Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A02765 Eucalyptus grandis HOM05D003626 ORTHO05D004255 2.0e-192 675.6 351 100.0
Eucgr.L00411 Eucalyptus grandis HOM05D003626 ORTHO05D004255 1.7e-114 416.8 228 95.6
PGR042G2663 Punica granatum HOM05D003626 ORTHO05D004255 4.9e-98 362.1 346 59.8
Manes.06G149800 Manihot esculenta HOM05D003626 ORTHO05D004255 1.8e-92 343.6 349 55.3
Eucgr.E00978 Eucalyptus grandis HOM05D003626 ORTHO05D004255 9.9e-91 337.8 228 81.6
Prupe.2G297500 Prunus persica HOM05D003626 ORTHO05D004255 1.9e-89 333.6 356 54.8
Duzib084G0771 Durio zibethinus HOM05D003626 ORTHO05D004255 7.1e-89 331.6 343 54.5
Cpa.g.sc107.76 Carica papaya HOM05D003626 ORTHO05D004255 9.3e-89 331.3 348 53.4
Thecc.03G180000 Theobroma cacao HOM05D003626 ORTHO05D004255 6.7e-87 325.1 325 51.7
Gorai.004G117900 Gossypium raimondii HOM05D003626 ORTHO05D004255 3.7e-85 319.3 351 50.4
TWI39G1025 Tripterygium wilfordii HOM05D003626 ORTHO05D004255 3.7e-85 319.3 329 56.8
Manes.14G024700 Manihot esculenta HOM05D003626 ORTHO05D004255 4.8e-85 318.9 351 54.4
MD07G1273500 Malus domestica HOM05D003626 ORTHO05D004255 6.2e-85 318.5 345 54.8
Duzib068G0520 Durio zibethinus HOM05D003626 ORTHO05D004255 1.4e-84 317.4 343 51.9
TWI23G0117 Tripterygium wilfordii HOM05D003626 ORTHO05D004255 1.8e-84 317.0 341 55.1
RcHm_v2.0_Chr1g0377821 Rosa chinensis HOM05D003626 ORTHO05D004255 9.0e-84 314.7 352 53.4
Potri.015G146300 Populus trichocarpa HOM05D003626 ORTHO05D004255 1.5e-83 313.9 336 53.3
PGR142G2556 Punica granatum HOM05D003626 ORTHO05D004255 1.5e-83 313.9 342 52.6
Dinv28414 Davidia involucrata HOM05D003626 ORTHO05D004255 2.0e-83 313.5 345 52.8
Potri.012G143200 Populus trichocarpa HOM05D003626 ORTHO05D004255 4.5e-83 312.4 348 52.3
Duzib205G1576 Durio zibethinus HOM05D003626 ORTHO05D004255 2.2e-82 310.1 334 53.9
Rhsim03G0188200 Rhododendron simsii HOM05D003626 ORTHO05D004255 2.2e-82 310.1 342 50.9
TWI14G0197 Tripterygium wilfordii HOM05D003626 ORTHO05D004255 2.2e-82 310.1 330 56.4
Gohir.D08G110300 Gossypium hirsutum HOM05D003626 ORTHO05D004255 4.9e-82 308.9 349 49.6
Gohir.A08G098700 Gossypium hirsutum HOM05D003626 ORTHO05D004255 1.9e-81 307.0 349 50.4
GSVIVG01028908001 Vitis vinifera HOM05D003626 ORTHO05D004255 2.7e-80 303.1 352 50.0
Gohir.A12G256000 Gossypium hirsutum HOM05D003626 ORTHO05D004255 4.6e-80 302.4 356 50.6
Dinv35227 Davidia involucrata HOM05D003626 ORTHO05D004255 6.0e-80 302.0 351 51.6
Gorai.008G275600 Gossypium raimondii HOM05D003626 ORTHO05D004255 6.0e-80 302.0 351 51.3
arahy.Tifrunner.gnm1.ann1.DJI5YQ Arachis hypogaea HOM05D003626 ORTHO05D004255 2.3e-79 300.1 338 50.6
Sabra15G0155500 Salix brachista HOM05D003626 ORTHO05D004255 5.1e-79 298.9 336 51.2
MD01G1205100 Malus domestica HOM05D003626 ORTHO05D004255 6.7e-79 298.5 358 50.0
Lalb_Chr03g0034731 Lupinus albus HOM05D003626 ORTHO05D004255 8.7e-79 298.1 331 52.9
FAN03G0953 Fragaria x ananassa HOM05D003626 ORTHO05D004255 1.5e-78 297.4 312 58.0
Aqoxy7G00296 Aquilegia oxysepala HOM05D003626 ORTHO05D004255 4.3e-78 295.8 351 51.6
Gohir.D12G257400 Gossypium hirsutum HOM05D003626 ORTHO05D004255 5.7e-78 295.4 343 51.3
Actinidia25889 Actinidia chinensis HOM05D003626 ORTHO05D000962 7.4e-78 295.0 337 51.0
Glyma.10G233400 Glycine max HOM05D003626 ORTHO05D004255 1.3e-77 294.3 323 52.9
vmacro06655 Vaccinium macrocarpon HOM05D003626 ORTHO05D004255 1.6e-77 293.9 342 49.7
Cfa016262 Carpinus fangiana HOM05D003626 ORTHO05D004255 2.8e-77 293.1 343 50.4
TAR629G0048 Trochodendron aralioides HOM05D003626 ORTHO05D004255 3.7e-77 292.7 339 52.8
arahy.Tifrunner.gnm1.ann1.26FV7C Arachis hypogaea HOM05D003626 ORTHO05D004255 6.2e-77 292.0 210 67.6
arahy.Tifrunner.gnm1.ann1.7Y9ZSE Arachis hypogaea HOM05D003626 ORTHO05D004255 6.2e-77 292.0 210 67.6
TAR636G1367 Trochodendron aralioides HOM05D003626 ORTHO05D004255 6.2e-77 292.0 360 48.6
Glyma.20G161000 Glycine max HOM05D003626 ORTHO05D004255 8.2e-77 291.6 345 49.0
arahy.Tifrunner.gnm1.ann1.TX8CZR Arachis hypogaea HOM05D003626 ORTHO05D004255 1.8e-76 290.4 338 49.7
FvH4_7g29860 Fragaria vesca HOM05D003626 ORTHO05D004255 2.4e-76 290.0 324 55.9
TAR375G0013 Trochodendron aralioides HOM05D003626 ORTHO05D004255 2.4e-76 290.0 322 53.4
CsaV3_3G017260 Cucumis sativus L. HOM05D003626 ORTHO05D004255 4.1e-76 289.3 336 53.3
Lj1C1001T6 Lonicera japonica HOM05D003626 ORTHO05D004255 5.3e-76 288.9 356 48.3
Phvul.007G072400 Phaseolus vulgaris HOM05D003626 ORTHO05D004255 5.3e-76 288.9 253 60.9
VMungo0720G1546 Vigna mungo HOM05D003626 ORTHO05D004255 6.9e-76 288.5 253 60.5
Sed0000543 Sechium edule HOM05D003626 ORTHO05D004255 2.0e-75 287.0 334 53.6
DCAR_020260 Daucus carota HOM05D003626 ORTHO05D004255 5.8e-75 285.4 327 50.5
Lalb_Chr02g0141141 Lupinus albus HOM05D003626 ORTHO05D004255 1.0e-74 284.6 334 48.8
MELO3C006924.2 Cucumis melo HOM05D003626 ORTHO05D004255 1.7e-74 283.9 348 50.9
Psat6g197120 Pisum sativum HOM05D003626 ORTHO05D004255 2.9e-74 283.1 290 54.1
Atru.chr1.420 Acer truncatum HOM05D003626 ORTHO05D004255 1.4e-73 280.8 345 48.4
TPR.G26995 Trifolium pratense HOM05D003626 ORTHO05D004255 1.4e-73 280.8 290 54.1
CANSAT21G2257 Cannabis sativa HOM05D003626 ORTHO05D004255 1.9e-73 280.4 204 69.6
Hma1.2p1_0227F.1_g095920 Hydrangea macrophylla HOM05D003626 ORTHO05D004255 7.1e-73 278.5 351 47.3
CiPaw.05G264100 Carya illinoinensis HOM05D003626 ORTHO05D004255 9.3e-73 278.1 323 52.3
Phvul.004G113400 Phaseolus vulgaris HOM05D003626 ORTHO05D004255 1.6e-72 277.3 320 52.8
Medtr1g100810 Medicago truncatula HOM05D003626 ORTHO05D004255 2.7e-72 276.6 290 53.1
ATR0680G428 Amborella trichopoda HOM05D003626 ORTHO05D004255 3.5e-72 276.2 288 54.5
Glyma.16G181700 Glycine max HOM05D003626 ORTHO05D004255 4.6e-72 275.8 207 66.2
HanXRQChr14g0462361 Helianthus annuus HOM05D003626 ORTHO05D004255 5.1e-71 272.3 327 47.7
Lalb_Chr19g0130741 Lupinus albus HOM05D003626 ORTHO05D004255 1.1e-70 271.2 245 58.0
Lj2g0008392 Lotus japonicus HOM05D003626 ORTHO05D004255 1.5e-70 270.8 325 49.2
Nn6g33408 Nelumbo nucifera HOM05D003626 ORTHO05D004255 1.9e-70 270.4 355 47.9
Nn1g01542 Nelumbo nucifera HOM05D003626 ORTHO05D004255 3.3e-70 269.6 225 63.1
Ciclev10006582m.g Citrus clementina HOM05D003626 ORTHO05D004255 1.3e-69 267.7 323 49.2
Lj5g0006318 Lotus japonicus HOM05D003626 ORTHO05D004255 1.6e-69 267.3 334 45.5
Oeu004107.1 Olea europaea HOM05D003626 ORTHO05D004255 1.4e-68 264.2 374 42.8
COL.COLO4_28044 Corchorus olitorius HOM05D003626 ORTHO05D004255 3.1e-68 263.1 311 49.5
FAN10G0313 Fragaria x ananassa HOM05D003626 ORTHO05D004255 6.9e-68 261.9 320 52.5
TPR.G8172 Trifolium pratense HOM05D003626 ORTHO05D004255 9.0e-68 261.5 286 50.7
FAN03G3125 Fragaria x ananassa HOM05D003626 ORTHO05D004255 3.4e-67 259.6 308 53.2
FAN10G2476 Fragaria x ananassa HOM05D003626 ORTHO05D004255 3.4e-67 259.6 304 52.6
CDE06G1616 Ceratophyllum demersum HOM05D003626 ORTHO05D004255 7.7e-67 258.5 272 51.1
DCAR_029574 Daucus carota HOM05D003626 ORTHO05D004255 1.0e-66 258.1 243 57.6
Lsat_1_v5_gn_9_55160 Lactuca sativa HOM05D003626 ORTHO05D004255 2.2e-66 256.9 225 60.4
PSO478G3353 Papaver somniferum HOM05D003626 ORTHO05D004255 2.2e-66 256.9 281 51.2
EL10Ac3g05599 Beta vulgaris HOM05D003626 ORTHO05D004255 2.9e-66 256.5 358 45.0
Cc02_g02700 Coffea canephora HOM05D003626 ORTHO05D004255 2.9e-66 256.5 305 49.5
ECA233G2749 Erigeron canadensis HOM05D003626 ORTHO05D004255 6.5e-66 255.4 338 45.6
Lalb_Chr06g0161221 Lupinus albus HOM05D003626 ORTHO05D004255 1.1e-65 254.6 332 45.2
PSO782G4415 Papaver somniferum HOM05D003626 ORTHO05D004255 2.5e-65 253.4 264 54.9
Psat0s4127g0040 Pisum sativum HOM05D003626 ORTHO05D004255 1.2e-64 251.1 289 48.8
FAN01G0376 Fragaria x ananassa HOM05D003626 ORTHO05D004255 2.1e-64 250.4 333 49.8
Ca_10741_v3 Cicer arietinum L. HOM05D003626 ORTHO05D004255 3.6e-64 249.6 293 48.8
FAN06G2167 Fragaria x ananassa HOM05D003626 ORTHO05D004255 3.6e-64 249.6 293 53.2
Ah.07g206910 Amaranthus hybridus HOM05D003626 ORTHO05D004255 1.0e-63 248.1 339 46.6
Hund04768 Selenicereus undatus HOM05D003626 ORTHO05D004255 1.8e-63 247.3 212 60.8
A03p56130 Brassica napus HOM05D003626 ORTHO05D004255 2.3e-63 246.9 332 47.0
BraA03t14686Z Brassica rapa HOM05D003626 ORTHO05D004255 2.3e-63 246.9 205 62.4
Sabra12G0107600 Salix brachista HOM05D003626 ORTHO05D004255 3.9e-63 246.1 342 45.9
C07p54460 Brassica napus HOM05D003626 ORTHO05D004255 5.1e-63 245.7 205 62.4
VMungo0464G2114 Vigna mungo HOM05D003626 ORTHO05D002946 6.7e-63 245.4 216 59.3
Nitab4.5_0001951g0040 Nicotiana tabacum HOM05D003626 ORTHO05D004255 2.0e-62 243.8 335 42.7
Sc19g0001390 Simmondsia chinensis HOM05D003626 ORTHO05D004255 1.7e-61 240.7 333 45.0
PGSC0003DMG400015791 Solanum tuberosum HOM05D003626 ORTHO05D004255 2.2e-61 240.4 329 45.0
HPP92_001476 Vanilla planifolia HOM05D003626 ORTHO05D004255 2.2e-61 240.4 247 53.4
Nitab4.5_0000080g0130 Nicotiana tabacum HOM05D003626 ORTHO05D004255 2.8e-61 240.0 220 55.0
Solyc03g025440.3 Solanum lycopersicum HOM05D003626 ORTHO05D004255 2.8e-61 240.0 326 45.4
Nitab4.5_0004439g0040 Nicotiana tabacum HOM05D003626 ORTHO05D004255 3.7e-61 239.6 329 42.6
Carub.0007s1537 Capsella rubella HOM05D003626 ORTHO05D004255 1.1e-60 238.0 192 60.4
Sp7g23640 Schrenkiella parvula HOM05D003626 ORTHO05D004255 1.1e-60 238.0 190 61.6
CAN.G1175.16 Capsicum annuum HOM05D003626 ORTHO05D004255 1.4e-60 237.7 339 42.8
THA.LOC104811971 Tarenaya hassleriana HOM05D003626 ORTHO05D004255 1.4e-60 237.7 189 61.4
BcaC06g32796 Brassica carinata HOM05D003626 ORTHO05D004255 1.8e-60 237.3 193 62.2
Sopen03g004280 Solanum pennellii HOM05D003626 ORTHO05D004255 2.4e-60 236.9 326 44.8
SEGI_20458 Sequoiadendron giganteum HOM05D003626 ORTHO05D004255 3.1e-60 236.5 204 59.8
Haze_00014 Corylus avellana HOM05D003626 ORTHO05D004255 4.1e-60 236.1 351 43.6
Medtr6g053660 Medicago truncatula HOM05D003626 ORTHO05D004255 4.1e-60 236.1 200 58.5
AL7G27480 Arabidopsis lyrata HOM05D003626 ORTHO05D004255 5.3e-60 235.7 189 61.4
Thhalv10024755m.g Eutrema salsugineum HOM05D003626 ORTHO05D004255 6.9e-60 235.3 189 60.8
Aa31LG3G8800 Aethionema arabicum HOM05D003626 ORTHO05D004255 9.1e-60 235.0 189 60.3
SalBow4G0890 Salvia bowleyana HOM05D003626 ORTHO05D004255 1.2e-59 234.6 334 41.9
BolC7t45931H Brassica oleracea HOM05D003626 ORTHO05D004255 2.0e-59 233.8 329 45.6
Oeu061653.1 Olea europaea HOM05D003626 ORTHO05D004255 2.6e-59 233.4 353 42.2
THA.LOC104825103 Tarenaya hassleriana HOM05D003626 ORTHO05D004255 3.4e-59 233.0 189 60.8
ClCG05G008170 Citrullus lanatus HOM05D003626 ORTHO05D004255 5.9e-59 232.3 211 58.8
AT4G25610 Arabidopsis thaliana HOM05D003626 ORTHO05D004255 1.7e-58 230.7 189 59.3
MSTRG.27103 Avicennia marina HOM05D003626 ORTHO05D004255 5.0e-58 229.2 328 43.3
Peaxi162Scf00848g00116 Petunia axillaris HOM05D003626 ORTHO05D004255 6.5e-58 228.8 245 51.0
MSTRG.82 Avicennia marina HOM05D003626 ORTHO05D004255 5.5e-57 225.7 324 41.0
C01p21150 Brassica napus HOM05D003626 ORTHO05D004255 5.5e-57 225.7 203 57.6
CARHR233030 Cardamine hirsuta HOM05D003626 ORTHO05D004255 9.4e-57 224.9 189 59.3
AUR62021157 Chenopodium quinoa HOM05D003626 ORTHO05D004255 1.6e-56 224.2 191 58.6
Peaxi162Scf00444g00425 Petunia axillaris HOM05D003626 ORTHO05D004255 2.1e-56 223.8 334 41.6
Os09g0570200 Oryza sativa ssp. japonica HOM05D003626 ORTHO05D004255 7.9e-56 221.9 327 41.6
Migut.F01102 Erythranthe guttata HOM05D003626 ORTHO05D004255 1.8e-55 220.7 338 42.3
Solyc06g036060.4 Solanum lycopersicum HOM05D003626 ORTHO05D004255 3.0e-55 219.9 279 45.9
A01p16870 Brassica napus HOM05D003626 ORTHO05D004255 1.1e-54 218.0 203 56.7
Sopen06g011810 Solanum pennellii HOM05D003626 ORTHO05D004255 7.4e-54 215.3 279 46.2
BcaC09g50754 Brassica carinata HOM05D003626 ORTHO05D004255 3.7e-53 213.0 189 56.6
Mapoly0003s0245 Marchantia polymorpha HOM05D003626 ORTHO05D004255 8.2e-53 211.8 261 47.5
Zm00001eb095880 Zea mays HOM05D003626 ORTHO05D004255 1.4e-52 211.1 286 42.3
AUR62015951 Chenopodium quinoa HOM05D003626 ORTHO05D004255 2.4e-52 210.3 412 36.4
ECA238G3668 Erigeron canadensis HOM05D003626 ORTHO05D004255 5.3e-52 209.1 324 41.7
Nitab4.5_0000084g0130 Nicotiana tabacum HOM05D003626 ORTHO05D004255 7.0e-52 208.8 329 40.7
BcaNung03703 Brassica carinata HOM05D003626 ORTHO05D004255 2.0e-51 207.2 189 54.5
SMO347G0135 Selaginella moellendorffii HOM05D003626 ORTHO05D004255 2.9e-50 203.4 246 44.7
SGA_v2.0_scaffold60G21078 Striga asiatica HOM05D003626 ORTHO05D004255 2.7e-48 196.8 238 48.3
unitig_0.g459 Utricularia gibba HOM05D003626 ORTHO05D004255 1.1e-46 191.4 220 50.5
unitig_22.g5223 Utricularia gibba HOM05D003626 ORTHO05D004255 5.7e-46 189.1 261 42.5
Migut.F00325 Erythranthe guttata HOM05D003626 ORTHO05D004255 3.7e-45 186.4 335 38.5
Sc13g0008850 Simmondsia chinensis HOM05D003626 ORTHO05D004255 1.4e-44 184.5 295 41.0
CDE02G1538 Ceratophyllum demersum HOM05D003626 ORTHO05D004255 9.1e-44 181.8 228 47.4
Sed0014313 Sechium edule HOM05D003626 ORTHO05D004255 1.7e-42 177.6 303 44.2
CSS0037833 Camellia sinensis var. sinensis HOM05D003626 ORTHO05D004255 8.0e-40 168.7 142 63.4
HPP92_011473 Vanilla planifolia HOM05D003626 ORTHO05D004255 3.5e-35 153.3 246 43.5
FAN06G1666 Fragaria x ananassa HOM05D003626 ORTHO05D004255 4.5e-35 152.9 147 57.1
Pp3c10_4090 Physcomitrium patens HOM05D003626 ORTHO05D004255 7.2e-33 145.6 244 38.9
Zm00001eb224460 Zea mays HOM05D003626 ORTHO05D004255 8.3e-29 132.1 205 41.0
SMO356G0700 Selaginella moellendorffii HOM05D003626 ORTHO05D004255 1.4e-28 131.3 200 41.5
AagrBONN_evm.TU.Sc2ySwM_344.1743 Anthoceros agrestis HOM05D003626 ORTHO05D004255 2.5e-25 120.6 331 30.5
SEGI_03018 Sequoiadendron giganteum HOM05D003626 ORTHO05D004255 7.2e-25 119.0 98 64.3
SEGI_33334 Sequoiadendron giganteum HOM05D003626 ORTHO05D004255 3.6e-24 116.7 101 56.4
Glyma.09G136202 Glycine max HOM05D003626 ORTHO05D004255 9.8e-22 108.6 84 69.0
Lalb_Chr21g0305131 Lupinus albus HOM05D003626 ORTHO05D004255 8.9e-15 85.5 83 60.2
CSS0041965 Camellia sinensis var. sinensis HOM05D003626 ORTHO05D004255 2.9e-13 80.5 65 61.5
Pp3c10_4110 Physcomitrium patens HOM05D003626 ORTHO05D004255 5.4e-12 76.3 148 37.8
Ca_13872_v3 Cicer arietinum L. HOM05D003626 ORTHO05D004255 2.1e-08 64.3 167 39.5
HPP92_001477 Vanilla planifolia HOM05D003626 ORTHO05D004255 1.8e-07 61.2 87 41.4
HPP92_001484 Vanilla planifolia HOM05D003626 ORTHO05D004255 7.5e-06 55.8 59 44.1


User provided reference genes

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