05D007920 2.9e-61 239.2 204 62.3
HanXRQChr14g0462221 Helianthus annuus HOM05D006363 ORTHO05D007920 5.0e-61 238.4 207 60.9
unitig_60.g25545 Utricularia gibba HOM05D006363 ORTHO05D007920 8.5e-61 237.7 198 64.1
AT5G52190 Arabidopsis thaliana HOM05D006363 ORTHO05D007920 1.4e-60 236.9 204 61.8
ECA238G0548 Erigeron canadensis HOM05D006363 ORTHO05D007920 1.9e-60 236.5 201 63.7
Lsat_1_v5_gn_2_133820 Lactuca sativa HOM05D006363 ORTHO05D007920 5.5e-60 235.0 203 60.6
Zm00001eb428810 Zea mays HOM05D006363 ORTHO05D007920 4.7e-59 231.9 207 66.7
PSO782G5704 Papaver somniferum HOM05D006363 ORTHO05D007920 2.3e-58 229.6 225 56.4
DCAR_018188 Daucus carota HOM05D006363 ORTHO05D007920 6.7e-58 228.0 208 57.2
Aqoxy7G00395 Aquilegia oxysepala HOM05D006363 ORTHO05D007920 4.4e-57 225.3 207 58.0
PSO478G1739 Papaver somniferum HOM05D006363 ORTHO05D007920 5.7e-57 224.9 226 54.4
MBI04_g04731_MAGBIO Magnolia biondii HOM05D006363 ORTHO05D007920 1.3e-56 223.8 206 60.7
CAN.G947.11 Capsicum annuum HOM05D006363 ORTHO05D007920 1.7e-56 223.4 199 63.3
Os04g0568600 Oryza sativa ssp. japonica HOM05D006363 ORTHO05D007920 4.5e-54 215.3 197 62.4
CDE04G1845 Ceratophyllum demersum HOM05D006363 ORTHO05D007920 3.2e-52 209.1 202 56.4
FAN01G1422 Fragaria x ananassa HOM05D006363 ORTHO05D007920 3.6e-51 205.7 142 74.6
ATR0757G111 Amborella trichopoda HOM05D006363 ORTHO05D007920 6.1e-51 204.9 208 56.7
A03p15800 Brassica napus HOM05D006363 ORTHO05D007920 1.2e-46 190.7 148 66.9
HPP92_021110 Vanilla planifolia HOM05D006363 ORTHO05D007920 1.6e-46 190.3 180 58.9
SalBow2G2214 Salvia bowleyana HOM05D006363 ORTHO05D007920 2.7e-46 189.5 139 69.1
Sc25g0000440 Simmondsia chinensis HOM05D006363 ORTHO05D007920 9.4e-44 181.0 139 68.3
SEGI_31787 Sequoiadendron giganteum HOM05D006363 ORTHO05D007920 3.2e-36 156.0 200 47.5
A08p37210 Brassica napus HOM05D006363 ORTHO05D007920 6.8e-34 148.3 129 62.0
Pp3c6_24270 Physcomitrium patens HOM05D006363 ORTHO05D007920 2.0e-33 146.7 210 43.3
SMO367G0077 Selaginella moellendorffii HOM05D006363 ORTHO05D007920 4.4e-33 145.6 175 50.9
BcaC01g06168 Brassica carinata HOM05D006363 ORTHO05D007920 5.7e-25 118.6 92 66.3
BcaC06g36545 Brassica carinata HOM05D006363 ORTHO05D007920 5.9e-22 108.6 86 62.8
Mapoly0047s0087 Marchantia polymorpha HOM05D006363 ORTHO05D007920 1.3e-21 107.5 105 56.2
BolC5t32613H Brassica oleracea HOM05D006363 ORTHO05D007920 1.9e-15 87.0 66 65.2
Actinidia03116 Actinidia chinensis HOM05D006363 ORTHO05D007920 4.1e-15 85.9 106 52.8
C05p38730 Brassica napus HOM05D006363 ORTHO05D007920 7.0e-15 85.1 66 63.6
TAR633G0106 Trochodendron aralioides HOM05D006363 ORTHO05D007920 9.2e-15 84.7 72 59.7
Pp3c17_12800 Physcomitrium patens HOM05D006363 ORTHO05D007920 1.3e-13 80.9 145 40.0
TAR291G0005 Trochodendron aralioides HOM05D006363 ORTHO05D007920 3.0e-13 79.7 71 59.2
TAR375G0495 Trochodendron aralioides HOM05D006363 ORTHO05D007920 3.0e-13 79.7 71 59.2
TAR614G0003 Trochodendron aralioides HOM05D006363 ORTHO05D007920 3.0e-13 79.7 71 60.6
TAR624G1193 Trochodendron aralioides HOM05D006363 ORTHO05D007920 3.0e-13 79.7 71 59.2
TAR633G1276 Trochodendron aralioides HOM05D006363 ORTHO05D007920 6.6e-13 78.6 71 59.2
TAR383G0849 Trochodendron aralioides HOM05D003653 ORTHO05D004249 1.9e-12 77.0 71 57.7
TAR629G0450 Trochodendron aralioides HOM05D006363 ORTHO05D007920 2.5e-12 76.6 71 57.7
TPR.G33086 Trifolium pratense HOM05D006363 ORTHO05D007920 9.5e-12 74.7 65 64.6
BcaC01g06167 Brassica carinata HOM05D006363 ORTHO05D007920 2.8e-11 73.2 45 77.8
BcaC05g27871 Brassica carinata HOM05D006363 ORTHO05D007920 2.1e-06 57.0 108 41.7


User provided reference genes

Program Settings